Rmu_sc0006616.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006616.1
OG0000705
Physical Location & Seq
Reverse (-)
17103 .. 18788
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006616.1_g000006.1.cds

Sequence Viewer

Length: 696 bp
atggatgccatagggaacacacgagaaaaacattcgtgtgatgtctatagaaccataggttctaagactactcagtcagaggactcgacaacacttagccgaagatttctacaaggacgatatgaatggaaaaaattatcgccatcaaagttgttacaatttgttagcgatagttgggtgacgtttgatgatccaccactagaaaactttggtccatcaccggtgcaaagaaacctccctatttccttggaggatgatgaagagccaaacagatctacttcgacaccaacttcaactccggattcccttcctagaccattgggacaaaatatggcaagaaaacataaattgaaggccaaagaaaaggaggagaaagcctttcaagaaaaattattggctaacatagaccaaattagggaagaaaacatcaaagcagaagaggcaaaagccataagagagaaaatgaaggaggatcgacgagagagggagagggaagaagtcattgtaatgatgcaaaccgttgattttactccaaggagcaagacatattttgatgggaagaagatggaagctcttgaaaggctaagggcacgtgagttgtttcctaattccgccacaacatccaatgactaccatccatgtatggcaactgaatacgactatcatccacgtatggcatccgaagatgacgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.91

Weight (kDa)

5.62

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 612
AclWI GGATC 2 cut(s) 185, 480
AcvI CACGTG 1 cut(s) 593
AfiI CCNNNNNNNGG 1 cut(s) 415
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 4 cut(s) 294, 352, 383, 578
AluBI AGCT 1 cut(s) 572
AluI AGCT 1 cut(s) 572
AlwI GGATC 2 cut(s) 185, 480
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 1 cut(s) 354
AsiGI ACCGGT 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 190, 210
AvaII GGWCC 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 592
BauI CACGAG 1 cut(s) 21
BbrPI CACGTG 1 cut(s) 593
BccI CCATC 5 cut(s) 151, 223, 548, 559, 642
BfaI CTAG 2 cut(s) 200, 312
BfmI CTRYAG 1 cut(s) 46
BglII AGATCT 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmsI GCATC 2 cut(s) 501, 686
Bpu10I CCTNAGC 1 cut(s) 584
BsaAI YACGTR 2 cut(s) 593, 671
BsaJI CCNNGG 2 cut(s) 246, 533
BsaWI WCCGGW 2 cut(s) 220, 298
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse118I RCCGGY 1 cut(s) 220
BseAI TCCGGA 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 246, 533
BseGI GGATG 6 cut(s) 10, 259, 620, 634, 664, 677
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 592
BshFI GGCC 1 cut(s) 356
BshTI ACCGGT 1 cut(s) 220
BsiSI CCGG 2 cut(s) 221, 299
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 592
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 3 cut(s) 190, 272, 472
BspACI CCGC 1 cut(s) 612
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 298
BspPI GGATC 2 cut(s) 185, 480
BspQI GCTCTTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 246, 533
BssMI GATC 3 cut(s) 190, 272, 472
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 246, 533
Bst2BI CACGAG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 2 cut(s) 255, 432
BstBAI YACGTR 2 cut(s) 593, 671
BstDEI CTNAG 4 cut(s) 63, 72, 95, 584
BstF5I GGATG 6 cut(s) 10, 259, 620, 634, 664, 677
BstKTI GATC 3 cut(s) 193, 275, 475
BstMBI GATC 3 cut(s) 190, 272, 472
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 1 cut(s) 356
BtsCI GGATG 6 cut(s) 10, 259, 620, 634, 664, 677
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 212
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 1 cut(s) 639
CviJI RGCY 8 cut(s) 99, 265, 356, 377, 398, 449, 572, 583
CviKI_1 RGCY 8 cut(s) 99, 265, 356, 377, 398, 449, 572, 583
DdeI CTNAG 4 cut(s) 63, 72, 95, 584
DpnI GATC 3 cut(s) 192, 274, 474
DpnII GATC 3 cut(s) 190, 272, 472
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 255, 432
EarI CTCTTC 2 cut(s) 255, 432
EciI GGCGGA 1 cut(s) 601
Eco130I CCWWGG 2 cut(s) 246, 533
Eco47I GGWCC 1 cut(s) 212
Eco72I CACGTG 1 cut(s) 593
EcoT14I CCWWGG 2 cut(s) 246, 533
ErhI CCWWGG 2 cut(s) 246, 533
FaeI CATG 1 cut(s) 642
FaqI GGGAC 1 cut(s) 336
FatI CATG 1 cut(s) 638
FokI GGATG 6 cut(s) 17, 266, 607, 621, 651, 664
FspBI CTAG 2 cut(s) 200, 312
HaeIII GGCC 1 cut(s) 356
HapII CCGG 2 cut(s) 221, 299
Hin1II CATG 1 cut(s) 642
HinfI GANTC 2 cut(s) 83, 302
HpaII CCGG 2 cut(s) 221, 299
HphI GGTGA 2 cut(s) 190, 210
Hpy188I TCNGA 2 cut(s) 79, 682
Hpy188III TCNNGA 3 cut(s) 299, 383, 575
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 3 cut(s) 317, 346, 460
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 3 cut(s) 182, 592, 670
HpyCH4V TGCA 2 cut(s) 226, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 4 cut(s) 63, 72, 95, 584
HpySE526I ACGT 3 cut(s) 182, 592, 670
Hsp92II CATG 1 cut(s) 642
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 190, 272, 472
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 537
LpnPI CCDG 2 cut(s) 234, 312
LweI GCATC 2 cut(s) 501, 686
MaeI CTAG 2 cut(s) 200, 312
MaeII ACGT 3 cut(s) 182, 592, 670
MaeIII GTNAC 2 cut(s) 153, 178
MalI GATC 3 cut(s) 192, 274, 474
MboI GATC 3 cut(s) 190, 272, 472
MboII GAAGA 8 cut(s) 114, 272, 431, 449, 506, 571, 574, 695
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 592
MluCI AATT 6 cut(s) 134, 158, 347, 389, 411, 607
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 8 cut(s) 73, 244, 245, 361, 433, 463, 477, 483
MroI TCCGGA 1 cut(s) 298
MslI CAYNNNNRTG 2 cut(s) 36, 506
MspI CCGG 2 cut(s) 221, 299
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeII GATC 3 cut(s) 190, 272, 472
NlaIII CATG 1 cut(s) 642
NmuCI GTSAC 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 220
PleI GAGTC 1 cut(s) 77
PmaCI CACGTG 1 cut(s) 593
PmlI CACGTG 1 cut(s) 593
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 2 cut(s) 593, 671
PspCI CACGTG 1 cut(s) 593
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 272
RseI CAYNNNNRTG 2 cut(s) 36, 506
SapI GCTCTTC 1 cut(s) 255
Sau3AI GATC 3 cut(s) 190, 272, 472
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 592
SetI ASST 6 cut(s) 61, 185, 237, 574, 595, 673
SfaNI GCATC 2 cut(s) 501, 686
SfcI CTRYAG 1 cut(s) 46
SgrAI CRCCGGYG 1 cut(s) 220
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 36, 506
Sse9I AATT 6 cut(s) 134, 158, 347, 389, 411, 607
SsiI CCGC 1 cut(s) 612
SspMI CTAG 2 cut(s) 200, 312
StyI CCWWGG 2 cut(s) 246, 533
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 3 cut(s) 185, 595, 673
TaqI TCGA 3 cut(s) 86, 281, 475
TasI AATT 6 cut(s) 134, 158, 347, 389, 411, 607
TfiI GAWTC 1 cut(s) 302
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 138, 273, 479
VpaK11BI GGWCC 1 cut(s) 212
XspI CTAG 2 cut(s) 200, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.