Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000945.1

Orthogroup ID

OG0000379

Physical Location & Seq

Genomic Coordinates Forward (+)

14241 .. 17804

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000945.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3483 bp

atgcctttggtgattattgtggtaattgtgacatggatcggttgcttggccgttattaagagaatatggactccgctgaggcgtcggttcagttgcatggttcagaagcatgagccaatatggccggatactcaaataatggtcgaggtcaatgactttgcatctcctcagtggaagcatgatgtgtttttaagtttcaggggtcctgacactcgcaagggtatcacagttgaactattcaatcgactgcagatgaggggaattaaaacattcatggatgatagagatcttgaagtaggggatgttatttctcgcactctcatagcagccattgaaaaatcaaggtttgcaatcattgttctctcacgagactacgcttcttcttcttggtgtttggaggaacttacaaagatctgcgagtgcatgaaagaccagaacagaatttttccacttttttttcatgtggagccctctgatgtacgtcatcagaagaggagtttggataaagctttctctaaacatgaaacctctgggcgacatggattggagaagatgcagcagtggagggatgctttagaaaaggtggccagtttctcaggctggaatacacaggattataagactcacaaagaacttgttgacgtcattgtggaatttctccgcaataaagtgcgacctgatgcaattgagttcagtggagatttcgaagcatatgaagcaacaagaaaagccatggatgaggttatgaaggcgctaaaagatgacaaggtcactgctgtgggggtctacggcatgggaggtgttggaaagacaagcatggtgaaacatgtcggtgcacaaggctgcaaaaatggtaactttaaccataagattatggctgccatatctcaaagccctgacttgagaaaaattcaaggcacattggcagatctgttgggcgttaaattggaggaggagacagaaattggaagagccgctacattgcataaagagatgatgagaagagaaaaactccttataatcttggacgatgtttgggagagaatagagttgtcaaagatagggattcccagctacaaggagcttcaaatgtgcaagtccaaagtcctactcaccacaaggataaggaatgtctgtcatgtcatgagatgccagagaaagatcaccctcagtatcctatcaaaagaggattcttgggccttgtttgtgagaaatgtaggaatgccttttgaatccaccaaatttaagggtgtagctaagaaggtagctggagaatgtagaggtttaccaattgcattggtagcagttgcaagggcacttggagataaagacctggcggaatgggaaaaagcagctgaacgactagagaaatcacagcttgccaaccctgaccatgaggaagatgcattcaaatgtataagattaagctatgattacttgaaagatgaggaccacaagtcatgcttcttgctctgttgcctatacccagaagactatgacatccgactagaaaacttattcaagtatgcaatcggcaaaggattgtttcgagatgctgaaacaatcgaagaagccagaggaacagcagattctgtggtcaagtacctgaaagattctagcttgcttttggatagtgaaaaagatggatgtgtaaggatgcatgatgtcatccgggatacagccatgaagattgcaaaatctgaagatggacatgggtttttggtaaaagctgggtctggtttgaaggattggtcatgtccattacatgaaagctattctgcaatttcgctgatgaggaacgaaattcgcaagctacctgaagagttagtatgtccaaatctccagattttattactaaaacggaatgctgatttaaatgagatcccagaaaaatttatccgaagtctgaatgaattaagggtcttggatcttagcaacactagtatttctgtactaccccaatcattcagtctacttatcaacctccaagctttgtatttagatttttgccacaacatgattgacatttccatagttggaaaacttgagaagcttgaaattcttagtatgagagaatatcctctccaggaattatcgatagaaataggacacttgaccaatctaaggattttggatgtcaattccgctggttatgagggtggaggtattgtcacaattccatctaaagtgatatcaaagttgcatagattagaagaactgtatacactaaactgtggatttgaggattgggggagtaaagttgagagagaaggaggagaaatcgaattgggtttcactggtttgtcaaatttgaaaattttgcaggtttgcatatctgatgcaaagtgcatccctacaagtattgaggtcgaaccagagtgggtttactttcatatacttatcggcaaatacataagggatccatacaatcgatatcatcataactcaagatccttggttcttgacactaccatgagtaccttacctgattggtttatcaatgtggtgacaacgaagacagagacgctaaagtatgatcgctgcaaagggttgagtgacattgtcgtggaatatgaccatgggaggttgcatgaactcaagcatctcactgtatctgataatatacttgacccctatgagaacatgaaagagttgatgaacacaacgagacgggttcaaaaaggagcagtgtttgagaacttggaagagttgcatctgaaatgtctgctcaaacttgaagagttgtgtgttggtcagttaccacctgggtctctcatcaatcttaagttattgcatgtgtttttttgtgataacttggtgaatgtatcaaagttgttacagagactgccaaatctggagaaactatatttaaattgtatggatgaaatggaatttgtgtttggatctgaagggtttgaaccagaagagtcaaaactgagagagataaatttgttggatctacatgcactgagaagcatatgtaatgcttccccacgtttcatgttgcagagtcttaaaagtttgaccatataccgttgcaagttactgcgaagtctgtttgcatctgatgtagccgagtgtctttttcaattggaagacctttttgtggagcagtgccctttgttggaaagagtaattgaagcagtaaacaagaagacgaaggttcttccaaaattgaagaacttggttttgaagaaacttcatatgttgtatggtgcaactactcctgttgatattgagtgtccttcattggaaaacttgattgtggtggattgcccccagtttccatattcaacctcttcctctctcttcttcgccttcaaaagcatgttccagttttcaatttcaacctctgcttctgactacttttgcagcaagaacccagtacaactcaatgatcgacaactgtacaactttctacgtcgcaggtatgtctatgtgtcattaatgtacttaatttctcttttctttaatatttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

1160

Amino Acids

133.06

Weight (kDa)

6.6

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica	MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata	RLG00000002871
rosa_multiflora	Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa	Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana	Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	618, 1019
AatII	GACGTC	1 cut(s)	645
Acc36I	ACCTGC	2 cut(s)	2314, 3417
AccI	GTMKAC	3 cut(s)	786, 1972, 2222
AciI	CCGC	5 cut(s)	74, 661, 975, 1337, 2145
AclWI	GGATC	8 cut(s)	44, 1876, 1935, 2414, 2427, 2445, 2911, 2964
AcoI	YGGCCR	3 cut(s)	48, 122, 585
AcuI	CTGAAG	3 cut(s)	1722, 1839, 2928
AcyI	GRCGYC	2 cut(s)	82, 642
AfaI	GTAC	7 cut(s)	480, 1604, 1953, 2479, 3387, 3410, 3452
AfiI	CCNNNNNNNGG	3 cut(s)	2124, 3106, 3124
AflII	CTTAAG	1 cut(s)	2783
AflIII	ACRYGT	1 cut(s)	826
AhdI	GACNNNNNGTC	1 cut(s)	1456
AhlI	ACTAGT	1 cut(s)	1940
AjnI	CCWGG	3 cut(s)	1332, 2085, 2764
AjuI	GAANNNNNNNTTGG	4 cut(s)	482, 514, 2883, 2915
AleI	CACNNNNGTG	1 cut(s)	776
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	6 cut(s)	363, 950, 2516, 2662, 2775, 2836
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	8 cut(s)	44, 1876, 1935, 2414, 2427, 2445, 2911, 2964
AlwNI	CAGNNNCTG	2 cut(s)	1592, 2845
AoxI	GGCC	4 cut(s)	48, 122, 585, 1197
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	7 cut(s)	326, 556, 843, 878, 1352, 2541, 3372
AseI	ATTAAT	1 cut(s)	3446
AspLEI	GCGC	1 cut(s)	754
AspS9I	GGNCC	3 cut(s)	203, 1197, 1450
AsuC2I	CCSGG	1 cut(s)	1673
AsuHPI	GGTGA	6 cut(s)	22, 832, 1105, 1156, 2518, 2830
AsuII	TTCGAA	1 cut(s)	705
AvaII	GGWCC	2 cut(s)	203, 1450
BaeGI	GKGCMC	3 cut(s)	838, 1318, 3119
BalI	TGGCCA	1 cut(s)	587
BamHI	GGATCC	1 cut(s)	2419
BanII	GRGCYC	1 cut(s)	471
BarI	GAAGNNNNNNTAC	2 cut(s)	961, 993
BauI	CACGAG	1 cut(s)	366
BbsI	GAAGAC	4 cut(s)	1497, 2522, 3102, 3161
Bbv12I	GWGCWC	1 cut(s)	838
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	7 cut(s)	338, 568, 830, 865, 1364, 2528, 3384
BccI	CCATC	3 cut(s)	1637, 1700, 2188
BceAI	ACGGC	2 cut(s)	35, 805
BciT130I	CCWGG	3 cut(s)	1334, 2087, 2766
BciVI	GTATCC	3 cut(s)	121, 1184, 1669
BcnI	CCSGG	1 cut(s)	1673
BcoDI	GTCTC	6 cut(s)	363, 950, 2516, 2662, 2775, 2836
BcuI	ACTAGT	1 cut(s)	1940
BfaI	CTAG	4 cut(s)	1364, 1508, 1617, 1941
BfmI	CTRYAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	755
BfrI	CTTAAG	1 cut(s)	2783
BfuAI	ACCTGC	2 cut(s)	2314, 3417
BfuI	GTATCC	3 cut(s)	121, 1184, 1669
BglI	GCCNNNNNGGC	1 cut(s)	121
BglII	AGATCT	3 cut(s)	286, 411, 928
BisI	GCNGC	8 cut(s)	327, 557, 844, 879, 975, 1353, 2542, 3373
BlsI	GCNGC	8 cut(s)	328, 558, 845, 880, 976, 1354, 2543, 3374
Bme1390I	CCNGG	4 cut(s)	1334, 1673, 2087, 2766
Bme18I	GGWCC	2 cut(s)	203, 1450
BmeRI	GACNNNNNGTC	1 cut(s)	1456
BmgT120I	GGNCC	3 cut(s)	203, 1197, 1450
BmiI	GGNNCC	3 cut(s)	204, 468, 2421
BmrFI	CCNGG	4 cut(s)	1334, 1673, 2087, 2766
BmrI	ACTGGG	2 cut(s)	3274, 3377
BmuI	ACTGGG	2 cut(s)	3274, 3377
BpiI	GAAGAC	4 cut(s)	1497, 2522, 3102, 3161
BplI	GAGNNNNNCTC	2 cut(s)	996, 1028
BpmI	CTGGAG	4 cut(s)	1290, 1826, 2069, 2876
Bpu10I	CCTNAGC	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	705
BpuEI	CTTGAG	4 cut(s)	922, 2066, 2431, 2582
BpuMI	CCSGG	1 cut(s)	1673
Bsa29I	ATCGAT	2 cut(s)	2096, 2431
BsaBI	GATNNNNATC	1 cut(s)	285
BsaHI	GRCGYC	2 cut(s)	82, 642
BsaI	GGTCTC	1 cut(s)	2775
BsaJI	CCNNGG	4 cut(s)	732, 2454, 2578, 2765
BsaXI	ACNNNNNCTCC	2 cut(s)	2154, 2184
Bsc4I	CCNNNNNNNGG	3 cut(s)	2124, 3106, 3124
Bse1I	ACTGG	5 cut(s)	588, 2302, 3280, 3334, 3383
Bse3DI	GCAATG	1 cut(s)	980
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	1334, 2087, 2766
BseCI	ATCGAT	2 cut(s)	2096, 2431
BseDI	CCNNGG	4 cut(s)	732, 2454, 2578, 2765
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	2124, 3106, 3124
BseMI	GCAATG	1 cut(s)	980
BseMII	CTCAG	6 cut(s)	68, 182, 609, 1183, 2927, 2960
BseNI	ACTGG	5 cut(s)	588, 2302, 3280, 3334, 3383
BseRI	GAGGAG	5 cut(s)	156, 508, 965, 968, 2289
BseSI	GKGCMC	3 cut(s)	838, 1318, 3119
BseXI	GCAGC	7 cut(s)	338, 568, 830, 865, 1364, 2528, 3384
BseYI	CCCAGC	2 cut(s)	1070, 1730
BshFI	GGCC	4 cut(s)	50, 124, 587, 1199
BshVI	ATCGAT	2 cut(s)	2096, 2431
BsiHKAI	GWGCWC	1 cut(s)	838
BsiSI	CCGG	2 cut(s)	125, 1672
BslI	CCNNNNNNNGG	3 cut(s)	2124, 3106, 3124
BsmAI	GTCTC	6 cut(s)	363, 950, 2516, 2662, 2775, 2836
BsmBI	CGTCTC	2 cut(s)	2516, 2662
BsmI	GAATGC	3 cut(s)	1227, 1406, 1870
BsnI	GGCC	4 cut(s)	50, 124, 587, 1199
Bso31I	GGTCTC	1 cut(s)	2775
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1286I	GDGCHC	4 cut(s)	471, 838, 1318, 3119
Bsp1407I	TGTACA	1 cut(s)	3408
Bsp19I	CCATGG	2 cut(s)	732, 2578
BspACI	CCGC	5 cut(s)	74, 661, 975, 1337, 2145
BspANI	GGCC	4 cut(s)	50, 124, 587, 1199
BspCNI	CTCAG	6 cut(s)	69, 181, 608, 1182, 2928, 2961
BspDI	ATCGAT	2 cut(s)	2096, 2431
BspHI	TCATGA	1 cut(s)	1143
BspLI	GGNNCC	3 cut(s)	204, 468, 2421
BspMAI	CTGCAG	1 cut(s)	252
BspMI	ACCTGC	2 cut(s)	2314, 3417
BspPI	GGATC	8 cut(s)	44, 1876, 1935, 2414, 2427, 2445, 2911, 2964
BspQI	GCTCTTC	1 cut(s)	964
BspT104I	TTCGAA	1 cut(s)	705
BspTI	CTTAAG	1 cut(s)	2783
BspTNI	GGTCTC	1 cut(s)	2775
BsrDI	GCAATG	1 cut(s)	980
BsrGI	TGTACA	1 cut(s)	3408
BsrI	ACTGG	5 cut(s)	588, 2302, 3280, 3334, 3383
BssECI	CCNNGG	4 cut(s)	732, 2454, 2578, 2765
BssNAI	GTATAC	1 cut(s)	2223
BssNI	GRCGYC	2 cut(s)	82, 642
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	3 cut(s)	732, 2454, 2578
Bst1107I	GTATAC	1 cut(s)	2223
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	1334, 2087, 2766
Bst4CI	ACNGT	6 cut(s)	229, 2220, 2234, 2611, 3035, 3408
Bst6I	CTCTTC	9 cut(s)	485, 964, 997, 1815, 2700, 2733, 2919, 3304, 3314
BstACI	GRCGYC	2 cut(s)	82, 642
BstAFI	CTTAAG	1 cut(s)	2783
BstAUI	TGTACA	1 cut(s)	3408
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	3 cut(s)	1380, 1622, 1811
BstDSI	CCRYGG	2 cut(s)	732, 2578
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	1 cut(s)	754
BstMAI	GTCTC	6 cut(s)	363, 950, 2516, 2662, 2775, 2836
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 716, 1301
BstNI	CCWGG	3 cut(s)	1334, 2087, 2766
BstNSI	RCATGY	4 cut(s)	830, 2798, 2966, 3331
BstSCI	CCNGG	4 cut(s)	1332, 1671, 2085, 2764
BstSFI	CTRYAG	1 cut(s)	248
BstSLI	GKGCMC	3 cut(s)	838, 1318, 3119
BstV1I	GCAGC	7 cut(s)	338, 568, 830, 865, 1364, 2528, 3384
BstV2I	GAAGAC	4 cut(s)	1497, 2522, 3102, 3161
BstX2I	RGATCY	9 cut(s)	286, 411, 928, 1881, 1927, 2419, 2450, 2903, 2956
BstYI	RGATCY	9 cut(s)	286, 411, 928, 1881, 1927, 2419, 2450, 2903, 2956
BstZ17I	GTATAC	1 cut(s)	2223
Bsu15I	ATCGAT	2 cut(s)	2096, 2431
BsuI	GTATCC	3 cut(s)	121, 1184, 1669
BsuRI	GGCC	4 cut(s)	50, 124, 587, 1199
BsuTUI	ATCGAT	2 cut(s)	2096, 2431
BtgI	CCRYGG	2 cut(s)	732, 2578
BtsI	GCAGTG	4 cut(s)	566, 771, 2694, 3119
BtsIMutI	CAGTG	9 cut(s)	176, 566, 700, 771, 2295, 2607, 2694, 2966, 3119
BveI	ACCTGC	2 cut(s)	2314, 3417
Cac8I	GCNNGC	3 cut(s)	1380, 1622, 1811
CaiI	CAGNNNCTG	2 cut(s)	1592, 2845
CciI	TCATGA	1 cut(s)	1143
CfoI	GCGC	1 cut(s)	754
Cfr13I	GGNCC	3 cut(s)	203, 1197, 1450
ClaI	ATCGAT	2 cut(s)	2096, 2431
CseI	GACGC	2 cut(s)	71, 2533
Csp6I	GTAC	7 cut(s)	479, 1603, 1952, 2478, 3386, 3409, 3451
CviQI	GTAC	7 cut(s)	479, 1603, 1952, 2478, 3386, 3409, 3451
DraI	TTTAAA	2 cut(s)	1875, 2871
DriI	GACNNNNNGTC	1 cut(s)	1456
EaeI	YGGCCR	3 cut(s)	48, 122, 585
Eam1104I	CTCTTC	9 cut(s)	485, 964, 997, 1815, 2700, 2733, 2919, 3304, 3314
Eam1105I	GACNNNNNGTC	1 cut(s)	1456
EarI	CTCTTC	9 cut(s)	485, 964, 997, 1815, 2700, 2733, 2919, 3304, 3314
EciI	GGCGGA	1 cut(s)	1352
Eco130I	CCWWGG	3 cut(s)	732, 2454, 2578
Eco24I	GRGCYC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	2775
Eco32I	GATATC	2 cut(s)	2193, 2435
Eco47I	GGWCC	2 cut(s)	203, 1450
Eco57I	CTGAAG	3 cut(s)	1722, 1839, 2928
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	3 cut(s)	1332, 2085, 2764
EcoRV	GATATC	2 cut(s)	2193, 2435
EcoT14I	CCWWGG	3 cut(s)	732, 2454, 2578
EcoT22I	ATGCAT	2 cut(s)	1408, 1662
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	3 cut(s)	732, 2454, 2578
Esp3I	CGTCTC	2 cut(s)	2516, 2662
FalI	AAGNNNNNCTT	2 cut(s)	1448, 1480
FauNDI	CATATG	3 cut(s)	712, 2978, 3204
FblI	GTMKAC	3 cut(s)	786, 1972, 2222
Fnu4HI	GCNGC	8 cut(s)	327, 557, 844, 879, 975, 1353, 2542, 3373
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	8 cut(s)	327, 557, 844, 879, 975, 1353, 2542, 3373
FspBI	CTAG	4 cut(s)	1364, 1508, 1617, 1941
GlaI	GCGC	1 cut(s)	753
GluI	GCNGC	8 cut(s)	327, 557, 844, 879, 975, 1353, 2542, 3373
GsaI	CCCAGC	2 cut(s)	1074, 1734
GsuI	CTGGAG	4 cut(s)	1290, 1826, 2069, 2876
HaeII	RGCGCY	1 cut(s)	755
HaeIII	GGCC	4 cut(s)	50, 124, 587, 1199
HapII	CCGG	2 cut(s)	125, 1672
HgaI	GACGC	2 cut(s)	71, 2533
HhaI	GCGC	1 cut(s)	754
Hin1I	GRCGYC	2 cut(s)	82, 642
Hin6I	GCGC	1 cut(s)	752
HinP1I	GCGC	1 cut(s)	752
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	3 cut(s)	507, 1989, 2051
HinfI	GANTC	9 cut(s)	70, 622, 1066, 1190, 1232, 1589, 1613, 2927, 3010
HpaII	CCGG	2 cut(s)	125, 1672
HphI	GGTGA	6 cut(s)	22, 832, 1105, 1156, 2518, 2830
Hpy166II	GTNNAC	8 cut(s)	640, 787, 836, 1286, 1973, 2223, 2386, 3148
Hpy188III	TCNNGA	9 cut(s)	206, 290, 366, 1144, 1550, 1843, 2448, 2462, 2855
Hpy8I	GTNNAC	8 cut(s)	640, 787, 836, 1286, 1973, 2223, 2386, 3148
Hpy99I	CGWCG	2 cut(s)	87, 3426
HpyAV	CCTTC	8 cut(s)	742, 1255, 1738, 2264, 2903, 3154, 3255, 3328
HpyCH4III	ACNGT	6 cut(s)	229, 2220, 2234, 2611, 3035, 3408
HpyCH4IV	ACGT	4 cut(s)	481, 642, 2995, 3421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 716, 1301
HpySE526I	ACGT	4 cut(s)	481, 642, 2995, 3421
Hsp92I	GRCGYC	2 cut(s)	82, 642
HspAI	GCGC	1 cut(s)	752
LguI	GCTCTTC	1 cut(s)	964
LmnI	GCTCC	4 cut(s)	466, 1081, 2684, 3109
Lsp1109I	GCAGC	7 cut(s)	338, 568, 830, 865, 1364, 2528, 3384
MaeI	CTAG	4 cut(s)	1364, 1508, 1617, 1941
MaeII	ACGT	4 cut(s)	481, 642, 2995, 3421
MaeIII	GTNAC	9 cut(s)	28, 769, 854, 2170, 2506, 2555, 2757, 2835, 3042
MfeI	CAATTG	3 cut(s)	684, 1290, 3089
MflI	RGATCY	9 cut(s)	286, 411, 928, 1881, 1927, 2419, 2450, 2903, 2956
MhlI	GDGCHC	4 cut(s)	471, 838, 1318, 3119
MlsI	TGGCCA	1 cut(s)	587
MluNI	TGGCCA	1 cut(s)	587
MlyI	GAGTC	4 cut(s)	64, 616, 2936, 3019
MmeI	TCCRAC	5 cut(s)	784, 1528, 2017, 2934, 3105
Mox20I	TGGCCA	1 cut(s)	587
Mph1103I	ATGCAT	2 cut(s)	1408, 1662
MscI	TGGCCA	1 cut(s)	587
MslI	CAYNNNNRTG	5 cut(s)	776, 831, 1411, 2471, 2564
Msp20I	TGGCCA	1 cut(s)	587
MspA1I	CMGCKG	3 cut(s)	76, 1355, 2147
MspCI	CTTAAG	1 cut(s)	2783
MspI	CCGG	2 cut(s)	125, 1672
MspR9I	CCNGG	4 cut(s)	1334, 1673, 2087, 2766
MunI	CAATTG	3 cut(s)	684, 1290, 3089
Mva1269I	GAATGC	3 cut(s)	1227, 1406, 1870
MvaI	CCWGG	3 cut(s)	1334, 2087, 2766
MwoI	GCNNNNNNNGC	3 cut(s)	121, 716, 1301
NciI	CCSGG	1 cut(s)	1673
NcoI	CCATGG	2 cut(s)	732, 2578
NdeI	CATATG	3 cut(s)	712, 2978, 3204
NlaIV	GGNNCC	3 cut(s)	204, 468, 2421
NmeAIII	GCCGAG	1 cut(s)	3100
NmuCI	GTSAC	5 cut(s)	28, 769, 2170, 2506, 2555
NsiI	ATGCAT	2 cut(s)	1408, 1662
NspI	RCATGY	4 cut(s)	830, 2798, 2966, 3331
NspV	TTCGAA	1 cut(s)	705
OliI	CACNNNNGTG	1 cut(s)	776
PagI	TCATGA	1 cut(s)	1143
PciI	ACATGT	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	964
PctI	GAATGC	3 cut(s)	1227, 1406, 1870
PfeI	GAWTC	5 cut(s)	1066, 1190, 1232, 1589, 1613
PflFI	GACNNNGTC	2 cut(s)	767, 2561
PfoI	TCCNGGA	2 cut(s)	1671, 2085
PkrI	GCNGC	8 cut(s)	328, 558, 845, 880, 976, 1354, 2543, 3374
PleI	GAGTC	4 cut(s)	64, 616, 2935, 3018
PpsI	GAGTC	4 cut(s)	64, 616, 2935, 3018
PpuMI	RGGWCCY	1 cut(s)	203
PscI	ACATGT	1 cut(s)	826
PshBI	ATTAAT	1 cut(s)	3446
PsiI	TTATAA	2 cut(s)	618, 1019
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	3 cut(s)	1332, 2085, 2764
PspFI	CCCAGC	2 cut(s)	1070, 1730
PspGI	CCWGG	3 cut(s)	1332, 2085, 2764
PspN4I	GGNNCC	3 cut(s)	204, 468, 2421
PspPI	GGNCC	3 cut(s)	203, 1197, 1450
PspPPI	RGGWCCY	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	252
PstNI	CAGNNNCTG	2 cut(s)	1592, 2845
PsuI	RGATCY	9 cut(s)	286, 411, 928, 1881, 1927, 2419, 2450, 2903, 2956
PsyI	GACNNNGTC	2 cut(s)	767, 2561
PvuII	CAGCTG	1 cut(s)	1355
RsaI	GTAC	7 cut(s)	480, 1604, 1953, 2479, 3387, 3410, 3452
RsaNI	GTAC	7 cut(s)	479, 1603, 1952, 2478, 3386, 3409, 3451
RseI	CAYNNNNRTG	5 cut(s)	776, 831, 1411, 2471, 2564
SapI	GCTCTTC	1 cut(s)	964
SatI	GCNGC	8 cut(s)	327, 557, 844, 879, 975, 1353, 2542, 3373
Sau96I	GGNCC	3 cut(s)	203, 1197, 1450
SchI	GAGTC	4 cut(s)	64, 616, 2936, 3019
ScrFI	CCNGG	4 cut(s)	1334, 1673, 2087, 2766
SduI	GDGCHC	4 cut(s)	471, 838, 1318, 3119
SfcI	CTRYAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	705
SinI	GGWCC	2 cut(s)	203, 1450
SmiI	ATTTAAAT	2 cut(s)	1875, 2871
SmiMI	CAYNNNNRTG	5 cut(s)	776, 831, 1411, 2471, 2564
SmlI	CTYRAG	5 cut(s)	901, 2045, 2446, 2597, 2783
SmoI	CTYRAG	5 cut(s)	901, 2045, 2446, 2597, 2783
SpeI	ACTAGT	1 cut(s)	1940
SsiI	CCGC	5 cut(s)	74, 661, 975, 1337, 2145
SspI	AATATT	1 cut(s)	3475
SspMI	CTAG	4 cut(s)	1364, 1508, 1617, 1941
StyD4I	CCNGG	4 cut(s)	1332, 1671, 2085, 2764
StyI	CCWWGG	3 cut(s)	732, 2454, 2578
SwaI	ATTTAAAT	2 cut(s)	1875, 2871
TaaI	ACNGT	6 cut(s)	229, 2220, 2234, 2611, 3035, 3408
TaiI	ACGT	4 cut(s)	484, 645, 2998, 3424
TatI	WGTACW	4 cut(s)	1951, 3385, 3408, 3450
TauI	GCSGC	1 cut(s)	977
TfiI	GAWTC	5 cut(s)	1066, 1190, 1232, 1589, 1613
TscAI	CASTG	9 cut(s)	176, 566, 700, 778, 2302, 2614, 2694, 2973, 3119
TseFI	GTSAC	5 cut(s)	28, 769, 2170, 2506, 2555
TseI	GCWGC	7 cut(s)	326, 556, 843, 878, 1352, 2541, 3372
Tsp45I	GTSAC	5 cut(s)	28, 769, 2170, 2506, 2555
TspGWI	ACGGA	1 cut(s)	1876
TspRI	CASTG	9 cut(s)	176, 566, 700, 778, 2302, 2614, 2694, 2973, 3119
Tth111I	GACNNNGTC	2 cut(s)	767, 2561
Vha464I	CTTAAG	1 cut(s)	2783
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	2 cut(s)	203, 1450
VspI	ATTAAT	1 cut(s)	3446
XceI	RCATGY	4 cut(s)	830, 2798, 2966, 3331
XmiI	GTMKAC	3 cut(s)	786, 1972, 2222
XspI	CTAG	4 cut(s)	1364, 1508, 1617, 1941
ZraI	GACGTC	1 cut(s)	643
Zsp2I	ATGCAT	2 cut(s)	1408, 1662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.