Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378879.1

Orthogroup ID

OG0000379

Physical Location & Seq

Genomic Coordinates Forward (+)

17 .. 954

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgagaagaaacaaaacccttataatcttggacaacgtttgggatatattagacctgccaagcataggaattcccagttacaaggtgcttcagagtagcaactccaaagtcctacttaccacaaggagatggaatgcttgtcatgtcatgaggagccaagaaaatatcaccctcagtaccctatcgaaagaagattcatggacattgtttgtgaaatatgcaagaaagtcttttgagtcgacctatttcgaggatgttgcgaggaaggtagctagagaatgtggtggtctaccaattgcattgatagcagttgcaagggcacttggagataaagacctgacagaatgggaatacgcagctaaacggctagagaagtcgcgtgctgccaaccttgacgataatggagaagcatccgaatgcataaaactaagttatgatttcttgaaagatgaggactccaagtcatgcttcttgctttgttgcctattcccagaagactatgacatccgaatagaagacttgttcaagtatgggatcgggatcggattgtttcaagatactgacacaatccaagaagccagaggaaaagctggttcagtggccaagcaccttacacattctagcttgcttttggataggggaattgatggatgtgttaggatgcatgatgtcatccgggatacagccattcaaattgcacgatctgaagacgagcacggatttttcgtagaagctggctgtggtttgaagaattggccacgtcgattgcgtgaaggccattctgcaatttcagtcatgacgaacgacattcgcgagctacctgaagagctgtttactaagagtcgtcgatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

284

Amino Acids

32.29

Weight (kDa)

6.13

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica	MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata	RLG00000002871
rosa_multiflora	Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa	Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana	Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	63
AccI	GTMKAC	2 cut(s)	239, 289
AccII	CGCG	2 cut(s)	379, 813
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	2 cut(s)	542, 548
AcoI	YGGCCR	2 cut(s)	600, 755
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	3 cut(s)	74, 726, 843
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	445, 526, 554, 692, 748
AhdI	GACNNNNNGTC	1 cut(s)	460
AjiI	CACGTC	1 cut(s)	761
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	7 cut(s)	272, 359, 590, 624, 734, 817, 829
AluI	AGCT	7 cut(s)	272, 359, 590, 624, 734, 817, 829
Alw21I	GWGCWC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	542, 548
AoxI	GGCC	3 cut(s)	600, 755, 775
ApeKI	GCWGC	2 cut(s)	356, 383
ApoI	RAATTY	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	322
BalI	TGGCCA	2 cut(s)	602, 757
BbsI	GAAGAC	3 cut(s)	501, 522, 714
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	2 cut(s)	368, 370
BccI	CCATC	2 cut(s)	123, 641
BceAI	ACGGC	1 cut(s)	380
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciVI	GTATCC	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	677
BfaI	CTAG	3 cut(s)	273, 368, 621
BfuAI	ACCTGC	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	2 cut(s)	357, 384
BlsI	GCNGC	2 cut(s)	358, 385
Bme1390I	CCNGG	1 cut(s)	677
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	761
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	419, 651
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	3 cut(s)	501, 522, 714
BpuMI	CCSGG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	539
BseGI	GGATG	6 cut(s)	259, 410, 504, 656, 666, 672
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	368, 370
Bsh1236I	CGCG	2 cut(s)	379, 813
BshFI	GGCC	3 cut(s)	602, 757, 777
BsiHKAI	GWGCWC	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	676
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmI	GAATGC	2 cut(s)	139, 422
BsnI	GGCC	3 cut(s)	602, 757, 777
Bsp1286I	GDGCHC	2 cut(s)	322, 717
Bsp143I	GATC	4 cut(s)	534, 540, 701, 848
Bsp68I	TCGCGA	1 cut(s)	813
BspANI	GGCC	3 cut(s)	602, 757, 777
BspCNI	CTCAG	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	379, 813
BspHI	TCATGA	2 cut(s)	147, 795
BspLI	GGNNCC	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	542, 548
BspQI	GCTCTTC	1 cut(s)	819
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	4 cut(s)	534, 540, 701, 848
Bst6I	CTCTTC	1 cut(s)	819
BstC8I	GCNNGC	4 cut(s)	381, 626, 736, 815
BstDEI	CTNAG	4 cut(s)	173, 428, 837, 852
BstF5I	GGATG	6 cut(s)	259, 410, 504, 656, 666, 672
BstFNI	CGCG	2 cut(s)	379, 813
BstKTI	GATC	4 cut(s)	537, 543, 704, 851
BstMBI	GATC	4 cut(s)	534, 540, 701, 848
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	2 cut(s)	379, 813
BstV1I	GCAGC	2 cut(s)	368, 370
BstV2I	GAAGAC	3 cut(s)	501, 522, 714
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	3 cut(s)	602, 757, 777
BtrI	CACGTC	1 cut(s)	761
BtsCI	GGATG	6 cut(s)	259, 410, 504, 656, 666, 672
BtsIMutI	CAGTG	1 cut(s)	603
BtuMI	TCGCGA	1 cut(s)	813
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	4 cut(s)	381, 626, 736, 815
CciI	TCATGA	2 cut(s)	147, 795
Csp6I	GTAC	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	747, 782
CviAII	CATG	6 cut(s)	143, 148, 198, 465, 665, 796
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	4 cut(s)	173, 428, 837, 852
DpnI	GATC	4 cut(s)	536, 542, 703, 850
DpnII	GATC	4 cut(s)	534, 540, 701, 848
DriI	GACNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	600, 755
Eam1104I	CTCTTC	1 cut(s)	819
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	819
Eco57I	CTGAAG	3 cut(s)	74, 726, 843
EcoRI	GAATTC	1 cut(s)	69
EcoT22I	ATGCAT	2 cut(s)	422, 666
FaeI	CATG	6 cut(s)	146, 151, 201, 468, 668, 799
FalI	AAGNNNNNCTT	6 cut(s)	99, 131, 214, 246, 452, 484
FatI	CATG	6 cut(s)	142, 147, 197, 464, 664, 795
FblI	GTMKAC	2 cut(s)	239, 289
Fnu4HI	GCNGC	2 cut(s)	357, 384
FokI	GGATG	6 cut(s)	266, 397, 491, 659, 663, 673
Fsp4HI	GCNGC	2 cut(s)	357, 384
FspBI	CTAG	3 cut(s)	273, 368, 621
GluI	GCNGC	2 cut(s)	357, 384
HaeIII	GGCC	3 cut(s)	602, 757, 777
HapII	CCGG	1 cut(s)	676
Hin1II	CATG	6 cut(s)	146, 151, 201, 468, 668, 799
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	4 cut(s)	194, 236, 455, 841
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	3 cut(s)	240, 290, 834
Hpy188I	TCNGA	5 cut(s)	93, 415, 509, 545, 706
Hpy188III	TCNNGA	6 cut(s)	148, 442, 538, 554, 796, 812
Hpy8I	GTNNAC	3 cut(s)	240, 290, 834
Hpy99I	CGWCG	2 cut(s)	765, 849
HpyAV	CCTTC	2 cut(s)	259, 767
HpyCH4IV	ACGT	2 cut(s)	36, 760
HpyCH4V	TGCA	7 cut(s)	221, 299, 314, 420, 664, 698, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	4 cut(s)	173, 428, 837, 852
HpySE526I	ACGT	2 cut(s)	36, 760
Hsp92II	CATG	6 cut(s)	146, 151, 201, 468, 668, 799
Kzo9I	GATC	4 cut(s)	534, 540, 701, 848
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	9 cut(s)	68, 88, 350, 504, 576, 592, 689, 720, 834
Lsp1109I	GCAGC	2 cut(s)	368, 370
LweI	GCATC	2 cut(s)	419, 651
MaeI	CTAG	3 cut(s)	273, 368, 621
MaeII	ACGT	2 cut(s)	36, 760
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	536, 542, 703, 850
MboI	GATC	4 cut(s)	534, 540, 701, 848
MboII	GAAGA	7 cut(s)	18, 203, 506, 527, 719, 760, 836
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	322, 717
MlsI	TGGCCA	2 cut(s)	602, 757
MluCI	AATT	6 cut(s)	69, 294, 642, 693, 751, 786
MluNI	TGGCCA	2 cut(s)	602, 757
MlyI	GAGTC	3 cut(s)	245, 449, 850
MnlI	CCTC	6 cut(s)	144, 182, 244, 255, 445, 575
Mox20I	TGGCCA	2 cut(s)	602, 757
Mph1103I	ATGCAT	2 cut(s)	422, 666
MscI	TGGCCA	2 cut(s)	602, 757
MslI	CAYNNNNRTG	1 cut(s)	415
Msp20I	TGGCCA	2 cut(s)	602, 757
MspI	CCGG	1 cut(s)	676
MspR9I	CCNGG	1 cut(s)	677
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	2 cut(s)	139, 422
MvnI	CGCG	2 cut(s)	379, 813
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	4 cut(s)	534, 540, 701, 848
NlaIII	CATG	6 cut(s)	146, 151, 201, 468, 668, 799
NlaIV	GGNNCC	1 cut(s)	155
NruI	TCGCGA	1 cut(s)	813
NsiI	ATGCAT	2 cut(s)	422, 666
PagI	TCATGA	2 cut(s)	147, 795
PciSI	GCTCTTC	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	3 cut(s)	723, 766, 810
PctI	GAATGC	2 cut(s)	139, 422
PfeI	GAWTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	2 cut(s)	358, 385
PleI	GAGTC	3 cut(s)	244, 449, 849
PpsI	GAGTC	3 cut(s)	244, 449, 849
PsiI	TTATAA	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	813
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	415
SalI	GTCGAC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	819
SatI	GCNGC	2 cut(s)	357, 384
Sau3AI	GATC	4 cut(s)	534, 540, 701, 848
SchI	GAGTC	3 cut(s)	245, 449, 850
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	2 cut(s)	322, 717
SfaNI	GCATC	2 cut(s)	419, 651
SmiMI	CAYNNNNRTG	1 cut(s)	415
Sse9I	AATT	6 cut(s)	69, 294, 642, 693, 751, 786
SspMI	CTAG	3 cut(s)	273, 368, 621
StyD4I	CCNGG	1 cut(s)	675
TaiI	ACGT	2 cut(s)	39, 763
TaqI	TCGA	5 cut(s)	185, 239, 249, 763, 847
TasI	AATT	6 cut(s)	69, 294, 642, 693, 751, 786
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	603
TseI	GCWGC	2 cut(s)	356, 383
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	1 cut(s)	603
XapI	RAATTY	1 cut(s)	69
XmiI	GTMKAC	2 cut(s)	239, 289
XspI	CTAG	3 cut(s)	273, 368, 621
Zsp2I	ATGCAT	2 cut(s)	422, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.