Rh1CG207600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000705
Physical Location & Seq
Reverse (-)
44968590 .. 44969279
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG207600.1

Sequence Viewer

Length: 288 bp
ATGGAAGCTGAAGCTATTAGGAAGAAAGAGAAGGACAAACATATGCTACCAGTATTTCAAGAGTCCGCAAGACGGGAAGAAGAAAAGTTAGATTTGGAGTATTTGAAAATAGATACCACCTATATGCCTCCGGAGCAGAGAGAATTCTTCGAGCATAAGAAAACTGAGATTTATAATAAAATGAGATTCCGTGGCTCCGATTCCTCAATCTCCGGCAACTCATCGGTAACCTCAGACTTCGATACGTCATCGGACTATCATGTTGATCCGAATCCTGGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.21

Weight (kDa)

5.19

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 72, 275
AgsI TTSAA 2 cut(s) 59, 106
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 8, 14
AluI AGCT 2 cut(s) 8, 14
AlwI GGATC 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 130
ApoI RAATTY 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 278
AvaII GGWCC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 275
Bse1I ACTGG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 72, 275
BseMII CTCAG 2 cut(s) 156, 246
BseNI ACTGG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 131, 213
BslI CCNNNNNNNGG 2 cut(s) 72, 275
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 157, 245
BspEI TCCGGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 165, 232
BstDSI CCRYGG 1 cut(s) 190
BstEII GGTNACC 1 cut(s) 226
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 276
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 278
CviAII CATG 1 cut(s) 260
CviJI RGCY 3 cut(s) 8, 14, 195
CviKI_1 RGCY 3 cut(s) 8, 14, 195
DdeI CTNAG 2 cut(s) 165, 232
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 1 cut(s) 263
FaiI YATR 8 cut(s) 42, 44, 123, 125, 156, 174, 261, 283
FatI CATG 1 cut(s) 259
FauNDI CATATG 1 cut(s) 42
HapII CCGG 2 cut(s) 131, 213
Hin1II CATG 1 cut(s) 263
HinfI GANTC 4 cut(s) 62, 186, 200, 271
HpaII CCGG 2 cut(s) 131, 213
Hpy188I TCNGA 4 cut(s) 199, 235, 253, 270
Hpy188III TCNNGA 2 cut(s) 59, 131
HpyAV CCTTC 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 165, 232
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 133, 200
LpnPI CCDG 4 cut(s) 63, 144, 226, 261
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 4 cut(s) 34, 89, 92, 139
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 3 cut(s) 138, 214, 241
MroI TCCGGA 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 2 cut(s) 131, 213
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeI CATATG 1 cut(s) 42
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 196
PfeI GAWTC 3 cut(s) 186, 200, 271
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 274
PspEI GGTNACC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 122
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 276
SetI ASST 5 cut(s) 10, 16, 122, 233, 248
SgeI CNNG 9 cut(s) 62, 71, 81, 86, 143, 163, 203, 225, 272
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 274
TaiI ACGT 1 cut(s) 248
TaqI TCGA 2 cut(s) 150, 240
TasI AATT 1 cut(s) 143
TfiI GAWTC 3 cut(s) 186, 200, 271
TspGWI ACGGA 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.