Rorug05G0466100

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000379
Physical Location & Seq
Forward (+)
64178443 .. 64180786
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0466100.1

Sequence Viewer

Length: 465 bp
ATGGATAGGCATTCGATGGGAGATCATCTTTGGGTGTCTTATATTCGTCGTTGTCAAATCCAGGATACCACAAGCTGCTCTATTACGTTATCATTCGAAGCGTGTTATTACAATAGCTACACGACTGTTCCATGCTCGGATTGTATGAAGAGGTGCGGGGCTCGATTGTTGTACGAGCAAGATTTGAAAAACCTCCTCAATGGGACAACCAACATCTTGAAGCGGAGTCGTGAATATTGTGACAAGGACGAGGCAGAGGCAATGCAATTGCAAGTGAGTTTTGATCAACTGGAAGGTTTCGGGTTCTTCACTTTTGGGAAGATGGAGTATTGTGGTGGAGATGTTCTCAGCTCCGCCCCCGATATGTTAGAAGCAGAAGTATGGGAAGATGGAGATTGTGGTGGAGCAGAATTCGAGGATGTAAGCCACGCTCCCAAAGGCTCTGTCAAGAAGTTTAGAATGTAA

Protein Analysis

154

Amino Acids

17.5

Weight (kDa)

4.76

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 156, 223, 354
AcsI RAATTY 1 cut(s) 410
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 2 cut(s) 187, 220
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 3 cut(s) 75, 117, 351
AluI AGCT 3 cut(s) 75, 117, 351
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 410
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AsuII TTCGAA 1 cut(s) 96
BanII GRGCYC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 10, 316, 383
BciT130I CCWGG 1 cut(s) 62
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 283
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BplI GAGNNNNNCTC 2 cut(s) 330, 362
Bpu14I TTCGAA 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 361
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 62
BslFI GGGAC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 22, 283
BspACI CCGC 3 cut(s) 156, 223, 354
BspCNI CTCAG 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 294
BssMI GATC 2 cut(s) 22, 283
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 25, 286
BstMBI GATC 2 cut(s) 22, 283
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 62
BsuI GTATCC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 424
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 132
CviJI RGCY 6 cut(s) 75, 117, 161, 351, 426, 441
CviKI_1 RGCY 6 cut(s) 75, 117, 161, 351, 426, 441
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 24, 285
DpnII GATC 2 cut(s) 22, 283
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 1 cut(s) 135
FaiI YATR 5 cut(s) 42, 133, 146, 365, 382
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 131
FauI CCCGC 1 cut(s) 149
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 135
HinfI GANTC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 217, 230, 448
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 265, 271
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 2 cut(s) 22, 283
LmnI GCTCC 3 cut(s) 356, 404, 436
LpnPI CCDG 3 cut(s) 47, 74, 275
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 24, 285
MboI GATC 2 cut(s) 22, 283
MboII GAAGA 4 cut(s) 160, 298, 331, 398
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 266, 410
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 6 cut(s) 144, 203, 206, 244, 250, 409
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 62
NdeII GATC 2 cut(s) 22, 283
NlaIII CATG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 96
PctI GAATGC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 22, 283
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 163
SetI ASST 7 cut(s) 77, 89, 119, 155, 195, 298, 353
SfuI TTCGAA 1 cut(s) 96
Sse9I AATT 2 cut(s) 266, 410
SsiI CCGC 3 cut(s) 156, 223, 354
SspI AATATT 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 89
TaqI TCGA 4 cut(s) 14, 96, 163, 414
TasI AATT 2 cut(s) 266, 410
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 161
XapI RAATTY 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.