pycom09g12380

regulation of auxin polar transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000705
Physical Location & Seq
Forward (+)
10915120 .. 10915566
447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12380.1

Sequence Viewer

Length: 447 bp
ATGTTCAGAACTCAATCCTCAGTTGTAGGTGGGGATGAAGATGGATCTCCTACCATTCAAGAAACAAGGGTAGAAAATGCGTCTTCGGGTGGAGGTTCCATACCTAAGGCTATGGGACGAAACAAGGCCCGAATGTTGAAGGAAAAGGGCAAGGCAAAGGATGATTACGCCGCTCAACAGGATGTGGCGGCCTCATTGCAATTAATGGCTGAGCAAAATGCCTTTGTCGTGGAAGAAAGGAACCGTAGGCATGAAAAACGGGCCAAACAAATACAAAAAGAGATGGATGATAGGAGTATGCAAATGAACACTTCGGATTACACATCAATGAGTAAGGCCTATTTTGATAGGAAAAAGAAGGAAATTATGACCCGGCGACAGTTGTTTACCTCCGACTATACTCCTACAATGGCGGATGATGAAGATCATGTTGATTATGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.81

Weight (kDa)

6.75

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 18 - 122 3.3e-06 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 173
AciI CCGC 3 cut(s) 171, 188, 413
AclWI GGATC 1 cut(s) 52
AgsI TTSAA 2 cut(s) 59, 139
AlwI GGATC 1 cut(s) 52
AoxI GGCC 4 cut(s) 126, 189, 261, 336
AseI ATTAAT 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 127, 261
AsuC2I CCSGG 1 cut(s) 373
AxyI CCTNAGG 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 75
BccI CCATC 2 cut(s) 35, 277
BcnI CCSGG 1 cut(s) 373
BisI GCNGC 2 cut(s) 171, 189
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 2 cut(s) 172, 190
Bme1390I CCNGG 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 127, 261
BmiI GGNNCC 2 cut(s) 97, 242
BmrFI CCNGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 373
BsaBI GATNNNNATC 1 cut(s) 423
Bse21I CCTNAGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 423
BseGI GGATG 5 cut(s) 40, 166, 187, 292, 421
BseJI GATNNNNATC 1 cut(s) 423
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 33, 201
BshFI GGCC 4 cut(s) 128, 191, 263, 338
BsiSI CCGG 1 cut(s) 373
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 4 cut(s) 128, 191, 263, 338
Bsp143I GATC 2 cut(s) 44, 424
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 3 cut(s) 171, 188, 413
BspANI GGCC 4 cut(s) 128, 191, 263, 338
BspCNI CTCAG 2 cut(s) 32, 202
BspLI GGNNCC 2 cut(s) 97, 242
BspPI GGATC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 194
BssMI GATC 2 cut(s) 44, 424
Bst4CI ACNGT 2 cut(s) 245, 381
BstDEI CTNAG 3 cut(s) 19, 105, 210
BstF5I GGATG 5 cut(s) 40, 166, 187, 292, 421
BstKTI GATC 2 cut(s) 47, 427
BstMBI GATC 2 cut(s) 44, 424
BstSCI CCNGG 1 cut(s) 371
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu36I CCTNAGG 1 cut(s) 105
BsuRI GGCC 4 cut(s) 128, 191, 263, 338
BtsCI GGATG 5 cut(s) 40, 166, 187, 292, 421
Cfr13I GGNCC 2 cut(s) 127, 261
CseI GACGC 1 cut(s) 69
CviAII CATG 2 cut(s) 251, 428
CviJI RGCY 6 cut(s) 110, 128, 191, 209, 263, 338
CviKI_1 RGCY 6 cut(s) 110, 128, 191, 209, 263, 338
DdeI CTNAG 3 cut(s) 19, 105, 210
DpnI GATC 2 cut(s) 46, 426
DpnII GATC 2 cut(s) 44, 424
EciI GGCGGA 1 cut(s) 428
Eco147I AGGCCT 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 105
FaeI CATG 2 cut(s) 254, 431
FaiI YATR 8 cut(s) 101, 113, 252, 299, 368, 399, 429, 438
FaqI GGGAC 1 cut(s) 129
FatI CATG 2 cut(s) 250, 427
Fnu4HI GCNGC 2 cut(s) 171, 189
FokI GGATG 5 cut(s) 47, 173, 194, 299, 428
Fsp4HI GCNGC 2 cut(s) 171, 189
GluI GCNGC 2 cut(s) 171, 189
HaeIII GGCC 4 cut(s) 128, 191, 263, 338
HapII CCGG 1 cut(s) 373
HgaI GACGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 254, 431
HpaII CCGG 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 3 cut(s) 8, 316, 394
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 133, 352
HpyCH4III ACNGT 2 cut(s) 245, 381
HpyCH4V TGCA 2 cut(s) 199, 301
HpyF3I CTNAG 3 cut(s) 19, 105, 210
Hsp92II CATG 2 cut(s) 254, 431
Kzo9I GATC 2 cut(s) 44, 424
LpnPI CCDG 2 cut(s) 164, 386
MalI GATC 2 cut(s) 46, 426
MbiI CCGCTC 1 cut(s) 173
MboI GATC 2 cut(s) 44, 424
MboII GAAGA 4 cut(s) 50, 75, 245, 434
MflI RGATCY 1 cut(s) 44
MluCI AATT 2 cut(s) 200, 363
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 4 cut(s) 28, 86, 202, 400
MseI TTAA 2 cut(s) 203, 445
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 373
NciI CCSGG 1 cut(s) 373
NdeII GATC 2 cut(s) 44, 424
NlaIII CATG 2 cut(s) 254, 431
NlaIV GGNNCC 2 cut(s) 97, 242
PceI AGGCCT 1 cut(s) 338
PkrI GCNGC 2 cut(s) 172, 190
PshBI ATTAAT 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 97, 242
PspPI GGNCC 2 cut(s) 127, 261
PsuI RGATCY 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 2 cut(s) 203, 445
SatI GCNGC 2 cut(s) 171, 189
Sau3AI GATC 2 cut(s) 44, 424
Sau96I GGNCC 2 cut(s) 127, 261
ScrFI CCNGG 1 cut(s) 373
SetI ASST 4 cut(s) 31, 97, 106, 392
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 2 cut(s) 200, 363
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 3 cut(s) 171, 188, 413
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 2 cut(s) 245, 381
TasI AATT 2 cut(s) 200, 363
TauI GCSGC 2 cut(s) 173, 191
Tru1I TTAA 2 cut(s) 203, 445
Tru9I TTAA 2 cut(s) 203, 445
TspDTI ATGAA 4 cut(s) 51, 267, 320, 435
VspI ATTAAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.