Rroxscaffold_1G00003580

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
4387801 .. 4396752
8952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003580.1

Sequence Viewer

Length: 4044 bp
ATGTCGGACTATCTTCACTCTCCGGCTGTAGAGCCTTTTAGCCAACAGTCGCTGCAGCAGCGGCTCCAGGCGCTGATCGAGGGCGCCAGGGAGAGCTGGACCTATCTTCACTCTCCGGCTGTAGAGCCTTTTAGCCAACAGTCGCTGCAGCAGCGGCTCCAGGGGCTGATCGAGGGCGCCGGGGAGAGCTGGACCTATGCCATCTTCTGGCAGTCGTCGTACGACATGTCGGGAGATTCCGTTCTCGGGTGGGGCGACGGGTTCTACAAGGACGAGAGTGATAAATGGAAAGCGAGGCCCAAAAAGATGGCGTCATTAGTCGAGCAGGAGTACCGGAAGAAAGTGTTCAGGGACCTCAACTCTTTGATTTCCGGGGCCGACACCACCGCCAACGACGCGTTCGTAGATCAAGTCACTGGTACAGAATGGTTCTTCCTTGTTTCCATGACCCATAGTTTCGTCAACGGCGGCGGGTTGCCGGGTCAGGCCTTTTTCTATTCCAACCCGGTCTGGGTCACCGGGCCGGACCGCCTAGCGGCGTCCTCCTGCGAGCGGGCCCGCCAAGCTCAGGTCTCCGGCCTACAGACTATGGTCTGCGTCCCGACGGCGAATGGGGTGGTCGAATTGGGCTCGACGGAGCTGATATTCCAGAGCTCGGATGTGATGAACGAGGCCCGAGTATTGTTTGCTTTCAATAATCTTGAAGTCGGTTCTTGGCCTGTAGCTCCGGCCACTTCAGGACCGAGTAGCAGTAACCATCACATCTCTAAGCCGATTAAGTTTGACAACCACCCTAGTTCCAGTAGCTCTTCTGCTACTCAGTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGAAGGAGTATTATATCTGATTTATACGATCGGCTGCAAAACAAGAGAGGAATTAGAACATTTATGGATGATCCAGATCTTCGAGTAGGGGATGCTATTTCTCCCGCTCTCTTAAAGGCGATTGAAGAATCAAGGTTTGCAATCGTTGTTCTATCGAAAAATTATGCTCATTCTACTTGGTGTTTGGAGGAACTTACAAGTATTTGTCAGTGCATGAAAGACTTCAACAGAATTCTTCCACTTTTCTATAATGTGGAACCCTCTGATGTAAGGTACCGGAAAAGGAGTTTCCGAAGAGCTTTCGATAAGCATGAACGCTCTGGGCGACACACATCAGAGAAGGTGCAGCGGTGGAATGATGCGTTAAACAAAGTGGCCAGTTTTTCTGGGTGGCATACAAAGAATTTTAAGAGTGATAGAGATCTTGTTGACTCCATTGTGGAATTTGTGTGCAGTAAAGTACAACCTATTGAAATCGGGTTTACAATGTTCGCCGGAGATTTTCAAGCATTTGAAGCAACAAGAAAAAGCATGAATGAGGTTATGAAGGCGCTTCAAGATGACGAGGTCACTGCCCTTGGGGTCTATGGAATGGGAGGGGTCGGCAAGACAACCATGGTTAAACGTGTCGGCGCGCTAGCCCGCAAGAATGGAATTTTTAACCATGTACTTCTGGCTGTCATATCCCAAAGCCCTGACTCGAGAAATATTCAAGCCACATTGGCAGAGCTGCTGGGCTTCAAATTCAAGTGGGAGACAGAAATTGGAAGAGCCGCTGAGTTGCATGAGAAGATAATGAGTAAAAATAAGATCCTTATAATCCTGGACGACATGTGGGAGAGAATGGATTTGTCAAGAATAGGAATTCCCAGCTATGGCGAGCTCAAAAAATACAATTCTAAAGTCCTACTCACCACGAGGAGATTGCATGTTTGTAATTCCATGGACAGCCAAGCAAGCATTCCTCTCGATATCTTATCAGAAGAAGATTCTTGGAAATTGTTTATGAGAAATGCAGGAAGGTCTTTTGAATCCCCCAATTTTAATAATGTAGCAAGAAAGGTAGCTGGAGAATGTAGGGGTCTACCAATTGCATTGATAGCAGTTGCAAGGGCACTCAGAGATAAAGATCTGGCGGAATGGCAAAAAGCAGCTCAACGACTAGAGAAGTCGCAAATTGCCAACCCTGATGATAAGGGAGATGCATTCGAATGTATAAAATTAAGCTTTGATTACTTGAAAGATGAGGACCACAAGTCATGCTTCTTGCTCTGTTGCCTATTCCCAGAAGACCATGAAATCAATATAGAAGACTTGTTCAGGTATGCGATTGGAAAAGGATTGTTTCAAGATGCCGAAACAATGGACGAAGCCAGAGGAACAGCAGATTCAGTGGTCAAGTACCTGAAAGATTCTAGCTTGCTTTTGGAGAGTGAATACATTGGATGTGTAAAGATGCATGATGTCATCCGGGATACAGCCATGAATATTGCAAAATCTAAAGATGGGCATCGGTTTACGGTAAAAGTTGGCTGTGGTTTAGAGGATTGGCGGCCACGCGGATTACATGAAGGCTGCACTGCTATTTCACTAATGAGGAACAAAATTCGCAAGCTACCCGAAGAAGAGTTGGTATGTCCAAATCTCCAGCTTTTATTACTAAAACAGAATGCTGATTTAAATGAGATCCCAGAAAAGTTTATCCAAAATCTGAATAAATTAAGGCTCTTGGATCTTAGCAACACTAGTATTTCCGTATTTCCCCAATCATTCAGTCTCCTTACCAACCTTCAAGCTTTGAATTTAGATTTTTGCGAGCAATTGATTGACATATCCGTAGTGGGAAAACTTAAGAAGCTTGAAATTCTTAGTATGAGACAATGTCCTCTCAAGAAACTGTCGAGAGAAATAGGACATTTGACCAATCTAAGAATTTTGGATGTCAGTTCCGCTGAATTTCTCATAATTCCACCTAAAGTGATACCGAAGTTGCATAAATTAGAAGAACTGTATATACTAAACTGTGGATTTGAGGATTGGGGGAGTGAAGTTGAGAGAGAAAGAGAAGAAACTGAATTGGTTTTCCCTGTTGTGTCAAATTTGAAAAATTGGCAGGTTTGCATATCTGATGCTAAATGCACACCTAAATGTCTTGAGGTCAATGGAGAATATCATAATTCAAGATCCTTGTTTCTTAATGGAGCAACCATAAGTACCTTACCTGACTGGTTTATCAACACAGTGACAAAGAAAACAGAGAAGCTAGAGTACAGTCGCTGCAAAGGGATGACTGACATTCTTATGGAATATGACCATGGGAGGTTACATAAGCTCAAGCATCTTAGAGTATGTGGTTATTTTTGTGATTCCTATGTGTACTTGAAGGAGTTGATGAACACAACAAGACGAGTTCAAAAAGGACCAGTGTTTGTGAATTTGGAAGAGTTGCATCTGATAGATCTGATCCACCTTAATGAGTTGTGTGTTGGAGAGTTACCACATGGGTCTCTCTTCAATCTGAAGGTATTGCATATATCTTTTTGTAATATTTTGAAGAATGTATCAAAACTGGTACAGAGACTACCAAATCTGGAGAAACTATATTTAAATTGCATGGATGACCTGGAATATGTGTTTGGATGTGAAGGGTTTGAGCCAAAAGAATCAAAACTGAGAGAGATGCAGTTGTTGGGTCCAAATTCAGTGAAGAGCATTTGTAGTGGTCCTGCCCCACGCGTAATGTTCCAGAGTCTTAAAAGTTTGACTTTTTACCGTTGCGAGTTGCTGCAAAGTCTGTTCGCATATGATGTAGCCCAGAATCTTGTTCAATTGGAAGACCTTTTAGTAGAATGGTGCCCTTTGTTGGTAAGAGTAATTGAAGCAGTGAACAACGAGAAGACTACGATTCTTCGAAAAATGAAGAACTTGGTTTTCATGGGACTTCCCAAGTTGTATGGTGCAAGTGCTACTGTTGACATTGAGTGTCCTTCATTGGAACACTTGATTGTGGTGGATTGTCCCCGGTTTTCATTTTCAACCTCTTCCATAAGCAGGAACCCGTCTTCATTTTCAACCTCTGCTTCCGACTATTTTGGCAGCACCAACGTAGTCAAACTCAATGATCAACAACATCTTCAACTTCTATCATCAAGGTTGATGAACTTGTACAGGCTCAGTTAA

Protein Analysis

1347

Amino Acids

152.8

Weight (kDa)

6.54

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 49 - 229 8.9e-53 bHLH-MYC and R2R3-MYB transcription factors N-terminal
TIR PF01582 276 - 443 2.7e-46 TIR domain
TIR_2 PF13676 279 - 376 3.5e-16 TIR domain
NB-ARC PF00931 464 - 628 4.4e-28 NB-ARC domain
LRR_8 PF13855 835 - 893 2.5e-07 Leucine rich repeat
LRR_14 PF23598 837 - 1032 5.2e-12 Leucine-rich repeat region
LRR_RPS2 PF23247 1101 - 1240 5e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1682
Acc36I ACCTGC 1 cut(s) 2968
Acc65I GGTACC 1 cut(s) 1137
AccB1I GGYRCC 4 cut(s) 83, 176, 1137, 3717
AccB7I CCANNNNNTGG 1 cut(s) 207
AccBSI CCGCTC 2 cut(s) 553, 971
AccI GTMKAC 1 cut(s) 1948
AccII CGCG 4 cut(s) 398, 1499, 2424, 3600
AclWI GGATC 6 cut(s) 929, 1669, 2545, 2604, 3042, 3322
AcoI YGGCCR 3 cut(s) 729, 1239, 2417
AcuI CTGAAG 2 cut(s) 720, 3404
AcyI GRCGYC 4 cut(s) 84, 177, 311, 539
AflII CTTAAG 1 cut(s) 2714
AflIII ACRYGT 5 cut(s) 225, 396, 1489, 1695, 3598
AhdI GACNNNNNGTC 1 cut(s) 2119
AhlI ACTAGT 1 cut(s) 2609
AjnI CCWGG 5 cut(s) 66, 86, 159, 1686, 3486
AjuI GAANNNNNNNTTGG 6 cut(s) 383, 415, 1809, 1841, 3483, 3515
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
Alw21I GWGCWC 2 cut(s) 656, 1749
Alw26I GTCTC 6 cut(s) 577, 1613, 2645, 2734, 3375, 3436
AlwI GGATC 6 cut(s) 929, 1669, 2545, 2604, 3042, 3322
AlwNI CAGNNNCTG 5 cut(s) 52, 73, 145, 166, 3141
Ama87I CYCGRG 3 cut(s) 245, 675, 1564
ApaI GGGCCC 1 cut(s) 559
Asp700I GAANNNNTTC 2 cut(s) 344, 1085
Asp718I GGTACC 1 cut(s) 1137
AspLEI GCGC 6 cut(s) 73, 86, 179, 1417, 1499, 1501
AsuC2I CCSGG 7 cut(s) 181, 373, 480, 506, 520, 2336, 3886
AsuHPI GGTGA 2 cut(s) 508, 1768
AsuII TTCGAA 2 cut(s) 2073, 3775
AsuNHI GCTAGC 1 cut(s) 1501
AvaI CYCGRG 3 cut(s) 245, 675, 1564
BaeGI GKGCMC 3 cut(s) 559, 1981, 3722
BaeI ACNNNNGTAYC 2 cut(s) 2837, 2870
BalI TGGCCA 1 cut(s) 1241
BanI GGYRCC 4 cut(s) 83, 176, 1137, 3717
BanII GRGCYC 4 cut(s) 559, 632, 656, 1749
BarI GAAGNNNNNNTAC 2 cut(s) 3116, 3148
BauI CACGAG 1 cut(s) 1780
BbsI GAAGAC 5 cut(s) 2160, 2181, 3705, 3767, 3918
Bbv12I GWGCWC 2 cut(s) 656, 1749
BccI CCATC 4 cut(s) 209, 301, 765, 2363
BceAI ACGGC 2 cut(s) 481, 621
BcgI CGANNNNNNTGC 6 cut(s) 1418, 1452, 1771, 1805, 1813, 1847
BciT130I CCWGG 5 cut(s) 68, 88, 161, 1688, 3488
BciVI GTATCC 1 cut(s) 2332
BclI TGATCA 1 cut(s) 3985
BcnI CCSGG 7 cut(s) 181, 373, 480, 506, 520, 2336, 3886
BcoDI GTCTC 6 cut(s) 577, 1613, 2645, 2734, 3375, 3436
BcuI ACTAGT 1 cut(s) 2609
BfaI CTAG 7 cut(s) 533, 795, 1502, 2027, 2280, 2610, 3128
BfmI CTRYAG 6 cut(s) 27, 53, 120, 146, 581, 720
BfoI RGCGCY 4 cut(s) 74, 87, 180, 1418
BfrI CTTAAG 1 cut(s) 2714
BfuAI ACCTGC 1 cut(s) 2968
BfuI GTATCC 1 cut(s) 2332
BglI GCCNNNNNGGC 1 cut(s) 1586
BglII AGATCT 4 cut(s) 940, 1285, 1993, 3322
BmeRI GACNNNNNGTC 1 cut(s) 2119
BmeT110I CYCGRG 3 cut(s) 245, 675, 1564
BmtI GCTAGC 1 cut(s) 1505
BoxI GACNNNNGTC 1 cut(s) 590
BpiI GAAGAC 5 cut(s) 2160, 2181, 3705, 3767, 3918
BpmI CTGGAG 5 cut(s) 50, 143, 1953, 2495, 3476
Bpu10I CCTNAGC 1 cut(s) 567
Bpu14I TTCGAA 2 cut(s) 2073, 3775
BpuEI CTTGAG 3 cut(s) 2738, 3038, 3182
BpuMI CCSGG 7 cut(s) 181, 373, 480, 506, 520, 2336, 3886
BsaBI GATNNNNATC 4 cut(s) 939, 1284, 1992, 2373
BsaHI GRCGYC 4 cut(s) 84, 177, 311, 539
BsaI GGTCTC 2 cut(s) 577, 3375
BsaJI CCNNGG 9 cut(s) 87, 160, 180, 372, 1441, 1479, 1806, 3178, 3884
BsaWI WCCGGW 2 cut(s) 333, 1140
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 6 cut(s) 421, 801, 1242, 3095, 3287, 3438
Bse8I GATNNNNATC 4 cut(s) 939, 1284, 1992, 2373
BseBI CCWGG 5 cut(s) 68, 88, 161, 1688, 3488
BseDI CCNNGG 9 cut(s) 87, 160, 180, 372, 1441, 1479, 1806, 3178, 3884
BseGI GGATG 9 cut(s) 664, 937, 961, 2315, 2331, 2809, 3156, 3487, 3509
BseJI GATNNNNATC 4 cut(s) 939, 1284, 1992, 2373
BseMII CTCAG 5 cut(s) 581, 833, 1632, 1996, 3527
BseNI ACTGG 6 cut(s) 421, 801, 1242, 3095, 3287, 3438
BsePI GCGCGC 1 cut(s) 1497
BseRI GAGGAG 1 cut(s) 1798
BseSI GKGCMC 3 cut(s) 559, 1981, 3722
BseYI CCCAGC 2 cut(s) 1597, 1733
BsgI GTGCAG 3 cut(s) 1229, 1336, 2425
Bsh1236I CGCG 4 cut(s) 398, 1499, 2424, 3600
Bsh1285I CGRYCG 1 cut(s) 895
BshNI GGYRCC 4 cut(s) 83, 176, 1137, 3717
BsiEI CGRYCG 1 cut(s) 895
BsiHKAI GWGCWC 2 cut(s) 656, 1749
BsiHKCI CYCGRG 3 cut(s) 245, 675, 1564
BsiWI CGTACG 1 cut(s) 219
BslFI GGGAC 4 cut(s) 365, 584, 3816, 3867
BsmAI GTCTC 6 cut(s) 577, 1613, 2645, 2734, 3375, 3436
BsmFI GGGAC 4 cut(s) 365, 584, 3816, 3867
BsmI GAATGC 3 cut(s) 1824, 2069, 2539
Bso31I GGTCTC 2 cut(s) 577, 3375
BsoBI CYCGRG 3 cut(s) 245, 675, 1564
Bsp119I TTCGAA 2 cut(s) 2073, 3775
Bsp120I GGGCCC 1 cut(s) 555
Bsp1286I GDGCHC 6 cut(s) 559, 632, 656, 1749, 1981, 3722
Bsp1407I TGTACA 1 cut(s) 4029
Bsp19I CCATGG 3 cut(s) 1479, 1806, 3178
BspCNI CTCAG 5 cut(s) 580, 832, 1633, 1995, 3528
BspFNI CGCG 4 cut(s) 398, 1499, 2424, 3600
BspMAI CTGCAG 2 cut(s) 57, 150
BspMI ACCTGC 1 cut(s) 2968
BspOI GCTAGC 1 cut(s) 1505
BspPI GGATC 6 cut(s) 929, 1669, 2545, 2604, 3042, 3322
BspQI GCTCTTC 4 cut(s) 814, 1153, 1627, 3566
BspT104I TTCGAA 2 cut(s) 2073, 3775
BspT107I GGYRCC 4 cut(s) 83, 176, 1137, 3717
BspTI CTTAAG 1 cut(s) 2714
BspTNI GGTCTC 2 cut(s) 577, 3375
BsrBI CCGCTC 2 cut(s) 553, 971
BsrGI TGTACA 1 cut(s) 4029
BsrI ACTGG 6 cut(s) 421, 801, 1242, 3095, 3287, 3438
BssECI CCNNGG 9 cut(s) 87, 160, 180, 372, 1441, 1479, 1806, 3178, 3884
BssHII GCGCGC 1 cut(s) 1497
BssNI GRCGYC 4 cut(s) 84, 177, 311, 539
BssSI CACGAG 1 cut(s) 1780
BssT1I CCWWGG 4 cut(s) 1441, 1479, 1806, 3178
Bst2BI CACGAG 1 cut(s) 1780
Bst2UI CCWGG 5 cut(s) 68, 88, 161, 1688, 3488
Bst6I CTCTTC 8 cut(s) 814, 1153, 1627, 2484, 3300, 3380, 3566, 3910
BstACI GRCGYC 4 cut(s) 84, 177, 311, 539
BstAFI CTTAAG 1 cut(s) 2714
BstAUI TGTACA 1 cut(s) 4029
BstBI TTCGAA 2 cut(s) 2073, 3775
BstDSI CCRYGG 3 cut(s) 1479, 1806, 3178
BstEII GGTNACC 1 cut(s) 514
BstF5I GGATG 9 cut(s) 664, 937, 961, 2315, 2331, 2809, 3156, 3487, 3509
BstFNI CGCG 4 cut(s) 398, 1499, 2424, 3600
BstH2I RGCGCY 4 cut(s) 74, 87, 180, 1418
BstHHI GCGC 6 cut(s) 73, 86, 179, 1417, 1499, 1501
BstMAI GTCTC 6 cut(s) 577, 1613, 2645, 2734, 3375, 3436
BstMCI CGRYCG 1 cut(s) 895
BstNI CCWGG 5 cut(s) 68, 88, 161, 1688, 3488
BstNSI RCATGY 3 cut(s) 229, 1699, 1796
BstPAI GACNNNNGTC 1 cut(s) 590
BstPI GGTNACC 1 cut(s) 514
BstSFI CTRYAG 6 cut(s) 27, 53, 120, 146, 581, 720
BstSLI GKGCMC 3 cut(s) 559, 1981, 3722
BstUI CGCG 4 cut(s) 398, 1499, 2424, 3600
BstV2I GAAGAC 5 cut(s) 2160, 2181, 3705, 3767, 3918
BstX2I RGATCY 8 cut(s) 940, 1285, 1674, 1993, 2550, 2596, 3047, 3322
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 8 cut(s) 940, 1285, 1674, 1993, 2550, 2596, 3047, 3322
BsuI GTATCC 1 cut(s) 2332
BtgI CCRYGG 3 cut(s) 1479, 1806, 3178
BtsCI GGATG 9 cut(s) 664, 937, 961, 2315, 2331, 2809, 3156, 3487, 3509
BtsI GCAGTG 3 cut(s) 1434, 2442, 3753
BveI ACCTGC 1 cut(s) 2968
CaiI CAGNNNCTG 5 cut(s) 52, 73, 145, 166, 3141
CfoI GCGC 6 cut(s) 73, 86, 179, 1417, 1499, 1501
CpoI CGGWCCG 1 cut(s) 526
CseI GACGC 4 cut(s) 300, 404, 528, 586
CspI CGGWCCG 1 cut(s) 526
DinI GGCGCC 2 cut(s) 85, 178
DraI TTTAAA 2 cut(s) 2544, 3471
DriI GACNNNNNGTC 1 cut(s) 2119
EaeI YGGCCR 3 cut(s) 729, 1239, 2417
Eam1104I CTCTTC 8 cut(s) 814, 1153, 1627, 2484, 3300, 3380, 3566, 3910
Eam1105I GACNNNNNGTC 1 cut(s) 2119
EarI CTCTTC 8 cut(s) 814, 1153, 1627, 2484, 3300, 3380, 3566, 3910
EciI GGCGGA 1 cut(s) 2015
Ecl136II GAGCTC 2 cut(s) 654, 1747
Eco130I CCWWGG 4 cut(s) 1441, 1479, 1806, 3178
Eco147I AGGCCT 1 cut(s) 488
Eco24I GRGCYC 4 cut(s) 559, 632, 656, 1749
Eco31I GGTCTC 2 cut(s) 577, 3375
Eco32I GATATC 1 cut(s) 1837
Eco53kI GAGCTC 2 cut(s) 654, 1747
Eco57I CTGAAG 2 cut(s) 720, 3404
Eco88I CYCGRG 3 cut(s) 245, 675, 1564
Eco91I GGTNACC 1 cut(s) 514
EcoICRI GAGCTC 2 cut(s) 654, 1747
EcoO109I RGGNCCY 2 cut(s) 352, 854
EcoO65I GGTNACC 1 cut(s) 514
EcoRI GAATTC 2 cut(s) 1095, 1728
EcoRII CCWGG 5 cut(s) 66, 86, 159, 1686, 3486
EcoRV GATATC 1 cut(s) 1837
EcoT14I CCWWGG 4 cut(s) 1441, 1479, 1806, 3178
EcoT22I ATGCAT 2 cut(s) 2071, 2325
EcoT38I GRGCYC 4 cut(s) 559, 632, 656, 1749
EgeI GGCGCC 2 cut(s) 85, 178
EheI GGCGCC 2 cut(s) 85, 178
ErhI CCWWGG 4 cut(s) 1441, 1479, 1806, 3178
FalI AAGNNNNNCTT 4 cut(s) 2111, 2143, 3613, 3645
FaqI GGGAC 4 cut(s) 365, 584, 3816, 3867
FauI CCCGC 5 cut(s) 464, 546, 566, 976, 1514
FauNDI CATATG 1 cut(s) 3667
FbaI TGATCA 1 cut(s) 3985
FblI GTMKAC 1 cut(s) 1948
FokI GGATG 9 cut(s) 671, 944, 968, 2318, 2322, 2816, 3163, 3494, 3516
FriOI GRGCYC 4 cut(s) 559, 632, 656, 1749
FspBI CTAG 7 cut(s) 533, 795, 1502, 2027, 2280, 2610, 3128
GlaI GCGC 6 cut(s) 72, 85, 178, 1416, 1498, 1500
GsaI CCCAGC 2 cut(s) 1601, 1737
GsuI CTGGAG 5 cut(s) 50, 143, 1953, 2495, 3476
HaeII RGCGCY 4 cut(s) 74, 87, 180, 1418
HgaI GACGC 4 cut(s) 300, 404, 528, 586
HhaI GCGC 6 cut(s) 73, 86, 179, 1417, 1499, 1501
Hin1I GRCGYC 4 cut(s) 84, 177, 311, 539
Hin6I GCGC 6 cut(s) 71, 84, 177, 1415, 1497, 1499
HinP1I GCGC 6 cut(s) 71, 84, 177, 1415, 1497, 1499
HincII GTYRAC 3 cut(s) 463, 1294, 3838
HindII GTYRAC 3 cut(s) 463, 1294, 3838
HindIII AAGCTT 3 cut(s) 2089, 2658, 2720
HphI GGTGA 2 cut(s) 508, 1768
Hpy166II GTNNAC 8 cut(s) 463, 1294, 1347, 1949, 2382, 3241, 3751, 3838
Hpy8I GTNNAC 8 cut(s) 463, 1294, 1347, 1949, 2382, 3241, 3751, 3838
Hpy99I CGWCG 5 cut(s) 220, 260, 398, 607, 637
HpyCH4IV ACGT 2 cut(s) 1489, 3969
HpySE526I ACGT 2 cut(s) 1489, 3969
Hsp92I GRCGYC 4 cut(s) 84, 177, 311, 539
HspAI GCGC 6 cut(s) 71, 84, 177, 1415, 1497, 1499
KasI GGCGCC 2 cut(s) 83, 176
KpnI GGTACC 1 cut(s) 1141
Ksp22I TGATCA 1 cut(s) 3985
LguI GCTCTTC 4 cut(s) 814, 1153, 1627, 3566
LmnI GCTCC 5 cut(s) 69, 162, 637, 730, 3065
MaeI CTAG 7 cut(s) 533, 795, 1502, 2027, 2280, 2610, 3128
MaeII ACGT 2 cut(s) 1489, 3969
MaeIII GTNAC 7 cut(s) 412, 514, 752, 1432, 3106, 3186, 3357
MbiI CCGCTC 2 cut(s) 553, 971
MfeI CAATTG 3 cut(s) 1953, 2684, 3692
MflI RGATCY 8 cut(s) 940, 1285, 1674, 1993, 2550, 2596, 3047, 3322
MhlI GDGCHC 6 cut(s) 559, 632, 656, 1749, 1981, 3722
MlsI TGGCCA 1 cut(s) 1241
MluI ACGCGT 2 cut(s) 396, 3598
MluNI TGGCCA 1 cut(s) 1241
Mly113I GGCGCC 2 cut(s) 84, 177
MlyI GAGTC 3 cut(s) 1289, 1556, 3622
MmeI TCCRAC 3 cut(s) 525, 3331, 3972
Mox20I TGGCCA 1 cut(s) 1241
Mph1103I ATGCAT 2 cut(s) 2071, 2325
MroXI GAANNNNTTC 2 cut(s) 344, 1085
MscI TGGCCA 1 cut(s) 1241
MslI CAYNNNNRTG 4 cut(s) 2074, 3010, 3164, 3336
Msp20I TGGCCA 1 cut(s) 1241
MspA1I CMGCKG 5 cut(s) 61, 154, 1213, 1640, 2816
MspCI CTTAAG 1 cut(s) 2714
MunI CAATTG 3 cut(s) 1953, 2684, 3692
Mva1269I GAATGC 3 cut(s) 1824, 2069, 2539
MvaI CCWGG 5 cut(s) 68, 88, 161, 1688, 3488
MvnI CGCG 4 cut(s) 398, 1499, 2424, 3600
NarI GGCGCC 2 cut(s) 84, 177
NciI CCSGG 7 cut(s) 181, 373, 480, 506, 520, 2336, 3886
NcoI CCATGG 3 cut(s) 1479, 1806, 3178
NdeI CATATG 1 cut(s) 3667
NheI GCTAGC 1 cut(s) 1501
NmuCI GTSAC 4 cut(s) 412, 514, 1432, 3106
NsiI ATGCAT 2 cut(s) 2071, 2325
NspI RCATGY 3 cut(s) 229, 1699, 1796
NspV TTCGAA 2 cut(s) 2073, 3775
PaeR7I CTCGAG 1 cut(s) 1564
PauI GCGCGC 1 cut(s) 1497
PceI AGGCCT 1 cut(s) 488
PciI ACATGT 2 cut(s) 225, 1695
PciSI GCTCTTC 4 cut(s) 814, 1153, 1627, 3566
PcsI WCGNNNNNNNCGW 3 cut(s) 252, 399, 1186
PctI GAATGC 3 cut(s) 1824, 2069, 2539
PdmI GAANNNNTTC 2 cut(s) 344, 1085
Pfl23II CGTACG 1 cut(s) 219
PflFI GACNNNGTC 2 cut(s) 1430, 2745
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 2 cut(s) 1686, 2334
Ple19I CGATCG 1 cut(s) 895
PleI GAGTC 3 cut(s) 1289, 1556, 3621
PluTI GGCGCC 2 cut(s) 87, 180
PpsI GAGTC 3 cut(s) 1289, 1556, 3621
PpuMI RGGWCCY 2 cut(s) 352, 854
PscI ACATGT 2 cut(s) 225, 1695
PshAI GACNNNNGTC 1 cut(s) 590
PsiI TTATAA 1 cut(s) 1682
Psp124BI GAGCTC 2 cut(s) 656, 1749
Psp5II RGGWCCY 2 cut(s) 352, 854
Psp6I CCWGG 5 cut(s) 66, 86, 159, 1686, 3486
PspEI GGTNACC 1 cut(s) 514
PspFI CCCAGC 2 cut(s) 1597, 1733
PspGI CCWGG 5 cut(s) 66, 86, 159, 1686, 3486
PspLI CGTACG 1 cut(s) 219
PspOMI GGGCCC 1 cut(s) 555
PspPPI RGGWCCY 2 cut(s) 352, 854
PsrI GAACNNNNNNTAC 2 cut(s) 2862, 2894
PstI CTGCAG 2 cut(s) 57, 150
PstNI CAGNNNCTG 5 cut(s) 52, 73, 145, 166, 3141
PsuI RGATCY 8 cut(s) 940, 1285, 1674, 1993, 2550, 2596, 3047, 3322
PsyI GACNNNGTC 2 cut(s) 1430, 2745
PteI GCGCGC 1 cut(s) 1497
PvuI CGATCG 1 cut(s) 895
RseI CAYNNNNRTG 4 cut(s) 2074, 3010, 3164, 3336
Rsr2I CGGWCCG 1 cut(s) 526
RsrII CGGWCCG 1 cut(s) 526
SacI GAGCTC 2 cut(s) 656, 1749
SapI GCTCTTC 4 cut(s) 814, 1153, 1627, 3566
SchI GAGTC 3 cut(s) 1289, 1556, 3622
SduI GDGCHC 6 cut(s) 559, 632, 656, 1749, 1981, 3722
SfcI CTRYAG 6 cut(s) 27, 53, 120, 146, 581, 720
SfoI GGCGCC 2 cut(s) 85, 178
Sfr274I CTCGAG 1 cut(s) 1564
SfuI TTCGAA 2 cut(s) 2073, 3775
SlaI CTCGAG 1 cut(s) 1564
SmiI ATTTAAAT 2 cut(s) 2544, 3471
SmiMI CAYNNNNRTG 4 cut(s) 2074, 3010, 3164, 3336
SmlI CTYRAG 5 cut(s) 1564, 2714, 2753, 3017, 3197
SmoI CTYRAG 5 cut(s) 1564, 2714, 2753, 3017, 3197
SpeI ACTAGT 1 cut(s) 2609
SseBI AGGCCT 1 cut(s) 488
SspDI GGCGCC 2 cut(s) 83, 176
SspI AATATT 3 cut(s) 1573, 2353, 3412
SspMI CTAG 7 cut(s) 533, 795, 1502, 2027, 2280, 2610, 3128
SstI GAGCTC 2 cut(s) 656, 1749
StuI AGGCCT 1 cut(s) 488
StyI CCWWGG 4 cut(s) 1441, 1479, 1806, 3178
SwaI ATTTAAAT 2 cut(s) 2544, 3471
TaiI ACGT 2 cut(s) 1492, 3972
TaqII GACCGA 1 cut(s) 757
TatI WGTACW 5 cut(s) 1324, 1531, 3132, 3240, 4029
TauI GCSGC 6 cut(s) 64, 157, 471, 539, 1640, 2419
TseFI GTSAC 4 cut(s) 412, 514, 1432, 3106
Tsp45I GTSAC 4 cut(s) 412, 514, 1432, 3106
TspGWI ACGGA 4 cut(s) 229, 650, 2608, 2689
Tth111I GACNNNGTC 2 cut(s) 1430, 2745
Van91I CCANNNNNTGG 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 2714
XceI RCATGY 3 cut(s) 229, 1699, 1796
XhoI CTCGAG 1 cut(s) 1564
XmiI GTMKAC 1 cut(s) 1948
XmnI GAANNNNTTC 2 cut(s) 344, 1085
XspI CTAG 7 cut(s) 533, 795, 1502, 2027, 2280, 2610, 3128
Zsp2I ATGCAT 2 cut(s) 2071, 2325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.