FvH4_3g35672

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000705
Physical Location & Seq
Reverse (-)
30613205 .. 30614321
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35672.t1

Sequence Viewer

Length: 894 bp
ATGTACACTCCTTCTCAAAAAGGTGTGAATTGGACAAGAAAAGAGAATGAAGTTCTTTGTGTTACATATATGAAGGTCTCCGAAAATTGTACGAAGGGTATTAGTCAAAAAAGAGACGGCATTTGGAAACAAGTGGAGCGAAAATATATTGAAGGCTTCAATGGCAATCCACCAAATGCAAGATCGTTTGAAAGTTGTAAGTCTCGATGGCAAAAATTTCTCTTCCCAGACATGAATAAGTGGCATTCATGCATTACACGCGTCGAAAGGAGACTTCATAGTGGAGGGAATCACATAGATGAACAACACTTAGCCAAATATATGTTTAGGGAAGACATGAAAGGAAAATCGTTTGATTTTCATAGTTGTTATGATTTATGCAAAGGTTGGGTGACATTTGACCAACCCCCACAAGAAATTTTTGGTCCACCACCGGTGCAAAGAAACCTCCCGGTGTCCTTGGAAGATGATGATAATATGATTGCTACCGATAACAACTCCACACCAACTTCAAGTAGGGATCCGATTCCTAGGCCGATGGGAAGAAATGCCTCAAAAAAGAAACAAATCAAGGACCAAGAAAAGGATAGGAAAGCCTTTGAAGATAAACTACTAGCTCGCATGGATCGATTGGCGGAAGAAAATGCAAAGGTGGAAGAGACAAAAGCAACAAGAGAGAAGATGAAGGAGGATCGACGAGAGAGAGATAGAGATGAAGCAACTTTAATGTTGCAAACCGTTGATTATTCTCCGGTGAGCAAGGAATATTTTGATGATCGAAAGAGGAAAGCAATTCAAAGGCTTCGGGCACGAGAGTTGTTCCCGAATACTAACACCGACTCAACATCAAATTACTATCGTCCACAAATGCAATCCGATGAAGATGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

298

Amino Acids

35.12

Weight (kDa)

8.73

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 261
AciI CCGC 1 cut(s) 635
AclWI GGATC 4 cut(s) 515, 528, 633, 699
AcsI RAATTY 3 cut(s) 215, 417, 887
AfaI GTAC 2 cut(s) 5, 91
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 259
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 6 cut(s) 152, 160, 191, 513, 602, 797
AluBI AGCT 1 cut(s) 617
AluI AGCT 1 cut(s) 617
Alw26I GTCTC 5 cut(s) 82, 108, 207, 265, 653
AlwI GGATC 4 cut(s) 515, 528, 633, 699
AoxI GGCC 1 cut(s) 533
ApoI RAATTY 3 cut(s) 215, 417, 887
AsiGI ACCGGT 1 cut(s) 433
AspA2I CCTAGG 1 cut(s) 530
AspS9I GGNCC 2 cut(s) 425, 574
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 403, 766
AvaII GGWCC 2 cut(s) 425, 574
AvrII CCTAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 811
BamHI GGATCC 1 cut(s) 520
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 339
BccI CCATC 2 cut(s) 201, 532
BceAI ACGGC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 5 cut(s) 82, 108, 207, 265, 653
BfaI CTAG 2 cut(s) 531, 614
BlnI CCTAGG 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 2 cut(s) 425, 574
BmgT120I GGNCC 2 cut(s) 425, 574
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 452
Bsa29I ATCGAT 1 cut(s) 628
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 459, 530
BsaWI WCCGGW 2 cut(s) 433, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse118I RCCGGY 1 cut(s) 433
BseCI ATCGAT 1 cut(s) 628
BseDI CCNNGG 2 cut(s) 459, 530
BseLI CCNNNNNNNGG 1 cut(s) 583
BseSI GKGCMC 1 cut(s) 811
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 535
BshTI ACCGGT 1 cut(s) 433
BshVI ATCGAT 1 cut(s) 628
BsiSI CCGG 3 cut(s) 434, 452, 752
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 5 cut(s) 82, 108, 207, 265, 653
BsmBI CGTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 535
Bso31I GGTCTC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 811
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 182, 520, 625, 691, 775
BspACI CCGC 1 cut(s) 635
BspANI GGCC 1 cut(s) 535
BspDI ATCGAT 1 cut(s) 628
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 4 cut(s) 515, 528, 633, 699
BspTNI GGTCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 459, 530
BssMI GATC 5 cut(s) 182, 520, 625, 691, 775
BssSI CACGAG 1 cut(s) 810
BssT1I CCWWGG 2 cut(s) 459, 530
Bst2BI CACGAG 1 cut(s) 810
Bst4CI ACNGT 1 cut(s) 739
Bst6I CTCTTC 2 cut(s) 227, 651
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 5 cut(s) 185, 523, 628, 694, 778
BstMAI GTCTC 5 cut(s) 82, 108, 207, 265, 653
BstMBI GATC 5 cut(s) 182, 520, 625, 691, 775
BstMWI GCNNNNNNNGC 2 cut(s) 162, 258
BstSCI CCNGG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 811
BstUI CGCG 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 1 cut(s) 628
BsuRI GGCC 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 628
Cac8I GCNNGC 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 425, 574
ClaI ATCGAT 1 cut(s) 628
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 4, 90
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 4 cut(s) 232, 249, 337, 622
CviJI RGCY 6 cut(s) 156, 314, 535, 596, 617, 802
CviKI_1 RGCY 6 cut(s) 156, 314, 535, 596, 617, 802
CviQI GTAC 2 cut(s) 4, 90
DdeI CTNAG 1 cut(s) 310
DpnI GATC 5 cut(s) 184, 522, 627, 693, 777
DpnII GATC 5 cut(s) 182, 520, 625, 691, 775
Eam1104I CTCTTC 2 cut(s) 227, 651
EarI CTCTTC 2 cut(s) 227, 651
EciI GGCGGA 1 cut(s) 650
Eco130I CCWWGG 2 cut(s) 459, 530
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 425, 574
EcoT14I CCWWGG 2 cut(s) 459, 530
EcoT22I ATGCAT 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 459, 530
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 4 cut(s) 235, 252, 340, 625
FatI CATG 4 cut(s) 231, 248, 336, 621
FspBI CTAG 2 cut(s) 531, 614
HaeIII GGCC 1 cut(s) 535
HapII CCGG 3 cut(s) 434, 452, 752
HgaI GACGC 1 cut(s) 250
Hin1II CATG 4 cut(s) 235, 252, 340, 625
HinfI GANTC 3 cut(s) 289, 526, 839
HpaII CCGG 3 cut(s) 434, 452, 752
HphI GGTGA 2 cut(s) 403, 766
Hpy166II GTNNAC 3 cut(s) 6, 428, 863
Hpy188I TCNGA 3 cut(s) 82, 525, 877
Hpy188III TCNNGA 2 cut(s) 204, 823
Hpy8I GTNNAC 3 cut(s) 6, 428, 863
Hpy99I CGWCG 2 cut(s) 266, 699
HpyAV CCTTC 5 cut(s) 21, 67, 88, 146, 679
HpyCH4III ACNGT 1 cut(s) 739
HpyCH4V TGCA 7 cut(s) 179, 252, 381, 439, 647, 733, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 258
HpyF3I CTNAG 1 cut(s) 310
Hsp92II CATG 4 cut(s) 235, 252, 340, 625
Kzo9I GATC 5 cut(s) 182, 520, 625, 691, 775
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 240, 447, 465, 765
MaeI CTAG 2 cut(s) 531, 614
MaeIII GTNAC 2 cut(s) 61, 391
MalI GATC 5 cut(s) 184, 522, 627, 693, 777
MboI GATC 5 cut(s) 182, 520, 625, 691, 775
MboII GAAGA 9 cut(s) 214, 344, 476, 555, 614, 650, 668, 691, 893
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 811
MluCI AATT 7 cut(s) 28, 85, 215, 417, 792, 850, 887
MluI ACGCGT 1 cut(s) 259
MlyI GAGTC 1 cut(s) 833
MnlI CCTC 5 cut(s) 278, 458, 562, 682, 777
Mph1103I ATGCAT 1 cut(s) 254
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 3 cut(s) 434, 452, 752
MspR9I CCNGG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 244
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 162, 258
NciI CCSGG 1 cut(s) 452
NdeII GATC 5 cut(s) 182, 520, 625, 691, 775
NlaIII CATG 4 cut(s) 235, 252, 340, 625
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 625
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 289, 526
PinAI ACCGGT 1 cut(s) 433
PleI GAGTC 1 cut(s) 833
PpsI GAGTC 1 cut(s) 833
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 425, 574
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 2 cut(s) 5, 91
RsaNI GTAC 2 cut(s) 4, 90
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 725
Sau3AI GATC 5 cut(s) 182, 520, 625, 691, 775
Sau96I GGNCC 2 cut(s) 425, 574
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 811
SetI ASST 6 cut(s) 25, 78, 388, 450, 619, 654
SgrAI CRCCGGYG 1 cut(s) 433
SinI GGWCC 2 cut(s) 425, 574
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 7 cut(s) 28, 85, 215, 417, 792, 850, 887
SsiI CCGC 1 cut(s) 635
SspI AATATT 1 cut(s) 767
SspMI CTAG 2 cut(s) 531, 614
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 2 cut(s) 459, 530
TaaI ACNGT 1 cut(s) 739
TaqI TCGA 5 cut(s) 205, 264, 628, 694, 778
TasI AATT 7 cut(s) 28, 85, 215, 417, 792, 850, 887
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 289, 526
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TseFI GTSAC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 425, 574
XapI RAATTY 3 cut(s) 215, 417, 887
XmaJI CCTAGG 1 cut(s) 530
XspI CTAG 2 cut(s) 531, 614
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.