Rorug07G0136300

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000379
Physical Location & Seq
Forward (+)
10681772 .. 10682743
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0136300.1

Sequence Viewer

Length: 972 bp
ATGGCTAATGAGAAGGGTCTGATCGTGAGTTTCGGGGAGATGCTGATCGACTTCGTCCCCACCGTTTCGGGCGTTTCACTGGCCGAAGCCCCAGCTTTCTTGAAGGCCCCCGGTGGCGCCCCCGCCAACGTGGCGATCGCTGTGGCTCGGCTCGGCGGCAACTCCTCCTTCGTCGGGAAGCTCGGCGACGACGAGTTCGGGCACATGCTTGCCGGAATCTTGAAAGAGAACGGTGTCTCCGGGCAGGGCATCCTGTTCGACCAAAACGCACGCACCGCTCTGGCTTTTGTCACCCTACGCGCTGATGGAGAACGAGAGTTCATGTTTTACCGGAACCCTAGCGCCGATATGCTGCTCAAGCCCGAAGAGCTCAATTTGGAGCTGATCAGATCCGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATCGTTGAGCCATGCAGGTCGGCACATCTGAAGGCAATGGAGGTCGCAAAAGATGCCGGTGCCTTACTTTCCTACGACCCGAACCTCCGACTACCATTGTGGCCTTCACCTGAGGAGGCCCGCGAACAAATAATGAGTATATGGGAAAAGGCAGAAGTGATTAAGGTCAGTGATGTGGAGCTTGAGTTTCTCACAGGAAATCCCAACATTGACGATGAATCTGCGATGACTCTGTGGCACCCTAACTTGAAGCTCCTCCTTGTCACTCTTGGTGAAAAGGGTTGCAGATACTACACTAAGAATTTCCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTTCTCGCAAAGATTGTTGATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCAAATTCGCAAATGCATGTGGAGCAATAACAACTACTCAGAAGGGAGCAATTCCTGCACTCCCCACAGAGTCCGAAGTCCTCGCCCTAATCAAAGAGGCATAA

Protein Analysis

323

Amino Acids

34.89

Weight (kDa)

4.89

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 7 - 312 1e-74 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccB1I GGYRCC 3 cut(s) 116, 485, 663
AccBSI CCGCTC 1 cut(s) 278
AccII CGCG 2 cut(s) 300, 549
AciI CCGC 6 cut(s) 123, 156, 276, 393, 547, 764
AclWI GGATC 2 cut(s) 384, 421
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 727, 872
AcuI CTGAAG 1 cut(s) 476
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 867
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 3 cut(s) 103, 223, 676
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 8 cut(s) 95, 181, 370, 382, 423, 607, 679, 749
AluI AGCT 8 cut(s) 95, 181, 370, 382, 423, 607, 679, 749
Alw21I GWGCWC 2 cut(s) 372, 805
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 2 cut(s) 384, 421
AoxI GGCC 4 cut(s) 81, 105, 527, 543
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 2 cut(s) 727, 872
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AsiSI GCGATCGC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 750
AspLEI GCGC 3 cut(s) 119, 302, 344
AspS9I GGNCC 2 cut(s) 106, 544
AsuC2I CCSGG 2 cut(s) 111, 241
AsuHPI GGTGA 4 cut(s) 283, 525, 710, 797
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 3 cut(s) 116, 485, 663
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 372, 805
BbvI GCAGC 1 cut(s) 339
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 4 cut(s) 238, 272, 629, 663
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 2 cut(s) 111, 241
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 339
BfoI RGCGCY 2 cut(s) 120, 345
BfuAI ACCTGC 1 cut(s) 432
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 2 cut(s) 157, 353
BlsI GCNGC 2 cut(s) 158, 354
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 2 cut(s) 111, 241
BmgT120I GGNCC 2 cut(s) 106, 544
BmiI GGNNCC 5 cut(s) 108, 118, 335, 487, 665
BmrFI CCNGG 2 cut(s) 111, 241
BmsI GCATC 3 cut(s) 30, 258, 469
BpuEI CTTGAG 2 cut(s) 341, 629
BpuMI CCSGG 2 cut(s) 111, 241
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 109, 733
BsaWI WCCGGW 1 cut(s) 330
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 84, 781
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 109, 733
BseGI GGATG 2 cut(s) 249, 743
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 2 cut(s) 528, 920
BseNI ACTGG 2 cut(s) 84, 781
BseRI GAGGAG 3 cut(s) 154, 554, 671
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 2 cut(s) 300, 549
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 4 cut(s) 83, 107, 529, 545
BshNI GGYRCC 3 cut(s) 116, 485, 663
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 372, 805
BsiSI CCGG 5 cut(s) 111, 213, 240, 331, 483
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 4 cut(s) 83, 107, 529, 545
Bsp1286I GDGCHC 3 cut(s) 204, 372, 805
Bsp143I GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
BspACI CCGC 6 cut(s) 123, 156, 276, 393, 547, 764
BspANI GGCC 4 cut(s) 83, 107, 529, 545
BspCNI CTCAG 2 cut(s) 529, 919
BspFNI CGCG 2 cut(s) 300, 549
BspLI GGNNCC 5 cut(s) 108, 118, 335, 487, 665
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 2 cut(s) 384, 421
BspQI GCTCTTC 2 cut(s) 360, 810
BspT107I GGYRCC 3 cut(s) 116, 485, 663
BsrBI CCGCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 2 cut(s) 84, 781
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 109, 733
BssMI GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
BssNI GRCGYC 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 64, 233
Bst6I CTCTTC 2 cut(s) 360, 810
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 2 cut(s) 479, 923
BstC8I GCNNGC 3 cut(s) 210, 271, 547
BstDEI CTNAG 3 cut(s) 537, 723, 906
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 2 cut(s) 249, 743
BstFNI CGCG 2 cut(s) 300, 549
BstH2I RGCGCY 2 cut(s) 120, 345
BstHHI GCGC 3 cut(s) 119, 302, 344
BstKTI GATC 7 cut(s) 24, 48, 138, 387, 392, 416, 429
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 8 cut(s) 131, 275, 358, 367, 479, 809, 890, 923
BstNSI RCATGY 2 cut(s) 208, 888
BstSCI CCNGG 2 cut(s) 109, 239
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 2 cut(s) 300, 549
BstV1I GCAGC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 4 cut(s) 83, 107, 529, 545
BtgI CCRYGG 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 665
BtsCI GGATG 2 cut(s) 249, 743
BtsIMutI CAGTG 2 cut(s) 77, 601
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 210, 271, 547
CfoI GCGC 3 cut(s) 119, 302, 344
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 106, 544
Csp6I GTAC 1 cut(s) 866
CviAII CATG 5 cut(s) 205, 322, 438, 755, 885
CviQI GTAC 1 cut(s) 866
DdeI CTNAG 3 cut(s) 537, 723, 906
DinI GGCGCC 1 cut(s) 118
DpnI GATC 7 cut(s) 23, 47, 137, 386, 391, 415, 428
DpnII GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 360, 810
EarI CTCTTC 2 cut(s) 360, 810
EciI GGCGGA 1 cut(s) 382
Ecl136II GAGCTC 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 476
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
FaeI CATG 5 cut(s) 208, 325, 441, 758, 888
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 204, 321, 437, 754, 884
FauI CCCGC 2 cut(s) 130, 554
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 157, 353
FokI GGATG 2 cut(s) 236, 750
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 157, 353
FspBI CTAG 1 cut(s) 339
GlaI GCGC 3 cut(s) 118, 301, 343
GluI GCNGC 2 cut(s) 157, 353
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 2 cut(s) 120, 345
HaeIII GGCC 4 cut(s) 83, 107, 529, 545
HapII CCGG 5 cut(s) 111, 213, 240, 331, 483
HhaI GCGC 3 cut(s) 119, 302, 344
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 5 cut(s) 208, 325, 441, 758, 888
Hin6I GCGC 3 cut(s) 117, 300, 342
HinP1I GCGC 3 cut(s) 117, 300, 342
HindIII AAGCTT 2 cut(s) 421, 747
HinfI GANTC 5 cut(s) 216, 644, 655, 788, 938
HpaII CCGG 5 cut(s) 111, 213, 240, 331, 483
HphI GGTGA 4 cut(s) 283, 525, 710, 797
Hpy188I TCNGA 6 cut(s) 21, 389, 456, 515, 909, 943
Hpy188III TCNNGA 5 cut(s) 25, 100, 175, 220, 839
Hpy99I CGWCG 3 cut(s) 176, 191, 194
HpyAV CCTTC 6 cut(s) 7, 97, 178, 451, 540, 904
HpyCH4III ACNGT 2 cut(s) 64, 233
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 4 cut(s) 441, 711, 884, 926
HpyF10VI GCNNNNNNNGC 8 cut(s) 131, 275, 358, 367, 479, 809, 890, 923
HpyF3I CTNAG 3 cut(s) 537, 723, 906
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 5 cut(s) 208, 325, 441, 758, 888
HspAI GCGC 3 cut(s) 117, 300, 342
KasI GGCGCC 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
LguI GCTCTTC 2 cut(s) 360, 810
LmnI GCTCC 5 cut(s) 379, 604, 684, 890, 914
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 3 cut(s) 30, 258, 469
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 289, 688, 757
MalI GATC 7 cut(s) 23, 47, 137, 386, 391, 415, 428
MbiI CCGCTC 1 cut(s) 278
MboI GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
MboII GAAGA 2 cut(s) 377, 797
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 3 cut(s) 204, 372, 805
MluCI AATT 4 cut(s) 373, 727, 872, 918
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 2 cut(s) 649, 947
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 9 cut(s) 175, 460, 521, 532, 535, 692, 852, 958, 959
Mph1103I ATGCAT 1 cut(s) 886
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 1 cut(s) 588
MspI CCGG 5 cut(s) 111, 213, 240, 331, 483
MspR9I CCNGG 2 cut(s) 111, 241
MvnI CGCG 2 cut(s) 300, 549
MwoI GCNNNNNNNGC 8 cut(s) 131, 275, 358, 367, 479, 809, 890, 923
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 2 cut(s) 111, 241
NdeII GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
NlaIII CATG 5 cut(s) 208, 325, 441, 758, 888
NlaIV GGNNCC 5 cut(s) 108, 118, 335, 487, 665
NmeAIII GCCGAG 3 cut(s) 127, 132, 162
NmuCI GTSAC 2 cut(s) 289, 688
NsiI ATGCAT 1 cut(s) 886
NspI RCATGY 2 cut(s) 208, 888
PciSI GCTCTTC 2 cut(s) 360, 810
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 189
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 216, 644, 788
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 158, 354
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 2 cut(s) 649, 946
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 2 cut(s) 649, 946
Psp124BI GAGCTC 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 5 cut(s) 108, 118, 335, 487, 665
PspPI GGNCC 2 cut(s) 106, 544
PsuI RGATCY 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 53
PvuI CGATCG 1 cut(s) 138
RgaI GCGATCGC 1 cut(s) 138
RsaI GTAC 1 cut(s) 867
RsaNI GTAC 1 cut(s) 866
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 2 cut(s) 360, 810
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 157, 353
Sau3AI GATC 7 cut(s) 21, 45, 135, 384, 389, 413, 426
Sau96I GGNCC 2 cut(s) 106, 544
ScaI AGTACT 1 cut(s) 867
SchI GAGTC 2 cut(s) 649, 947
ScrFI CCNGG 2 cut(s) 111, 241
SduI GDGCHC 3 cut(s) 204, 372, 805
SfaAI GCGATCGC 1 cut(s) 138
SfaNI GCATC 3 cut(s) 30, 258, 469
SfoI GGCGCC 1 cut(s) 118
SgfI GCGATCGC 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 356, 608
SmoI CTYRAG 2 cut(s) 356, 608
Sse9I AATT 4 cut(s) 373, 727, 872, 918
SsiI CCGC 6 cut(s) 123, 156, 276, 393, 547, 764
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 109, 239
TaaI ACNGT 2 cut(s) 64, 233
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 48, 258
TasI AATT 4 cut(s) 373, 727, 872, 918
TatI WGTACW 1 cut(s) 865
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 3 cut(s) 216, 644, 788
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 2 cut(s) 84, 601
TseFI GTSAC 2 cut(s) 289, 688
TseI GCWGC 1 cut(s) 352
Tsp45I GTSAC 2 cut(s) 289, 688
TspDTI ATGAA 4 cut(s) 310, 657, 743, 780
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 2 cut(s) 84, 601
Tth111I GACNNNGTC 1 cut(s) 53
XapI RAATTY 2 cut(s) 727, 872
XceI RCATGY 2 cut(s) 208, 888
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 867
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.