FvH4_3g43860

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000379
Physical Location & Seq
Reverse (-)
36540664 .. 36552080
11417 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43860.t4

Sequence Viewer

Length: 3402 bp
ATGATTAACAGTGTTTCTCTCTTTCTGGTTTCAATGGCCTCCTCTGCATCTCTTCCTTCGTCCGCTGAATCATCATCATCATCATCAACAGCTCGTCCGTGCAAATATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGGAGGGGAATTACTTCTCAATTATATGATCAGCTGCATAACAAGAGAAGAATTGCAACATTCTTGGATGATCGAGATCTTGAAGTAGGGGATGCTATATCTCCCACTCTACTAAAAGCAATTGAAGAATCATGGTTTGCAATTGTTGTCCTTTCTCCAAACTATGCCTCTTCTACTTGGTGTTTGGAGGAACTTGCAAAGATCTGTGAGTGGATGGAAGGAAACAACAGAATTCTTCCACTTTTTTATAATGTCGAGCTTACTGATGTAAGACATCAAAAGGGATGTTTTGAAGAAGCTTTCAACAAGCATGAAAGCTCTGGGCGACACACATCAGAGAAGGTGCAGCGGTGGAAGGATGCTTTGAGCAAAGTGGCCAGTTTCTCTGGGTGGGATTCAAACAATTACAAAACTGATACAGAACTTGTGGAGAAAATTGTGGATTCTGTGTTCAAAAGAATACAACCTTTTGACGTTGAGTTTACAATGTCCACCCGAGATTTTGAAGCGTATGAAGCAACAAGAAAATCCATGGGTGAGATTATTAAGAAGCTTAAAGATGACAACGTCACTGCCATTGGGGTCTACGGAATGGGCGGAGTCGGCAAGACAACCCTGGTAAAACATGTCGCTGCTCAATTATGCAAAAATGGGATTTTTCATCATGTGGTTATGGTTGTTGTATCCCAAAGCCCCAACATCGAAAGAATTCAACACACATTATTGGCGAAGCTACAGGGCCCTGACTTCCAGTTACAAGAAAGTGAAAGAGCCTCTAGATTGTATAAAGAGATAATGAGGAAAACCAATGTCCTCATAATCTTGGACGACGTTTGGGGGTTTATAGATTTGTTAGAAATGGGAATTCCCAGCTATGACGAGCTCAAAAAATGCAATTCCAAAGTCTTACTCACCACCAGGAGTCGGCATGTTTGTCATTCCATGGACAGCCAAGCAAGCATTCCTCTCCATTTCTTATCAGAACCAGATTCCTGGAGCTTGTTTGTCAAGAAAACAAGAAGATCTTTTGATACCCCTGATTTTGATATTGTAGCGAGGAAGGTAGCTAGAGAATGTAGGGGTCTACCGATTGCCCTGATAGCTGTTGCAAGGGCACTTGGAGATAAAGATCTGGCGGAATGGCAATCAGCAGCTCAACAATTAAAGAAGTCGCAAATGGCCAGCCCTGACCATGATGACACAGCTTTCAAATGTTTGAAATTAAGCTATGATTACTTGAAAAATGAGGACTACAAATCATGCTTCTTGTTGTGTTGCCTATTTCCAGAAGACTATGACATCCGAATCGAAGACTTGTTCAAGTATGCAATTGGGAAAGGATTGTTTCGAGACACCGACACAATATATGAAGCCAGAGCAATAGCAGATACAGTGGTCAAGCACCTGATAGATTCTAGCTTGCTTTTGGATAGTGAATATTATGGTGGACGTGTAAGGATGCACGACGTCGCCCGGGATACAGCCATGGGAATTGCAAAATGTGAAGATGGACATGGGTTTTTGGTGAGAGCTGGATGTGGTCTTAAGGATTGGTCATGTCGATCACATGAAGACTACTATGCTATCTCACTAATGGAGAATAAACTTCACAGTCTACCCGAAGAGTTGATAGGTCCAAAACTGAAGATTTTATTACTACAAGGGAATCGGTATTTAAATGAGATCCCAGATACCTTTTCCCAAAGTCGGAATGAATTAAGAGTGTTAGATCTTAGCCGCACCAACATTTCATTGCTGCCCCAATCATTCAATCTCCTGACCAAGCTCCAAGCTTTGCATCTAGATTTTTGCTTGAAAGCAGTTGACATTTCCATAGTCGGAAAACTTAAGAAGCTTGAGATTCTTAGTATGAGACAATATCCTCTTACGGAGCTGTCTAGAGAAATAGGAAATTTGACCAATCTAAGGATGTTGGATATCGGTGGCAGTAGTTTTAAAGGTGGAGGTATTGTCACAATTCCATCTGAAGTGATATCAAAGCTGCATAAATTAGAAGAATTGTACATGATGTATTGTGGATTTGTGAACTGGGAAAGTCCAATTGAGGGAGAAGGAGATCAAATCAATATTGGCTTTGGTGAGCTAGCTGGTTTATCAAAGTTAAAAAATTTGCAAGTTTCCTTACCTAATGCAGAATGCATCCCTAAAAATGTCGAGGTCGAACCGGGTTGGTTTTACTTTGATATACGTATTGGCGGATGCACAAGCGATCCAAATTATCAGTTTGATCGTAAATCAAGATCCTTGCTTCTTCGTGAAATAACCATCAGTACCTTACCTGATTGGTTTATCAAAGCGGTGACAGAGAAAACAGAGAAGCTAGAGTACAAGCGCTGCAAAGGGATGAGTGACATTGTTATGGAATATGACCAGAGGAGGTTAGGTAAACTCAAACATCTCAGAGTATGTGGGGATTTAAGTGATTCCTATGTGTACTTGAAAGAGTTGATGAACACAACAAGACGAGTTGAAACAGGACCCGTGTTTGAGAATTTGGAAGAGTTGCGTCTGATATTTCTAATCCACCTGGAGGAGTTGTGTGTTGGTGAGTTACCACCTAGGTCTCTCTTAAATCTCAAGGTGTTTCATGTGTTTTTTGGTAAGATTTTGAGGAGTGTATCAGAATTTGTACAGAGACTACCAAATCTGGAGAAACTAGATTTAAACTGTGTGTATGAATTGGAATATGTGTTTAGATGCGAAGGGTTCGAGCCAGAACAATCAAAATTGAGGGAGATGCATTTGCTGTGTCTAAAAGCACCAAGAAACATATGTAATGGTCCTGCTCCACATGCAATGTTCCAGAGTCTTAAGATTTTGACGATTTACCGTTGCGAGCTGCTGCAAAGTCTGTTTGCATCTGATGTAGCTGAGTGTCTTGTTGAATTGGAAGACCTTCTTGTAGAGTGGTGTCCTTTGTTGGAAAGAGTAATGGAAGCAGTGAACAAGGAGAAGACGGTTCTACCAAAATTGAAGAACTTGGTTTTGAAGGAACTTCCTTTGTTGTATGGTGCAAGTGGTGCTGTTGACATTGAGTGTCCTTCTCTGGAACAATTGTTTGTGGTGGATTGCCCCAGTCTTCCATTTTTAACCTCTTCTGATCTCTTTGAAGGCTTGGAAAGTAGGAACCAGTTTTCATTTTCAACCTCCGCTTCTGACTACTTTGGCAGCACGTACCCAGTCCAACTTAATGATCTACAATTGTACGAGCTTTTAAGTGCCAGGCAACAGAGCATCTAG

Protein Analysis

1134

Amino Acids

128.9

Weight (kDa)

5.77

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 24 - 193 1.8e-49 TIR domain
TIR_2 PF13676 27 - 121 4.2e-14 TIR domain
NB-ARC PF00931 212 - 375 5e-32 NB-ARC domain
LRR_8 PF13855 582 - 640 2.5e-07 Leucine rich repeat
LRR_14 PF23598 584 - 715 1e-12 Leucine-rich repeat region
LRR_RPS2 PF23247 875 - 1014 3.2e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 967 - 1082 6.3e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
AatII GACGTC 1 cut(s) 1611
AccI GTMKAC 3 cut(s) 726, 1225, 1756
AciI CCGC 8 cut(s) 63, 490, 738, 1277, 1879, 2358, 2459, 3312
AclWI GGATC 3 cut(s) 1819, 2366, 2397
AcoI YGGCCR 2 cut(s) 516, 1320
AcsI RAATTY 7 cut(s) 372, 849, 1005, 2053, 2269, 2653, 2786
AcuI CTGAAG 2 cut(s) 1805, 2148
AcyI GRCGYC 1 cut(s) 1608
AfaI GTAC 7 cut(s) 2165, 2434, 2489, 2597, 2793, 3338, 3368
AfeI AGCGCT 1 cut(s) 2495
AfiI CCNNNNNNNGG 5 cut(s) 1065, 1848, 2067, 2207, 2692
AflII CTTAAG 3 cut(s) 1685, 1988, 2972
AflIII ACRYGT 2 cut(s) 766, 1591
AjiI CACGTC 1 cut(s) 1592
AjnI CCWGG 5 cut(s) 756, 1058, 1133, 2688, 3383
AjuI GAANNNNNNNTTGG 2 cut(s) 1086, 1118
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
Alw21I GWGCWC 1 cut(s) 1026
Alw26I GTCTC 4 cut(s) 1485, 2008, 2730, 2791
AlwI GGATC 3 cut(s) 1819, 2366, 2397
Ama87I CYCGRG 2 cut(s) 636, 1614
Aor51HI AGCGCT 1 cut(s) 2495
AoxI GGCC 4 cut(s) 36, 516, 880, 1320
ApaI GGGCCC 1 cut(s) 884
ApoI RAATTY 7 cut(s) 372, 849, 1005, 2053, 2269, 2653, 2786
Asp700I GAANNNNTTC 3 cut(s) 154, 849, 3057
AspA2I CCTAGG 1 cut(s) 2720
AspLEI GCGC 1 cut(s) 2496
AspS9I GGNCC 6 cut(s) 131, 880, 881, 1775, 2639, 2942
AsuC2I CCSGG 3 cut(s) 1615, 1616, 2328
AsuHPI GGTGA 6 cut(s) 689, 1045, 1678, 2252, 2473, 2720
AsuNHI GCTAGC 1 cut(s) 2245
AvaI CYCGRG 2 cut(s) 636, 1614
AvaII GGWCC 4 cut(s) 131, 1775, 2639, 2942
AvrII CCTAGG 1 cut(s) 2720
BaeGI GKGCMC 2 cut(s) 884, 1258
BaeI ACNNNNGTAYC 2 cut(s) 1521, 1554
BalI TGGCCA 2 cut(s) 518, 1322
BanII GRGCYC 2 cut(s) 884, 1026
BarI GAAGNNNNNNTAC 2 cut(s) 2471, 2503
BbsI GAAGAC 6 cut(s) 1437, 1458, 1719, 3060, 3122, 3233
Bbv12I GWGCWC 1 cut(s) 1026
BccI CCATC 4 cut(s) 349, 1643, 2131, 2435
BciT130I CCWGG 5 cut(s) 758, 1060, 1135, 2690, 3385
BciVI GTATCC 2 cut(s) 835, 1612
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 3 cut(s) 1615, 1616, 2328
BcoDI GTCTC 4 cut(s) 1485, 2008, 2730, 2791
BfmI CTRYAG 1 cut(s) 875
BfoI RGCGCY 1 cut(s) 2497
BfrI CTTAAG 3 cut(s) 1685, 1988, 2972
BfuI GTATCC 2 cut(s) 835, 1612
BglII AGATCT 5 cut(s) 217, 342, 1163, 1270, 1870
BlnI CCTAGG 1 cut(s) 2720
Bme1390I CCNGG 8 cut(s) 758, 1060, 1135, 1615, 1616, 2328, 2690, 3385
Bme18I GGWCC 4 cut(s) 131, 1775, 2639, 2942
BmeT110I CYCGRG 2 cut(s) 636, 1614
BmgBI CACGTC 1 cut(s) 1592
BmgT120I GGNCC 6 cut(s) 131, 880, 881, 1775, 2639, 2942
BmiI GGNNCC 4 cut(s) 132, 882, 2641, 3290
BmrFI CCNGG 8 cut(s) 758, 1060, 1135, 1615, 1616, 2328, 2690, 3385
BmrI ACTGGG 3 cut(s) 2200, 3231, 3335
BmtI GCTAGC 1 cut(s) 2249
BmuI ACTGGG 3 cut(s) 2200, 3231, 3335
BpiI GAAGAC 6 cut(s) 1437, 1458, 1719, 3060, 3122, 3233
BpmI CTGGAG 3 cut(s) 1156, 2711, 2831
BpuEI CTTGAG 2 cut(s) 2018, 2723
BpuMI CCSGG 3 cut(s) 1615, 1616, 2328
BsaAI YACGTR 2 cut(s) 2351, 3336
BsaBI GATNNNNATC 2 cut(s) 216, 1269
BsaHI GRCGYC 1 cut(s) 1608
BsaI GGTCTC 1 cut(s) 2730
BsaJI CCNNGG 6 cut(s) 672, 756, 1083, 1614, 1626, 2720
BsaXI ACNNNNNCTCC 6 cut(s) 2097, 2127, 2530, 2560, 2684, 2714
Bsc4I CCNNNNNNNGG 5 cut(s) 1065, 1848, 2067, 2207, 2692
Bse1I ACTGG 6 cut(s) 519, 892, 2195, 3237, 3292, 3341
Bse3DI GCAATG 2 cut(s) 1892, 2964
Bse8I GATNNNNATC 2 cut(s) 216, 1269
BseBI CCWGG 5 cut(s) 758, 1060, 1135, 2690, 3385
BseDI CCNNGG 6 cut(s) 672, 756, 1083, 1614, 1626, 2720
BseJI GATNNNNATC 2 cut(s) 216, 1269
BseLI CCNNNNNNNGG 5 cut(s) 1065, 1848, 2067, 2207, 2692
BseMI GCAATG 2 cut(s) 1892, 2964
BseMII CTCAG 2 cut(s) 2575, 3024
BseNI ACTGG 6 cut(s) 519, 892, 2195, 3237, 3292, 3341
BseRI GAGGAG 4 cut(s) 31, 2551, 2708, 2788
BseSI GKGCMC 2 cut(s) 884, 1258
BseYI CCCAGC 1 cut(s) 1010
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 4 cut(s) 38, 518, 882, 1322
BsiHKAI GWGCWC 1 cut(s) 1026
BsiHKCI CYCGRG 2 cut(s) 636, 1614
BsiSI CCGG 2 cut(s) 1615, 2327
BslI CCNNNNNNNGG 5 cut(s) 1065, 1848, 2067, 2207, 2692
BsmAI GTCTC 4 cut(s) 1485, 2008, 2730, 2791
BsmI GAATGC 2 cut(s) 1101, 2303
BsnI GGCC 4 cut(s) 38, 518, 882, 1322
Bso31I GGTCTC 1 cut(s) 2730
BsoBI CYCGRG 2 cut(s) 636, 1614
Bsp120I GGGCCC 1 cut(s) 880
Bsp1286I GDGCHC 3 cut(s) 884, 1026, 1258
Bsp1407I TGTACA 2 cut(s) 2163, 2791
Bsp19I CCATGG 3 cut(s) 672, 1083, 1626
BspACI CCGC 8 cut(s) 63, 490, 738, 1277, 1879, 2358, 2459, 3312
BspANI GGCC 4 cut(s) 38, 518, 882, 1322
BspCNI CTCAG 2 cut(s) 2574, 3025
BspLI GGNNCC 4 cut(s) 132, 882, 2641, 3290
BspOI GCTAGC 1 cut(s) 2249
BspPI GGATC 3 cut(s) 1819, 2366, 2397
BspTI CTTAAG 3 cut(s) 1685, 1988, 2972
BspTNI GGTCTC 1 cut(s) 2730
BsrDI GCAATG 2 cut(s) 1892, 2964
BsrGI TGTACA 2 cut(s) 2163, 2791
BsrI ACTGG 6 cut(s) 519, 892, 2195, 3237, 3292, 3341
BssECI CCNNGG 6 cut(s) 672, 756, 1083, 1614, 1626, 2720
BssNI GRCGYC 1 cut(s) 1608
BssT1I CCWWGG 4 cut(s) 672, 1083, 1626, 2720
Bst2UI CCWGG 5 cut(s) 758, 1060, 1135, 2690, 3385
Bst4CI ACNGT 6 cut(s) 11, 1534, 1754, 2831, 2993, 3121
Bst6I CTCTTC 5 cut(s) 57, 316, 1758, 2655, 3262
BstACI GRCGYC 1 cut(s) 1608
BstAFI CTTAAG 3 cut(s) 1685, 1988, 2972
BstAPI GCANNNNNTGC 1 cut(s) 3182
BstAUI TGTACA 2 cut(s) 2163, 2791
BstBAI YACGTR 2 cut(s) 2351, 3336
BstC8I GCNNGC 5 cut(s) 1099, 1324, 1562, 2247, 2999
BstDEI CTNAG 5 cut(s) 1874, 2006, 2066, 2561, 3033
BstDSI CCRYGG 3 cut(s) 672, 1083, 1626
BstH2I RGCGCY 1 cut(s) 2497
BstHHI GCGC 1 cut(s) 2496
BstMAI GTCTC 4 cut(s) 1485, 2008, 2730, 2791
BstMWI GCNNNNNNNGC 7 cut(s) 44, 656, 744, 1098, 1241, 2954, 3182
BstNI CCWGG 5 cut(s) 758, 1060, 1135, 2690, 3385
BstNSI RCATGY 3 cut(s) 770, 1073, 2957
BstSCI CCNGG 8 cut(s) 756, 1058, 1133, 1613, 1614, 2326, 2688, 3383
BstSFI CTRYAG 1 cut(s) 875
BstSLI GKGCMC 2 cut(s) 884, 1258
BstSNI TACGTA 1 cut(s) 2351
BstV2I GAAGAC 6 cut(s) 1437, 1458, 1719, 3060, 3122, 3233
BstX2I RGATCY 7 cut(s) 217, 342, 1163, 1270, 1824, 1870, 2402
BstXI CCANNNNNNTGG 1 cut(s) 1134
BstYI RGATCY 7 cut(s) 217, 342, 1163, 1270, 1824, 1870, 2402
BsuI GTATCC 2 cut(s) 835, 1612
BsuRI GGCC 4 cut(s) 38, 518, 882, 1322
BtgI CCRYGG 3 cut(s) 672, 1083, 1626
BtrI CACGTC 1 cut(s) 1592
BtsI GCAGTG 2 cut(s) 711, 3108
BtsIMutI CAGTG 4 cut(s) 16, 711, 1539, 3108
Cac8I GCNNGC 5 cut(s) 1099, 1324, 1562, 2247, 2999
CfoI GCGC 1 cut(s) 2496
Cfr13I GGNCC 6 cut(s) 131, 880, 881, 1775, 2639, 2942
Cfr9I CCCGGG 1 cut(s) 1614
CseI GACGC 1 cut(s) 2657
Csp6I GTAC 7 cut(s) 2164, 2433, 2488, 2596, 2792, 3337, 3367
CviQI GTAC 7 cut(s) 2164, 2433, 2488, 2596, 2792, 3337, 3367
DdeI CTNAG 5 cut(s) 1874, 2006, 2066, 2561, 3033
DraI TTTAAA 3 cut(s) 1818, 2098, 2826
EaeI YGGCCR 2 cut(s) 516, 1320
Eam1104I CTCTTC 5 cut(s) 57, 316, 1758, 2655, 3262
EarI CTCTTC 5 cut(s) 57, 316, 1758, 2655, 3262
EciI GGCGGA 3 cut(s) 753, 1292, 2373
Ecl136II GAGCTC 1 cut(s) 1024
Eco105I TACGTA 1 cut(s) 2351
Eco130I CCWWGG 4 cut(s) 672, 1083, 1626, 2720
Eco24I GRGCYC 2 cut(s) 884, 1026
Eco31I GGTCTC 1 cut(s) 2730
Eco32I GATATC 2 cut(s) 2080, 2136
Eco47I GGWCC 4 cut(s) 131, 1775, 2639, 2942
Eco47III AGCGCT 1 cut(s) 2495
Eco53kI GAGCTC 1 cut(s) 1024
Eco57I CTGAAG 2 cut(s) 1805, 2148
Eco88I CYCGRG 2 cut(s) 636, 1614
EcoICRI GAGCTC 1 cut(s) 1024
EcoO109I RGGNCCY 4 cut(s) 131, 880, 881, 2639
EcoRI GAATTC 3 cut(s) 372, 849, 1005
EcoRII CCWGG 5 cut(s) 756, 1058, 1133, 2688, 3383
EcoRV GATATC 2 cut(s) 2080, 2136
EcoT14I CCWWGG 4 cut(s) 672, 1083, 1626, 2720
EcoT22I ATGCAT 2 cut(s) 2303, 2904
EcoT38I GRGCYC 2 cut(s) 884, 1026
ErhI CCWWGG 4 cut(s) 672, 1083, 1626, 2720
FalI AAGNNNNNCTT 4 cut(s) 1150, 1182, 3045, 3077
FauNDI CATATG 1 cut(s) 2933
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 3 cut(s) 726, 1225, 1756
FriOI GRGCYC 2 cut(s) 884, 1026
GlaI GCGC 1 cut(s) 2495
GsaI CCCAGC 1 cut(s) 1014
GsuI CTGGAG 3 cut(s) 1156, 2711, 2831
HaeII RGCGCY 1 cut(s) 2497
HaeIII GGCC 4 cut(s) 38, 518, 882, 1322
HapII CCGG 2 cut(s) 1615, 2327
HgaI GACGC 1 cut(s) 2657
HhaI GCGC 1 cut(s) 2496
Hin1I GRCGYC 1 cut(s) 1608
Hin6I GCGC 1 cut(s) 2494
HinP1I GCGC 1 cut(s) 2494
HincII GTYRAC 2 cut(s) 1966, 3190
HindII GTYRAC 2 cut(s) 1966, 3190
HindIII AAGCTT 4 cut(s) 438, 692, 1932, 1994
HpaII CCGG 2 cut(s) 1615, 2327
HphI GGTGA 6 cut(s) 689, 1045, 1678, 2252, 2473, 2720
Hpy99I CGWCG 3 cut(s) 974, 1610, 1613
HpyCH4III ACNGT 6 cut(s) 11, 1534, 1754, 2831, 2993, 3121
HpyCH4IV ACGT 7 cut(s) 615, 708, 972, 1591, 1608, 2350, 3335
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 656, 744, 1098, 1241, 2954, 3182
HpyF3I CTNAG 5 cut(s) 1874, 2006, 2066, 2561, 3033
HpySE526I ACGT 7 cut(s) 615, 708, 972, 1591, 1608, 2350, 3335
Hsp92I GRCGYC 1 cut(s) 1608
HspAI GCGC 1 cut(s) 2494
Ksp22I TGATCA 1 cut(s) 169
LmnI GCTCC 4 cut(s) 1137, 1932, 2032, 2953
MaeII ACGT 7 cut(s) 615, 708, 972, 1591, 1608, 2350, 3335
MaeIII GTNAC 6 cut(s) 709, 894, 2113, 2461, 2510, 2712
MfeI CAATTG 6 cut(s) 261, 282, 1470, 2202, 3215, 3362
MflI RGATCY 7 cut(s) 217, 342, 1163, 1270, 1824, 1870, 2402
MhlI GDGCHC 3 cut(s) 884, 1026, 1258
MlsI TGGCCA 2 cut(s) 518, 1322
MluNI TGGCCA 2 cut(s) 518, 1322
MlyI GAGTC 3 cut(s) 750, 1072, 2977
MmeI TCCRAC 5 cut(s) 1829, 1960, 2055, 3063, 3370
Mox20I TGGCCA 2 cut(s) 518, 1322
Mph1103I ATGCAT 2 cut(s) 2303, 2904
MroXI GAANNNNTTC 3 cut(s) 154, 849, 3057
MscI TGGCCA 2 cut(s) 518, 1322
MslI CAYNNNNRTG 1 cut(s) 2519
Msp20I TGGCCA 2 cut(s) 518, 1322
MspA1I CMGCKG 3 cut(s) 65, 175, 490
MspCI CTTAAG 3 cut(s) 1685, 1988, 2972
MspI CCGG 2 cut(s) 1615, 2327
MspR9I CCNGG 8 cut(s) 758, 1060, 1135, 1615, 1616, 2328, 2690, 3385
MunI CAATTG 6 cut(s) 261, 282, 1470, 2202, 3215, 3362
Mva1269I GAATGC 2 cut(s) 1101, 2303
MvaI CCWGG 5 cut(s) 758, 1060, 1135, 2690, 3385
MwoI GCNNNNNNNGC 7 cut(s) 44, 656, 744, 1098, 1241, 2954, 3182
NciI CCSGG 3 cut(s) 1615, 1616, 2328
NcoI CCATGG 3 cut(s) 672, 1083, 1626
NdeI CATATG 1 cut(s) 2933
NheI GCTAGC 1 cut(s) 2245
NlaIV GGNNCC 4 cut(s) 132, 882, 2641, 3290
NmuCI GTSAC 4 cut(s) 709, 2113, 2461, 2510
NsiI ATGCAT 2 cut(s) 2303, 2904
NspI RCATGY 3 cut(s) 770, 1073, 2957
PciI ACATGT 1 cut(s) 766
PctI GAATGC 2 cut(s) 1101, 2303
PdmI GAANNNNTTC 3 cut(s) 154, 849, 3057
PflFI GACNNNGTC 1 cut(s) 707
PfoI TCCNGGA 1 cut(s) 1133
PleI GAGTC 3 cut(s) 749, 1071, 2976
PpsI GAGTC 3 cut(s) 749, 1071, 2976
Ppu21I YACGTR 2 cut(s) 2351, 3336
PpuMI RGGWCCY 2 cut(s) 131, 2639
PscI ACATGT 1 cut(s) 766
PsiI TTATAA 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 1026
Psp5II RGGWCCY 2 cut(s) 131, 2639
Psp6I CCWGG 5 cut(s) 756, 1058, 1133, 2688, 3383
PspFI CCCAGC 1 cut(s) 1010
PspGI CCWGG 5 cut(s) 756, 1058, 1133, 2688, 3383
PspN4I GGNNCC 4 cut(s) 132, 882, 2641, 3290
PspOMI GGGCCC 1 cut(s) 880
PspPI GGNCC 6 cut(s) 131, 880, 881, 1775, 2639, 2942
PspPPI RGGWCCY 2 cut(s) 131, 2639
PsuI RGATCY 7 cut(s) 217, 342, 1163, 1270, 1824, 1870, 2402
PsyI GACNNNGTC 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 7 cut(s) 2165, 2434, 2489, 2597, 2793, 3338, 3368
RsaNI GTAC 7 cut(s) 2164, 2433, 2488, 2596, 2792, 3337, 3367
RseI CAYNNNNRTG 1 cut(s) 2519
SacI GAGCTC 1 cut(s) 1026
Sau96I GGNCC 6 cut(s) 131, 880, 881, 1775, 2639, 2942
SchI GAGTC 3 cut(s) 750, 1072, 2977
ScrFI CCNGG 8 cut(s) 758, 1060, 1135, 1615, 1616, 2328, 2690, 3385
SduI GDGCHC 3 cut(s) 884, 1026, 1258
SfcI CTRYAG 1 cut(s) 875
SinI GGWCC 4 cut(s) 131, 1775, 2639, 2942
SmaI CCCGGG 1 cut(s) 1616
SmiI ATTTAAAT 1 cut(s) 1818
SmiMI CAYNNNNRTG 1 cut(s) 2519
SmlI CTYRAG 5 cut(s) 1685, 1988, 1997, 2738, 2972
SmoI CTYRAG 5 cut(s) 1685, 1988, 1997, 2738, 2972
SnaBI TACGTA 1 cut(s) 2351
SsiI CCGC 8 cut(s) 63, 490, 738, 1277, 1879, 2358, 2459, 3312
SspI AATATT 2 cut(s) 1580, 2230
SstI GAGCTC 1 cut(s) 1026
StyD4I CCNGG 8 cut(s) 756, 1058, 1133, 1613, 1614, 2326, 2688, 3383
StyI CCWWGG 4 cut(s) 672, 1083, 1626, 2720
SwaI ATTTAAAT 1 cut(s) 1818
TaaI ACNGT 6 cut(s) 11, 1534, 1754, 2831, 2993, 3121
TaiI ACGT 7 cut(s) 618, 711, 975, 1594, 1611, 2353, 3338
TaqI TCGA 9 cut(s) 214, 396, 843, 1449, 1489, 1702, 2316, 2322, 2871
TatI WGTACW 4 cut(s) 2163, 2487, 2595, 2791
TauI GCSGC 1 cut(s) 1881
TscAI CASTG 4 cut(s) 16, 718, 1539, 3108
TseFI GTSAC 4 cut(s) 709, 2113, 2461, 2510
Tsp45I GTSAC 4 cut(s) 709, 2113, 2461, 2510
TspGWI ACGGA 3 cut(s) 87, 744, 2045
TspMI CCCGGG 1 cut(s) 1614
TspRI CASTG 4 cut(s) 16, 718, 1539, 3108
Tth111I GACNNNGTC 1 cut(s) 707
Vha464I CTTAAG 3 cut(s) 1685, 1988, 2972
VpaK11BI GGWCC 4 cut(s) 131, 1775, 2639, 2942
XapI RAATTY 7 cut(s) 372, 849, 1005, 2053, 2269, 2653, 2786
XbaI TCTAGA 3 cut(s) 917, 1942, 2039
XceI RCATGY 3 cut(s) 770, 1073, 2957
XmaI CCCGGG 1 cut(s) 1614
XmaJI CCTAGG 1 cut(s) 2720
XmiI GTMKAC 3 cut(s) 726, 1225, 1756
XmnI GAANNNNTTC 3 cut(s) 154, 849, 3057
ZraI GACGTC 1 cut(s) 1609
Zsp2I ATGCAT 2 cut(s) 2303, 2904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.