Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000705

Physical Location & Seq

Genomic Coordinates Forward (+)

60207236 .. 60208027

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG418600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGATTGGTTCGAGATGGAATTCCCCAAGGCTGAAGTGCTTATCTTGAATTTCGCCTCCAACGAGTACTTGTTACCTCCTTTTATTCGTAACATGCCAAAGTTGAAGGCATTGATCTTGATAAATTACGGTGCATCCAATGCAATTCTCCATGGTTTTTCTGTCTTGTCAAATTTGGGCAACTTGAGAAGCCTATGGCTTGAAAAAGTCTCAGTCCCTCCCTTATCCCCTGCTACCTTCCCTTCCAAAAAATTACGCAAGATTTCGTTAATCTTGTGTAAGATTAATAACAGCCTCGATCAATCAGTATTTCCTCGGCTCTTAGAACTCACAATTGATCATTGTGATGATTTGTTCGAGCTACCTTCAAGCATTTGTTGGATGCATATGCTTAACAATCTAAGCATAACCAACTGTCACCATCTATGGCATCTGCCAGCGGATTTAAGTAAGCTGAAATCTCTACAAATCCTAAGGCTATATGCGTGCCCATATCTGCAAAAACTTCCTCCTGACATTTGTGAGCTCTGTTGCTTGAAGTATCTAAACATTTCCCAATGCTGTAGTTTGAGGGGCCTTCCCTTAGACATTGGTAAGTTGGCAAGTTTGGAAAAGATTGACATGAGGGAATGCTCGCAAATCAGGAGCATTCCAAATTCTACAGCAGCTTTACCATCTCTTGGTCGTGTAGTATGTGATGAAGAGATTTCTTGGTTCTGGAAGAAGGCATTGCCAGACCTTCATGTTCAGGTTGCAGAGAAACGTTTCGATCTTGACTGGCTTGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009987 GO:0010035 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0023052 GO:0042221 GO:0042742 GO:0043207 GO:0044237 GO:0044464 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0080167 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

263

Amino Acids

30.1

Weight (kDa)

6.65

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	84 - 211	3.8e-11	Leucine-rich repeat region
LRR_14	PF23598	172 - 236	6.1e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica	MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica	Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis	pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis	RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata	RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora	Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii	Rroxscaffold_1G00024040
rosa_samantha	Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana	Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	680
AciI	CCGC	1 cut(s)	440
AclI	AACGTT	1 cut(s)	763
AcsI	RAATTY	4 cut(s)	20, 49, 172, 655
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	5 cut(s)	49, 106, 203, 369, 538
AluBI	AGCT	4 cut(s)	361, 454, 526, 668
AluI	AGCT	4 cut(s)	361, 454, 526, 668
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	4 cut(s)	20, 49, 172, 655
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	764
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	677
BccI	CCATC	3 cut(s)	10, 429, 682
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	2 cut(s)	562, 660
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
BmcAI	AGTACT	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	1 cut(s)	575
BmsI	GCATC	3 cut(s)	143, 372, 439
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	27, 151, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	782
Bse21I	CCTNAGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	728
BseDI	CCNNGG	3 cut(s)	27, 151, 314
BseGI	GGATG	2 cut(s)	134, 387
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	782
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	677
BshFI	GGCC	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	2 cut(s)	635, 648
BsnI	GGCC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	491, 528
Bsp143I	GATC	4 cut(s)	114, 298, 337, 769
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	782
BssECI	CCNNGG	3 cut(s)	27, 151, 314
BssMI	GATC	4 cut(s)	114, 298, 337, 769
BssT1I	CCWWGG	2 cut(s)	27, 151
Bst4CI	ACNGT	2 cut(s)	131, 416
Bst6I	CTCTTC	1 cut(s)	696
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	438, 487, 635
BstDEI	CTNAG	5 cut(s)	211, 322, 401, 473, 583
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	134, 387
BstKTI	GATC	4 cut(s)	117, 301, 340, 772
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	114, 298, 337, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	562, 660
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	677
Bsu36I	CCTNAGG	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	134, 387
Cac8I	GCNNGC	3 cut(s)	438, 487, 635
Cfr13I	GGNCC	1 cut(s)	574
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	4 cut(s)	94, 152, 622, 743
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	5 cut(s)	211, 322, 401, 473, 583
DpnI	GATC	4 cut(s)	116, 300, 339, 771
DpnII	GATC	4 cut(s)	114, 298, 337, 769
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	27, 151
Eco24I	GRGCYC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	27, 151
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	528
ErhI	CCWWGG	2 cut(s)	27, 151
FaeI	CATG	4 cut(s)	97, 155, 625, 746
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	4 cut(s)	93, 151, 621, 742
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	2 cut(s)	121, 394
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	666
GluI	GCNGC	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	576
Hin1II	CATG	4 cut(s)	97, 155, 625, 746
HphI	GGTGA	1 cut(s)	410
Hpy188III	TCNNGA	7 cut(s)	13, 46, 118, 512, 643, 718, 773
HpyAV	CCTTC	7 cut(s)	100, 247, 252, 375, 587, 718, 749
HpyCH4III	ACNGT	2 cut(s)	131, 416
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	5 cut(s)	134, 143, 385, 499, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	5 cut(s)	211, 322, 401, 473, 583
HpySE526I	ACGT	1 cut(s)	763
Hsp92II	CATG	4 cut(s)	97, 155, 625, 746
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	114, 298, 337, 769
LmnI	GCTCC	1 cut(s)	645
LpnPI	CCDG	8 cut(s)	243, 450, 525, 628, 703, 734, 747, 763
Lsp1109I	GCAGC	1 cut(s)	677
LweI	GCATC	3 cut(s)	143, 372, 439
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	3 cut(s)	72, 89, 416
MalI	GATC	4 cut(s)	116, 300, 339, 771
MboI	GATC	4 cut(s)	114, 298, 337, 769
MboII	GAAGA	2 cut(s)	713, 733
MfeI	CAATTG	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	491, 528
MluCI	AATT	8 cut(s)	20, 49, 124, 144, 172, 251, 333, 655
MmeI	TCCRAC	2 cut(s)	84, 359
MnlI	CCTC	8 cut(s)	67, 87, 228, 305, 324, 519, 564, 618
Mph1103I	ATGCAT	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	4 cut(s)	269, 285, 393, 446
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	2 cut(s)	635, 648
MwoI	GCNNNNNNNGC	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	4 cut(s)	114, 298, 337, 769
NlaIII	CATG	4 cut(s)	97, 155, 625, 746
NlaIV	GGNNCC	1 cut(s)	575
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	2 cut(s)	635, 648
PdmI	GAANNNNTTC	1 cut(s)	764
PflMI	CCANNNNNTGG	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	667
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	763
PspN4I	GGNNCC	1 cut(s)	575
PspPI	GGNCC	1 cut(s)	574
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	269, 285, 393, 446
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	4 cut(s)	114, 298, 337, 769
Sau96I	GGNCC	1 cut(s)	574
ScaI	AGTACT	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	491, 528
SfaNI	GCATC	3 cut(s)	143, 372, 439
SfcI	CTRYAG	2 cut(s)	562, 660
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	8 cut(s)	20, 49, 124, 144, 172, 251, 333, 655
SsiI	CCGC	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	528
StyI	CCWWGG	2 cut(s)	27, 151
TaaI	ACNGT	2 cut(s)	131, 416
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	4 cut(s)	12, 297, 357, 768
TasI	AATT	8 cut(s)	20, 49, 124, 144, 172, 251, 333, 655
TatI	WGTACW	1 cut(s)	66
Tru1I	TTAA	4 cut(s)	269, 285, 393, 446
Tru9I	TTAA	4 cut(s)	269, 285, 393, 446
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	714, 731
Van91I	CCANNNNNTGG	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	4 cut(s)	20, 49, 172, 655
XceI	RCATGY	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	764
ZrmI	AGTACT	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.