pycom11g05900

regulation of auxin polar transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000705
Physical Location & Seq
Reverse (-)
4528665 .. 4528970
306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05900.1

Sequence Viewer

Length: 306 bp
ATGGAGGACAACTTGAAACCCTTTAATGATCACGGTTGTAGGGAAATTTGTAAAGGGTGGGTGTTATTTGAAAATCCACCTCAAGAAAAAGTTGCTCATACGCCGGTGTTTGGAAATGCATCCTCAAATGCAGTTGGGGATGAACATGAATCTCCTACCATTCAAGAAACAAGGGTAGAAAATCCATCTTCAGGTGAAGGTTCCATACCTAAGGTTATGGGACAAAACAAGGCCCGAAGGTTGAAGGAAAAGGGCAAGGCAAATGATGATTACGTTGTTCAACAGGAAGTGCCAACGTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.18

Weight (kDa)

5.32

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 110, 191
AgsI TTSAA 5 cut(s) 16, 71, 164, 244, 281
AoxI GGCC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
BccI CCATC 1 cut(s) 193
BclI TGATCA 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 191
Bse118I RCCGGY 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 119, 145
BseLI CCNNNNNNNGG 2 cut(s) 110, 191
BshFI GGCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 110, 191
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 119, 145
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 210
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 119, 145
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 232
CviAII CATG 1 cut(s) 146
CviJI RGCY 1 cut(s) 233
CviKI_1 RGCY 1 cut(s) 233
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 1 cut(s) 149
FaiI YATR 4 cut(s) 99, 147, 206, 218
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 28
FokI GGATG 2 cut(s) 106, 152
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 149
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 83, 164
HpyAV CCTTC 3 cut(s) 191, 231, 238
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 2 cut(s) 273, 296
HpyCH4V TGCA 2 cut(s) 119, 131
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 2 cut(s) 273, 296
Hsp92II CATG 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 117, 177, 269
LweI GCATC 1 cut(s) 128
MaeII ACGT 2 cut(s) 273, 296
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 180
MluCI AATT 1 cut(s) 45
MnlI CCTC 2 cut(s) 90, 133
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 1 cut(s) 24
MspI CCGG 1 cut(s) 104
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 121
PfeI GAWTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 232
SetI ASST 8 cut(s) 82, 196, 202, 211, 216, 242, 276, 299
SfaNI GCATC 1 cut(s) 128
SgrAI CRCCGGYG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 45
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 2 cut(s) 276, 299
TasI AATT 1 cut(s) 45
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TspDTI ATGAA 2 cut(s) 156, 162
XapI RAATTY 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.