FvH4_3g45680

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000379
Physical Location & Seq
Forward (+)
37860170 .. 37866831
6662 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45680.t1

Sequence Viewer

Length: 3333 bp
ATGGCCTCCTCCTCTTCATCATCGTCAACTCGCAGCTGGAAGTATGATGTCTTTTTGAGTTTCAGGGGTCCTGACACTCGCAAAGGGATTGCAAATGAGATCTGCAATCGACTTCGTAGAAGTGGCATTATAACGTTCATGGATGAGCATGGACTTCAAGTAGGGGATGTTATTTCTCCCACACTCATACAGGCAATTAAAGAGTCAAGGTTTGCAATCGTAATTTTCTCGCAAAATTACGCTTCTTCTGCTTGGTGTTTGGAGGAACTTCGAGAGATTTGTCTATCCATGGAAGACAACAAAATTTTGCCACTTTTTTTTGAAGTTGATCCTACTGATGTTCGATATCAGAAGAGGAGTTTCAAAGAAGCTTTCTCTAAGCACAATACCTCTGGGCGACATGAATCAGAGAAGGTGGAGCAATGGAGAGCTGCTCTAGAAAAAGTGGCCAATATCTCAGGGTGGAACACAAATGATTTCAAGACTCACGAAGAACTTGTTGACAACATTGTGGAATCTCTCCGCAGTAAAGTACCACCTGATGCAATTGAATTCACAGATGATTTCCAAGCATTTGGAGCAACAAAAGTAGCGACAGACAAGGTTATGAAGGCGCTAATAGATGACAAGATTACTGCCGTTGGTGTCTATGGCATGGGCGGCGTTGGAAAGACAAGCATGGTGAGACATGTAGCTGCACAAGCCTGCAGAAATGGTACTTTTAACCATTGGATCATGGCTGTCGTATCCCAAAACCTTGACTTGAAAAAAATTCAAGACACATTGGCAGATCTGCTGGGCTTCGAATTAAAAGAGAAGACAGAAGCTGGAAGTGCAGATAAGTTGCGTAAGGAGATCATGAGAAAAGAAAAACTCCTGATAATTGTGGACGATGTTTGGGAGAGAACAGAGTTGTCAAAGATAGGGATTCCCACCTACAATGAGCTTCAAAAGTTCAAGTCCAAAGTGCTACTCACCACCAGGAGATTGAATGTCTGTAATGCCATGAAGTGCCATGAAAAGATCAGCCTCAAAGTTCTCTCAGATCAAGATTCTTGGACCTTGTTCGTGAGAAATGCAGGAACAATATCTTTTGAGCCCACCTCATTTGAGAAAGTGGCAAGGAGGGTAGCTTTAGAGTGTAAGGGTCTACCGATTGCATTGATAGCTGTTGCAAGGGCACTCGCAGATGAGGACCAGGAGGAATGGGAGAAGGCAGCTGAACGACTAGAGCAGTCGCAATATGTCAATCCTAACCATGAGGAAGATGCATTCCAATGTGTAAGATTAAGCTATAATTACTTGAAAGATGGGGATTCCAAGTCATGCTTCTTGCTCTGTTGCCTGTTCCCAGAAGACCATAACATCAAAATAGAAGACTTGTTCCGGTACGCGATCGGAAAAAGATTGTTTCGAGATGCCCAAACAGTGGAAGTAGCCAGAGGAAAATTAGTTACAGTGGTCAAGTACCTGAAAAATTCTAGCTTGCTTTTGGATAGTAAGAAAGAAGGATGTGTTAAGATGCATGATGTCATCCGAGATACAGCCCTGAATATTGCACAATCTGAAGAGGGGCATCGGTTTTTTGTGAAAGCTGGCTGTGGTTTAAAGGGTTGGCTGCCACGCGGATTACATGAAGGCTGCACTGCTATTTCACTGATGTGGAACGAAATTCGCAATCTACCCGAAGAAGAGTTGGTATGTCCAAATCTCCAGATTTTATTAATAAACGGGAACAAGGAACTAAGTGAGATCCCAGAAAAGTTGATCCAGAATCTGAAAGAGTTAAGGGTCTTGGATCTTAGTTACACTAGTATATCCGTATTACCCCAATCATTTAGTCTCCTCACCAACCTCCAAGCTTTGTATTTAGATGATTGCGGCAAATTAATTGACATTTCTGTTGTGGGGAAACTTAACAAGCTTGAAATTCTTAGTATGAGAGACTGTCCTGGGGGGAAATTGTCGAGAGAAATAGGACATTTGACCAATCTAAGGATTTTGGACGTCAATCGCTTTAGGGCACACTTCCCAAGGAGAGGAATGGCTACAATTCCATCTAAAGTGATATCAAAGTTGCAAAAATTAGAAGAATTGTACATGGTGTACTGTGGCTATGAGGACGGGCGGTGTGTAGCTGAGGAACCAGAAGAAGAAACCCATATTATTAGGTTTGATGAGTTAGCTGGTTTATCAAATTTGAAAATATTGCAGGTTGGCTTATCCGATGAAAGTTTCATCCCTAAAAATGTTGAGGTCGCACCAGATTGGGATTACTTTTGTATAAGTATCATCGGCAGATGCACTAGCTCGATATACGGCCCCATTGTATACAAACAAGGAGATCGTAATTCAAGATCCTTGTTTCTTAATGAAGCAACCATCAGTGCCTTGCCTGATTGGTTTATCAACGCGGTGACAGAGAAAACAGAGAAGCTAGGGTATGTCTGCTGCGGAGGGATGAGTGACATTGTTATGGAACATGACCGTGGGAGGTTACATAAACTCAAGCATCTCACAGTTGCTGAGCAACAAGATGAGTTGAAAGAGTTGATGAACACAACAAGACGAGTTGAAACAGGACCAGTGTTTGAGAATTTGGAAGAGTTGCATCTGAAAGAACTGATCCACCTGGAGGAGTTGTGTGTTGGTGAGTTACCACCTAGGTCTCTCTCAAATCTCAAGGTGTTTCATGTGCTTTATGGTAAGATTTTGAGGAGTGTATCAGAATTTGTGCAGAGACTACCAAATCTGGAGAAACTAGATTTAAACTGTGTGTATGAATTGGAATATGTGTTTAGATGCGAAGGGGTCGAGCCAGAAGGCCCAGAACAACCAAAACTGAGAGAGATGCATTTGTTGCATCTAACAGCACTAAGAAGCATATGTAATGGTCCCGCTCCACATGCAATGTTCCAGAGTCTTAAGATTTTGACCATTTATTGTTGTGATCTGCTGCAAAGTCTGTTTGCATCTGATGTAGCTGAGTGTCTTGTTCAATTGGAAGACCTTCTTGTAGAGTGGTGTCCTAAGTTGGAAAGAGTAATGGAAGCAGTGAACAAGGAGAAGACGGTTCTACCAAAACTGAAGAATTTGGTTTTGAAGAATCTTCCTATTTTGTATGGTGCAATTGCTGCCGTTGATATTGAGTGTCCTTCATTGGAACACTTGATGGTGGTGGGTTGCCCCAAGCTTTTATTTTCAACCTCTTCCGATCTCTTCGAAGCCTTCAAAAGCAGGAACCAGGTTTCATTTTCAGCCTCCACTTCTGACCGAGTCCAACTCAATGATCCACAACTACACCGAACTCTACTTGACAGAACATCTTTGTGA

Protein Analysis

1111

Amino Acids

125.88

Weight (kDa)

5.95

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 14 - 177 2.1e-44 TIR domain
TIR_2 PF13676 17 - 112 3e-15 TIR domain
NB-ARC PF00931 199 - 360 1.1e-30 NB-ARC domain
LRR_8 PF13855 569 - 627 7.7e-11 Leucine rich repeat
LRR_14 PF23598 579 - 709 4.3e-17 Leucine-rich repeat region
LRR_RPS2 PF23247 867 - 1009 1.9e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AatII GACGTC 1 cut(s) 2010
Acc36I ACCTGC 1 cut(s) 2203
AccB7I CCANNNNNTGG 1 cut(s) 1429
AccBSI CCGCTC 1 cut(s) 2900
AccI GTMKAC 2 cut(s) 1150, 2331
AccII CGCG 3 cut(s) 1394, 1626, 2414
AciI CCGC 8 cut(s) 523, 660, 1626, 1881, 2128, 2414, 2454, 2898
AclI AACGTT 1 cut(s) 134
AclWI GGATC 8 cut(s) 323, 740, 1747, 1762, 1806, 2352, 2620, 3284
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 2 cut(s) 1587, 3107
AcyI GRCGYC 1 cut(s) 2007
AfaI GTAC 6 cut(s) 534, 718, 1391, 1469, 2099, 2108
AfiI CCNNNNNNNGG 4 cut(s) 1429, 1995, 2039, 2635
AflII CTTAAG 1 cut(s) 2924
AflIII ACRYGT 1 cut(s) 688
AhlI ACTAGT 1 cut(s) 1811
AjnI CCWGG 5 cut(s) 980, 1197, 1951, 2631, 3243
AjuI GAANNNNNNNTTGG 2 cut(s) 1313, 1345
AleI CACNNNNGTG 1 cut(s) 1660
Alw26I GTCTC 5 cut(s) 679, 1847, 1938, 2673, 2734
AlwI GGATC 8 cut(s) 323, 740, 1747, 1762, 1806, 2352, 2620, 3284
AlwNI CAGNNNCTG 3 cut(s) 827, 1777, 2525
AoxI GGCC 4 cut(s) 3, 447, 2320, 2824
ApeKI GCWGC 9 cut(s) 33, 431, 695, 1217, 1618, 1641, 2451, 2956, 3134
AseI ATTAAT 2 cut(s) 1724, 1889
Asp700I GAANNNNTTC 1 cut(s) 3009
AspA2I CCTAGG 1 cut(s) 2663
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 7 cut(s) 68, 1059, 1195, 2321, 2582, 2825, 2894
AsuHPI GGTGA 5 cut(s) 694, 967, 1840, 2428, 2663
AsuII TTCGAA 2 cut(s) 804, 3222
AvaII GGWCC 5 cut(s) 68, 1059, 1195, 2582, 2894
AvrII CCTAGG 1 cut(s) 2663
BaeGI GKGCMC 2 cut(s) 1183, 2026
BalI TGGCCA 1 cut(s) 449
BanII GRGCYC 1 cut(s) 1101
BbsI GAAGAC 6 cut(s) 300, 824, 1362, 1383, 3012, 3074
BbvCI CCTCAGC 1 cut(s) 2139
BbvI GCAGC 9 cut(s) 45, 418, 682, 1229, 1605, 1628, 2438, 2943, 3121
BccI CCATC 4 cut(s) 1304, 2065, 2390, 3166
BceAI ACGGC 3 cut(s) 623, 2335, 3122
BciT130I CCWGG 5 cut(s) 982, 1199, 1953, 2633, 3245
BciVI GTATCC 1 cut(s) 757
BcoDI GTCTC 5 cut(s) 679, 1847, 1938, 2673, 2734
BcuI ACTAGT 1 cut(s) 1811
BfaI CTAG 8 cut(s) 437, 1229, 1482, 1812, 2307, 2438, 2664, 2762
BfmI CTRYAG 1 cut(s) 706
BfoI RGCGCY 1 cut(s) 617
BfrI CTTAAG 1 cut(s) 2924
BfuAI ACCTGC 1 cut(s) 2203
BfuI GTATCC 1 cut(s) 757
BglII AGATCT 2 cut(s) 99, 790
BlnI CCTAGG 1 cut(s) 2663
BlpI GCTNAGC 1 cut(s) 2526
Bme1390I CCNGG 5 cut(s) 982, 1199, 1953, 2633, 3245
Bme18I GGWCC 5 cut(s) 68, 1059, 1195, 2582, 2894
BmgT120I GGNCC 7 cut(s) 68, 1059, 1195, 2321, 2582, 2825, 2894
BmiI GGNNCC 5 cut(s) 69, 2145, 2323, 2896, 3242
BmrFI CCNGG 5 cut(s) 982, 1199, 1953, 2633, 3245
BpiI GAAGAC 6 cut(s) 300, 824, 1362, 1383, 3012, 3074
BplI GAGNNNNNCTC 6 cut(s) 418, 450, 1088, 1120, 3267, 3299
BpmI CTGGAG 3 cut(s) 1697, 2654, 2774
Bpu10I CCTNAGC 1 cut(s) 2139
Bpu1102I GCTNAGC 1 cut(s) 2526
Bpu14I TTCGAA 2 cut(s) 804, 3222
BpuEI CTTGAG 2 cut(s) 2492, 2666
BsaHI GRCGYC 1 cut(s) 2007
BsaI GGTCTC 1 cut(s) 2673
BsaJI CCNNGG 5 cut(s) 288, 1952, 2033, 2488, 2663
BsaWI WCCGGW 1 cut(s) 1386
BsaXI ACNNNNNCTCC 2 cut(s) 2627, 2657
Bsc4I CCNNNNNNNGG 4 cut(s) 1429, 1995, 2039, 2635
Bse1I ACTGG 1 cut(s) 2585
Bse3DI GCAATG 2 cut(s) 428, 2916
BseBI CCWGG 5 cut(s) 982, 1199, 1953, 2633, 3245
BseDI CCNNGG 5 cut(s) 288, 1952, 2033, 2488, 2663
BseGI GGATG 6 cut(s) 148, 172, 1517, 1533, 2238, 2466
BseLI CCNNNNNNNGG 4 cut(s) 1429, 1995, 2039, 2635
BseMI GCAATG 2 cut(s) 428, 2916
BseMII CTCAG 6 cut(s) 471, 1056, 2130, 2517, 2834, 2976
BseNI ACTGG 1 cut(s) 2585
BseRI GAGGAG 4 cut(s) 370, 1835, 2651, 2731
BseSI GKGCMC 2 cut(s) 1183, 2026
BseXI GCAGC 9 cut(s) 45, 418, 682, 1229, 1605, 1628, 2438, 2943, 3121
BseYI CCCAGC 1 cut(s) 796
BsgI GTGCAG 4 cut(s) 681, 855, 1627, 2756
Bsh1236I CGCG 3 cut(s) 1394, 1626, 2414
Bsh1285I CGRYCG 1 cut(s) 1398
BshFI GGCC 4 cut(s) 5, 449, 2322, 2826
BsiEI CGRYCG 1 cut(s) 1398
BsiSI CCGG 1 cut(s) 1387
BslFI GGGAC 1 cut(s) 2880
BslI CCNNNNNNNGG 4 cut(s) 1429, 1995, 2039, 2635
BsmAI GTCTC 5 cut(s) 679, 1847, 1938, 2673, 2734
BsmFI GGGAC 1 cut(s) 2880
BsmI GAATGC 1 cut(s) 1271
BsnI GGCC 4 cut(s) 5, 449, 2322, 2826
Bso31I GGTCTC 1 cut(s) 2673
Bsp119I TTCGAA 2 cut(s) 804, 3222
Bsp1286I GDGCHC 3 cut(s) 1101, 1183, 2026
Bsp1407I TGTACA 1 cut(s) 2097
Bsp1720I GCTNAGC 1 cut(s) 2526
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 8 cut(s) 523, 660, 1626, 1881, 2128, 2414, 2454, 2898
BspANI GGCC 4 cut(s) 5, 449, 2322, 2826
BspCNI CTCAG 6 cut(s) 470, 1055, 2131, 2518, 2835, 2977
BspFNI CGCG 3 cut(s) 1394, 1626, 2414
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 5 cut(s) 69, 2145, 2323, 2896, 3242
BspMAI CTGCAG 1 cut(s) 710
BspMI ACCTGC 1 cut(s) 2203
BspPI GGATC 8 cut(s) 323, 740, 1747, 1762, 1806, 2352, 2620, 3284
BspT104I TTCGAA 2 cut(s) 804, 3222
BspTI CTTAAG 1 cut(s) 2924
BspTNI GGTCTC 1 cut(s) 2673
BsrBI CCGCTC 1 cut(s) 2900
BsrDI GCAATG 2 cut(s) 428, 2916
BsrGI TGTACA 1 cut(s) 2097
BsrI ACTGG 1 cut(s) 2585
BssECI CCNNGG 5 cut(s) 288, 1952, 2033, 2488, 2663
BssNAI GTATAC 1 cut(s) 2332
BssNI GRCGYC 1 cut(s) 2007
BssT1I CCWWGG 3 cut(s) 288, 2033, 2663
Bst1107I GTATAC 1 cut(s) 2332
Bst2UI CCWGG 5 cut(s) 982, 1199, 1953, 2633, 3245
Bst4CI ACNGT 8 cut(s) 1429, 1459, 1949, 2111, 2489, 2521, 2774, 3073
Bst6I CTCTTC 7 cut(s) 19, 347, 1563, 1686, 2598, 3214, 3224
BstACI GRCGYC 1 cut(s) 2007
BstAFI CTTAAG 1 cut(s) 2924
BstAPI GCANNNNNTGC 2 cut(s) 2860, 3134
BstAUI TGTACA 1 cut(s) 2097
BstBI TTCGAA 2 cut(s) 804, 3222
BstC8I GCNNGC 3 cut(s) 706, 1487, 1597
BstDSI CCRYGG 2 cut(s) 288, 2488
BstF5I GGATG 6 cut(s) 148, 172, 1517, 1533, 2238, 2466
BstFNI CGCG 3 cut(s) 1394, 1626, 2414
BstH2I RGCGCY 1 cut(s) 617
BstHHI GCGC 1 cut(s) 616
BstMAI GTCTC 5 cut(s) 679, 1847, 1938, 2673, 2734
BstMCI CGRYCG 1 cut(s) 1398
BstMWI GCNNNNNNNGC 9 cut(s) 248, 578, 660, 701, 833, 1166, 2860, 2906, 3134
BstNI CCWGG 5 cut(s) 982, 1199, 1953, 2633, 3245
BstNSI RCATGY 2 cut(s) 692, 2909
BstSCI CCNGG 5 cut(s) 980, 1197, 1951, 2631, 3243
BstSFI CTRYAG 1 cut(s) 706
BstSLI GKGCMC 2 cut(s) 1183, 2026
BstUI CGCG 3 cut(s) 1394, 1626, 2414
BstV1I GCAGC 9 cut(s) 45, 418, 682, 1229, 1605, 1628, 2438, 2943, 3121
BstV2I GAAGAC 6 cut(s) 300, 824, 1362, 1383, 3012, 3074
BstX2I RGATCY 5 cut(s) 99, 790, 1752, 1798, 2357
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 5 cut(s) 99, 790, 1752, 1798, 2357
BstZ17I GTATAC 1 cut(s) 2332
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 4 cut(s) 5, 449, 2322, 2826
BtgI CCRYGG 2 cut(s) 288, 2488
BtsCI GGATG 6 cut(s) 148, 172, 1517, 1533, 2238, 2466
BtsI GCAGTG 2 cut(s) 1644, 3060
BtsIMutI CAGTG 7 cut(s) 1434, 1464, 1644, 1655, 2392, 2592, 3060
BveI ACCTGC 1 cut(s) 2203
Cac8I GCNNGC 3 cut(s) 706, 1487, 1597
CaiI CAGNNNCTG 3 cut(s) 827, 1777, 2525
CciI TCATGA 1 cut(s) 858
CfoI GCGC 1 cut(s) 616
Cfr13I GGNCC 7 cut(s) 68, 1059, 1195, 2321, 2582, 2825, 2894
CsiI ACCWGGT 1 cut(s) 3243
Csp6I GTAC 6 cut(s) 533, 717, 1390, 1468, 2098, 2107
CspCI CAANNNNNGTGG 2 cut(s) 1090, 1125
CviQI GTAC 6 cut(s) 533, 717, 1390, 1468, 2098, 2107
DraI TTTAAA 2 cut(s) 1608, 2769
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 7 cut(s) 19, 347, 1563, 1686, 2598, 3214, 3224
EarI CTCTTC 7 cut(s) 19, 347, 1563, 1686, 2598, 3214, 3224
Eco130I CCWWGG 3 cut(s) 288, 2033, 2663
Eco24I GRGCYC 1 cut(s) 1101
Eco31I GGTCTC 1 cut(s) 2673
Eco32I GATATC 2 cut(s) 347, 2070
Eco47I GGWCC 5 cut(s) 68, 1059, 1195, 2582, 2894
Eco57I CTGAAG 2 cut(s) 1587, 3107
EcoO109I RGGNCCY 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 5 cut(s) 980, 1197, 1951, 2631, 3243
EcoRV GATATC 2 cut(s) 347, 2070
EcoT14I CCWWGG 3 cut(s) 288, 2033, 2663
EcoT22I ATGCAT 3 cut(s) 1273, 1527, 2856
EcoT38I GRGCYC 1 cut(s) 1101
ErhI CCWWGG 3 cut(s) 288, 2033, 2663
FalI AAGNNNNNCTT 4 cut(s) 1313, 1345, 2997, 3029
FaqI GGGAC 1 cut(s) 2880
FauI CCCGC 1 cut(s) 2905
FauNDI CATATG 1 cut(s) 2885
FblI GTMKAC 2 cut(s) 1150, 2331
FokI GGATG 6 cut(s) 155, 179, 1520, 1524, 2225, 2473
FriOI GRGCYC 1 cut(s) 1101
FspBI CTAG 8 cut(s) 437, 1229, 1482, 1812, 2307, 2438, 2664, 2762
GlaI GCGC 1 cut(s) 615
GsaI CCCAGC 1 cut(s) 800
GsuI CTGGAG 3 cut(s) 1697, 2654, 2774
HaeII RGCGCY 1 cut(s) 617
HaeIII GGCC 4 cut(s) 5, 449, 2322, 2826
HapII CCGG 1 cut(s) 1387
HhaI GCGC 1 cut(s) 616
Hin1I GRCGYC 1 cut(s) 2007
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HincII GTYRAC 2 cut(s) 27, 502
HindII GTYRAC 2 cut(s) 27, 502
HindIII AAGCTT 4 cut(s) 369, 1860, 1922, 3191
HpaII CCGG 1 cut(s) 1387
HphI GGTGA 5 cut(s) 694, 967, 1840, 2428, 2663
Hpy166II GTNNAC 7 cut(s) 27, 502, 889, 1151, 2107, 2332, 3058
Hpy8I GTNNAC 7 cut(s) 27, 502, 889, 1151, 2107, 2332, 3058
HpyCH4III ACNGT 8 cut(s) 1429, 1459, 1949, 2111, 2489, 2521, 2774, 3073
HpyCH4IV ACGT 2 cut(s) 134, 2007
HpyF10VI GCNNNNNNNGC 9 cut(s) 248, 578, 660, 701, 833, 1166, 2860, 2906, 3134
HpySE526I ACGT 2 cut(s) 134, 2007
Hsp92I GRCGYC 1 cut(s) 2007
HspAI GCGC 1 cut(s) 614
LmnI GCTCC 3 cut(s) 418, 578, 2905
Lsp1109I GCAGC 9 cut(s) 45, 418, 682, 1229, 1605, 1628, 2438, 2943, 3121
MabI ACCWGGT 1 cut(s) 3243
MaeI CTAG 8 cut(s) 437, 1229, 1482, 1812, 2307, 2438, 2664, 2762
MaeII ACGT 2 cut(s) 134, 2007
MaeIII GTNAC 6 cut(s) 1453, 1805, 2416, 2465, 2496, 2655
MbiI CCGCTC 1 cut(s) 2900
MfeI CAATTG 3 cut(s) 546, 2999, 3129
MflI RGATCY 5 cut(s) 99, 790, 1752, 1798, 2357
MhlI GDGCHC 3 cut(s) 1101, 1183, 2026
MlsI TGGCCA 1 cut(s) 449
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 4 cut(s) 212, 478, 2929, 3285
MmeI TCCRAC 3 cut(s) 646, 3015, 3304
Mox20I TGGCCA 1 cut(s) 449
Mph1103I ATGCAT 3 cut(s) 1273, 1527, 2856
MroXI GAANNNNTTC 1 cut(s) 3009
MscI TGGCCA 1 cut(s) 449
MslI CAYNNNNRTG 5 cut(s) 1276, 1660, 2474, 2487, 3328
Msp20I TGGCCA 1 cut(s) 449
MspA1I CMGCKG 2 cut(s) 36, 1220
MspCI CTTAAG 1 cut(s) 2924
MspI CCGG 1 cut(s) 1387
MspR9I CCNGG 5 cut(s) 982, 1199, 1953, 2633, 3245
MunI CAATTG 3 cut(s) 546, 2999, 3129
Mva1269I GAATGC 1 cut(s) 1271
MvaI CCWGG 5 cut(s) 982, 1199, 1953, 2633, 3245
MvnI CGCG 3 cut(s) 1394, 1626, 2414
MwoI GCNNNNNNNGC 9 cut(s) 248, 578, 660, 701, 833, 1166, 2860, 2906, 3134
NcoI CCATGG 1 cut(s) 288
NdeI CATATG 1 cut(s) 2885
NlaIV GGNNCC 5 cut(s) 69, 2145, 2323, 2896, 3242
NmuCI GTSAC 2 cut(s) 2416, 2465
NsiI ATGCAT 3 cut(s) 1273, 1527, 2856
NspI RCATGY 2 cut(s) 692, 2909
NspV TTCGAA 2 cut(s) 804, 3222
OliI CACNNNNGTG 1 cut(s) 1660
PagI TCATGA 1 cut(s) 858
PciI ACATGT 1 cut(s) 688
PctI GAATGC 1 cut(s) 1271
PdmI GAANNNNTTC 1 cut(s) 3009
PfeI GAWTC 7 cut(s) 404, 515, 928, 1052, 1316, 1774, 3106
PflFI GACNNNGTC 1 cut(s) 3275
PflMI CCANNNNNTGG 1 cut(s) 1429
Ple19I CGATCG 1 cut(s) 1398
PleI GAGTC 4 cut(s) 211, 478, 2928, 3284
PpsI GAGTC 4 cut(s) 211, 478, 2928, 3284
PpuMI RGGWCCY 1 cut(s) 68
PscI ACATGT 1 cut(s) 688
PshBI ATTAAT 2 cut(s) 1724, 1889
PsiI TTATAA 1 cut(s) 131
Psp1406I AACGTT 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 5 cut(s) 980, 1197, 1951, 2631, 3243
PspFI CCCAGC 1 cut(s) 796
PspGI CCWGG 5 cut(s) 980, 1197, 1951, 2631, 3243
PspN4I GGNNCC 5 cut(s) 69, 2145, 2323, 2896, 3242
PspPI GGNCC 7 cut(s) 68, 1059, 1195, 2321, 2582, 2825, 2894
PspPPI RGGWCCY 1 cut(s) 68
PstI CTGCAG 1 cut(s) 710
PstNI CAGNNNCTG 3 cut(s) 827, 1777, 2525
PsuI RGATCY 5 cut(s) 99, 790, 1752, 1798, 2357
PsyI GACNNNGTC 1 cut(s) 3275
PvuI CGATCG 1 cut(s) 1398
PvuII CAGCTG 2 cut(s) 36, 1220
RsaI GTAC 6 cut(s) 534, 718, 1391, 1469, 2099, 2108
RsaNI GTAC 6 cut(s) 533, 717, 1390, 1468, 2098, 2107
RseI CAYNNNNRTG 5 cut(s) 1276, 1660, 2474, 2487, 3328
Sau96I GGNCC 7 cut(s) 68, 1059, 1195, 2321, 2582, 2825, 2894
SchI GAGTC 4 cut(s) 212, 478, 2929, 3285
ScrFI CCNGG 5 cut(s) 982, 1199, 1953, 2633, 3245
SduI GDGCHC 3 cut(s) 1101, 1183, 2026
SexAI ACCWGGT 1 cut(s) 3243
SfcI CTRYAG 1 cut(s) 706
SfuI TTCGAA 2 cut(s) 804, 3222
SinI GGWCC 5 cut(s) 68, 1059, 1195, 2582, 2894
SmiMI CAYNNNNRTG 5 cut(s) 1276, 1660, 2474, 2487, 3328
SmlI CTYRAG 3 cut(s) 2507, 2681, 2924
SmoI CTYRAG 3 cut(s) 2507, 2681, 2924
SpeI ACTAGT 1 cut(s) 1811
SsiI CCGC 8 cut(s) 523, 660, 1626, 1881, 2128, 2414, 2454, 2898
SspI AATATT 2 cut(s) 1555, 2208
SspMI CTAG 8 cut(s) 437, 1229, 1482, 1812, 2307, 2438, 2664, 2762
StyD4I CCNGG 5 cut(s) 980, 1197, 1951, 2631, 3243
StyI CCWWGG 3 cut(s) 288, 2033, 2663
TaaI ACNGT 8 cut(s) 1429, 1459, 1949, 2111, 2489, 2521, 2774, 3073
TaiI ACGT 2 cut(s) 137, 2010
TaqI TCGA 9 cut(s) 109, 271, 343, 804, 1414, 1967, 2312, 2814, 3222
TaqII GACCGA 1 cut(s) 3288
TatI WGTACW 2 cut(s) 2097, 2106
TauI GCSGC 2 cut(s) 663, 1884
TfiI GAWTC 7 cut(s) 404, 515, 928, 1052, 1316, 1774, 3106
TscAI CASTG 7 cut(s) 1434, 1464, 1651, 1662, 2392, 2592, 3060
TseFI GTSAC 2 cut(s) 2416, 2465
TseI GCWGC 9 cut(s) 33, 431, 695, 1217, 1618, 1641, 2451, 2956, 3134
Tsp45I GTSAC 2 cut(s) 2416, 2465
TspGWI ACGGA 1 cut(s) 1810
TspRI CASTG 7 cut(s) 1434, 1464, 1651, 1662, 2392, 2592, 3060
Tth111I GACNNNGTC 1 cut(s) 3275
Van91I CCANNNNNTGG 1 cut(s) 1429
Vha464I CTTAAG 1 cut(s) 2924
VpaK11BI GGWCC 5 cut(s) 68, 1059, 1195, 2582, 2894
VspI ATTAAT 2 cut(s) 1724, 1889
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 2 cut(s) 692, 2909
XmaJI CCTAGG 1 cut(s) 2663
XmiI GTMKAC 2 cut(s) 1150, 2331
XmnI GAANNNNTTC 1 cut(s) 3009
XspI CTAG 8 cut(s) 437, 1229, 1482, 1812, 2307, 2438, 2664, 2762
ZraI GACGTC 1 cut(s) 2008
Zsp2I ATGCAT 3 cut(s) 1273, 1527, 2856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.