FvH4_3g43880

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000379
Physical Location & Seq
Reverse (-)
36582734 .. 36588583
5850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43880.t2

Sequence Viewer

Length: 3522 bp
ATGTGGGATCTCAATTGCTCTCCTGATCACAACGACGACGGTGCTGATACGCAACAGTTCTGCTTCCCAGTTCTTGAAATGGGACCCACGCCGGGAGCCGTGGCTGGCAGTGTTGCCGCTGAGCTGATTGCATCTTCCTCTTCTTCATCATCAGCTCGTTGCTGCAAGTACGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGGAGGGGAATTACTTCTCAATTATATGATCAGCTGCATAACAAGAGAAGAGTTGCAACATTCATGGATGATCGAGATCTTGAAGTAGGGGATGCTATATCTCCCACTCTGCTAAAAGCAATTGAAGAATCAAGGTTTGCAATTGTTGTCCTTTCTCCAAACTATGCCTCTTCTACTTGGTGTTTGGAGGAACTTGCGAAGATCTGTGAGTGCATGAAAGACCAGAAAAGAATTCTTCCACTTTTCTATAATGTCGAGCCTACTAATGTACGGTTCCAGAAGAGGAGTTTCGAAGAAGCTTTCAACGTGCATGAAAGCTCTGGGCGACACAGATCAGAGAAGGTGCAGCTGTGGAAGGATGCTTTGAGCAAAGTGACCAGTTTCTCTGGGTGGGATTCAAACAAGTACAAAACTGATACAGAACTTGTGGAGAAAATTGTGGATACTGTGTTCAAAAGAATACAACCTTTTGACGTTGAGTTTACAATGTCCACCGGAGATTTCGAAGCGTATGAAGAAACGAGAAAATCCATGGGTGAGGTTATGAAGGCGCTTATAGATGACAACGTCACTGCCATTGGGGTCTACGGAATGGGCGGAGTCGGCAAGACAACTCTGGTAAAACATGTGGCTGCTCAAACCTGCAAAAATGGGATTTTTCATCATGTGGTTATGGCTGTTGTATCCCAAAGCCCCAACATCGAAAGAATTCAACACACATTATTGGCGAAGCTACAGGGCCCTGACTTCCAGTTACAAGAAAGTGAAAGAGCCTCTAGATTGTATAAAGAGATAATGAGGAAAACCAATGTCCTCATAATCTTGGATGACGTTTGGGGGTTTATAGATTTGTTACAAATAGGAATTCCCAGCTATGACGAGCTCAAAAAACGCAATTCCAAAGTCTTACTCACCTCCAGGAGTCGGCATGTTTGTCATTCCATGGGAAGCAAGGAAAATATTTATCTCGATTTCTTATCGGAACCAGATTCTTGGAGCTTGTTTGTCAAGAAAACAAGAAGATCTTTTGATACCCCCGATTTTGATAGTGTAGCCAGGAAGGTAGCTAGAGAATGTAGGGGTCTACCGATTGCCCTGATAGCTGTTGCAAGGGCTCTTGGAGATAAAGATCTGGCGGAATGGCAAACAGCAGCTCAACAATTAAAGAAGTCGCGAAAGGCCAACCCTCACCATGATGACACAGCTTTCCAATGTTTGAAATTAAGCTATGATTCCTTGAAAAATAAGGACTACGAATCATGCTTCTTGTTGTGTTGCCTATTTCCAGAAGACTATGACATCTCAATAGAAGACTTGTTCAAGTATGCAATTGGGAAAGGATTGTTTCGAGACGACATAATACATGAAGCCAGAGCAATAGCAGATACAGTGGTCAAGCACCTGATAGATGCTAGCTTGCTTTTGGATGGTGAATATGATGGAGATGTAAGGATGCACGATGTCGTCCGGGATACAGCCATGAGAATTGCAAAATGTGAAGATGGACATGGGTTTTTGGTGAGCGCTGGATGTGGTCTTAAGGATTGGCCATGTCGATCACATGAAGACTACCATGCTATCTCACTAATGGCGAATAACCTTCGCAGTCTGCCCGATGAGTTGATATGTCCAAAACTTCAGATTTTATTACTACAAGCGAATCGGAATTTGTATGAGATCCCAGAGACCTTTTTCCAAAGTCAGAATGAATTAAAAGTCTTAGATCTTAGCCGCACCAACATTTCATTGCTGCCCCAATCATTCAGTCTCCTGACCAAGCTCCAAGCTCTGCATCTAGATTGTTGCCGCAAAGCAGTTGACATTTCCATAGTCGGAAAACTTAAGAAGCTTGAGATTCTTAGTATGAGACAATATCCTCTTACGGAGCTGTCTAGAGAAATAGGAAATTTGACCAATCTAAGGATGTTGGATATCGGTGGCTATTGTTTTACATGTCGAGGTATTGTCACAATTCCATCTGAAGTGATATCAAAGCTGCATAGATTAGAAGAATTGTACATGATGAACTGTGGATTTGTGAACTGGGAAAGTCCAATTGAGGGAGAAGGAGATGAAATCAATATTGGCTTTGGTGAGCTAGCTGGTTTATCAAAGTTGAAAATTTTGCAGGTTTCCTTACCTAATGCAAAATGCATCCCTAAAGATGTCGAGGTCGAACCGGATTGGATTTACTTTGATATACATATTGGGTGCCCATGCGAGGAAGATTATCAGTATGATCGTAAATCAAGATCCTTGCGTTTTGGTGACAGAACCATCAGTACCTTACCTGACTGGTTTATCAAAGCGGTGACAGAGAAAACAGAGAAGCTAGAGTATGACCGCTGCGAAGGGATGAGTGACATTGTTATGGAATATGACCAGATGAGGTTAGGTAAACTCAAGCATCTCAGAGTACGTGGGGGGGCTTTTGTGTTCTTGAAAGAGTTGATGAACACAAAAACAAGACGAGTTGAAACAAGACCCGTGTTTGAGAATTTGGAAGAGTTGCATCTGATAGAACTGATCCACCTGGAGGAGTTGTGTGTTGGTGAGCTACCACCTGGGTCTCTCTTCAATCTCAAGGTGTTTCATGTGTATTTTGGTAATTATTTGAAGAGTGTATCAGAATTTGTACGTAGACTACCAAATCTGGAGAAACTATATCTGAATGTGTTGGGGGAAATGGAATATGTGTTTGGATGTGAAGGGTGTGAGCCAGAACAATCAAAACTGAGCGAGATGCATTTGTTGTCTCTAGAAGCACTAAGAAGCATATGTAATGGTCCGGCTCCACGTGCAATGTTCCGGAGTCTTAAAACCTTGATCGTGTACGATTGCAAGCTGCTGCAAAGTCTGTTCGCATCTGATGTAGCTGAGTGTCTTGTTCAATTGGAAGACCTTTTTGTAGAGGGGTGTCCTTTGTTGGAAAGAGTAATGGAAGCAGTGAACAAAGATAAGACGGTTCTACCAAACCTGAAGAACTTGGTTTTGAAGAATCTTCCTATGTTGTATGGTCCAAGTGCTACTACTGTTGATATTGAGTGTCCTTCATTGGAACGATTGGTGGTGGTGGATTGCCCCCAGCTTCCATTTTCAACCTCTTCCGATCTCTTTGAAGACTTGGAAAGCCGGAACCAGTTTTCTTTTTCAACCTCCGCTTCTGACTACTTTGGCAGCAGGAACCCAGTCCAACTCAATGATCCACAACTGTACGAGTTTTTATGTCGCAGATGCGAGAATGTAACTCCTTCCTATGAGGAGATCTACGAGGTAATGAAGTCTGTGGATGGGGAGCATATGAAATGGTTCTGCTGA

Protein Analysis

1174

Amino Acids

133.55

Weight (kDa)

5.43

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 56 - 225 2.1e-47 TIR domain
TIR_2 PF13676 59 - 155 2.1e-15 TIR domain
NB-ARC PF00931 244 - 407 3.9e-31 NB-ARC domain
LRR_8 PF13855 612 - 668 1.4e-09 Leucine rich repeat
LRR_14 PF23598 624 - 746 5.5e-13 Leucine-rich repeat region
LRR_RPS2 PF23247 902 - 1041 6.6e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 981 - 1098 2.5e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 854, 2323
AccB1I GGYRCC 1 cut(s) 2415
AccI GTMKAC 3 cut(s) 789, 1288, 2845
AccII CGCG 1 cut(s) 1378
AccIII TCCGGA 1 cut(s) 3012
AciI CCGC 8 cut(s) 117, 801, 1340, 1936, 2011, 2513, 2548, 3363
AclWI GGATC 5 cut(s) 15, 1876, 2451, 2725, 3401
AcoI YGGCCR 1 cut(s) 1751
AcsI RAATTY 8 cut(s) 435, 912, 1068, 1870, 2110, 2325, 2701, 2834
AcuI CTGAAG 3 cut(s) 1826, 2205, 3203
AcvI CACGTG 1 cut(s) 3002
AfaI GTAC 9 cut(s) 170, 474, 611, 2222, 2488, 2622, 2841, 3038, 3419
AfeI AGCGCT 1 cut(s) 1729
AfiI CCNNNNNNNGG 6 cut(s) 92, 1128, 2124, 2264, 2425, 2740
AflII CTTAAG 2 cut(s) 1742, 2045
AflIII ACRYGT 2 cut(s) 829, 2156
AjnI CCWGG 4 cut(s) 1121, 1259, 2736, 2767
AjuI GAANNNNNNNTTGG 4 cut(s) 2271, 2303, 2886, 2918
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
Alw21I GWGCWC 1 cut(s) 1089
Alw26I GTCTC 6 cut(s) 1548, 1883, 1976, 2065, 2778, 2964
AlwI GGATC 5 cut(s) 15, 1876, 2451, 2725, 3401
Aor13HI TCCGGA 1 cut(s) 3012
Aor51HI AGCGCT 1 cut(s) 1729
AoxI GGCC 3 cut(s) 943, 1383, 1751
ApaI GGGCCC 1 cut(s) 947
ApoI RAATTY 8 cut(s) 435, 912, 1068, 1870, 2110, 2325, 2701, 2834
Asp700I GAANNNNTTC 3 cut(s) 217, 912, 3512
AspLEI GCGC 2 cut(s) 757, 1730
AspS9I GGNCC 6 cut(s) 83, 194, 943, 944, 2990, 3221
AsuC2I CCSGG 2 cut(s) 93, 1673
AsuHPI GGTGA 9 cut(s) 752, 1108, 1385, 1646, 1735, 2309, 2483, 2527, 2768
AsuII TTCGAA 2 cut(s) 495, 708
AsuNHI GCTAGC 2 cut(s) 1616, 2302
AvaII GGWCC 4 cut(s) 83, 194, 2990, 3221
BaeGI GKGCMC 2 cut(s) 947, 2420
BaeI ACNNNNGTAYC 2 cut(s) 1581, 1614
BalI TGGCCA 1 cut(s) 1753
BanI GGYRCC 1 cut(s) 2415
BanII GRGCYC 3 cut(s) 947, 1089, 1321
BbrPI CACGTG 1 cut(s) 3002
BbsI GAAGAC 5 cut(s) 1500, 1521, 1776, 3108, 3330
Bbv12I GWGCWC 1 cut(s) 1089
BccI CCATC 6 cut(s) 1625, 1637, 1700, 2188, 2489, 3488
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciT130I CCWGG 4 cut(s) 1123, 1261, 2738, 2769
BciVI GTATCC 3 cut(s) 640, 898, 1669
BclI TGATCA 2 cut(s) 25, 232
BcnI CCSGG 2 cut(s) 93, 1673
BcoDI GTCTC 6 cut(s) 1548, 1883, 1976, 2065, 2778, 2964
BfaI CTAG 8 cut(s) 981, 1272, 1617, 2000, 2097, 2303, 2537, 2963
BfmI CTRYAG 1 cut(s) 938
BfoI RGCGCY 2 cut(s) 758, 1731
BfrI CTTAAG 2 cut(s) 1742, 2045
BfuAI ACCTGC 2 cut(s) 854, 2323
BfuI GTATCC 3 cut(s) 640, 898, 1669
BglII AGATCT 6 cut(s) 280, 405, 1226, 1333, 1927, 3468
BlpI GCTNAGC 1 cut(s) 120
Bme1390I CCNGG 6 cut(s) 93, 1123, 1261, 1673, 2738, 2769
Bme18I GGWCC 4 cut(s) 83, 194, 2990, 3221
BmgT120I GGNCC 6 cut(s) 83, 194, 943, 944, 2990, 3221
BmrFI CCNGG 6 cut(s) 93, 1123, 1261, 1673, 2738, 2769
BmrI ACTGGG 3 cut(s) 62, 2257, 3386
BmtI GCTAGC 2 cut(s) 1620, 2306
BmuI ACTGGG 3 cut(s) 62, 2257, 3386
BpiI GAAGAC 5 cut(s) 1500, 1521, 1776, 3108, 3330
BpmI CTGGAG 3 cut(s) 1105, 2759, 2879
Bpu1102I GCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 2 cut(s) 495, 708
BpuEI CTTGAG 3 cut(s) 2075, 2591, 2771
BpuMI CCSGG 2 cut(s) 93, 1673
BsaAI YACGTR 3 cut(s) 2624, 2843, 3002
BsaBI GATNNNNATC 2 cut(s) 279, 1332
BsaI GGTCTC 2 cut(s) 1883, 2778
BsaJI CCNNGG 4 cut(s) 99, 735, 1146, 2768
BsaWI WCCGGW 3 cut(s) 698, 2383, 3012
BsaXI ACNNNNNCTCC 2 cut(s) 2732, 2762
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 1128, 2124, 2264, 2425, 2740
Bse1I ACTGG 7 cut(s) 68, 582, 955, 2252, 2504, 3343, 3392
Bse3DI GCAATG 2 cut(s) 1949, 3012
Bse8I GATNNNNATC 2 cut(s) 279, 1332
BseAI TCCGGA 1 cut(s) 3012
BseBI CCWGG 4 cut(s) 1123, 1261, 2738, 2769
BseDI CCNNGG 4 cut(s) 99, 735, 1146, 2768
BseJI GATNNNNATC 2 cut(s) 279, 1332
BseLI CCNNNNNNNGG 6 cut(s) 92, 1128, 2124, 2264, 2425, 2740
BseMI GCAATG 2 cut(s) 1949, 3012
BseMII CTCAG 4 cut(s) 111, 2629, 2930, 3072
BseNI ACTGG 7 cut(s) 68, 582, 955, 2252, 2504, 3343, 3392
BseRI GAGGAG 3 cut(s) 502, 2756, 3479
BseSI GKGCMC 2 cut(s) 947, 2420
BseYI CCCAGC 2 cut(s) 1073, 3288
BsgI GTGCAG 1 cut(s) 569
Bsh1236I CGCG 1 cut(s) 1378
BshFI GGCC 3 cut(s) 945, 1385, 1753
BshNI GGYRCC 1 cut(s) 2415
BsiHKAI GWGCWC 1 cut(s) 1089
BsiSI CCGG 7 cut(s) 92, 699, 1672, 2384, 2993, 3013, 3337
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 6 cut(s) 92, 1128, 2124, 2264, 2425, 2740
BsmAI GTCTC 6 cut(s) 1548, 1883, 1976, 2065, 2778, 2964
BsmBI CGTCTC 1 cut(s) 1548
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 3 cut(s) 945, 1385, 1753
Bso31I GGTCTC 2 cut(s) 1883, 2778
Bsp119I TTCGAA 2 cut(s) 495, 708
Bsp120I GGGCCC 1 cut(s) 943
Bsp1286I GDGCHC 4 cut(s) 947, 1089, 1321, 2420
Bsp13I TCCGGA 1 cut(s) 3012
Bsp1407I TGTACA 1 cut(s) 2220
Bsp1720I GCTNAGC 1 cut(s) 120
Bsp19I CCATGG 2 cut(s) 735, 1146
Bsp68I TCGCGA 1 cut(s) 1378
BspACI CCGC 8 cut(s) 117, 801, 1340, 1936, 2011, 2513, 2548, 3363
BspANI GGCC 3 cut(s) 945, 1385, 1753
BspCNI CTCAG 4 cut(s) 112, 2628, 2931, 3073
BspEI TCCGGA 1 cut(s) 3012
BspFNI CGCG 1 cut(s) 1378
BspMI ACCTGC 2 cut(s) 854, 2323
BspOI GCTAGC 2 cut(s) 1620, 2306
BspPI GGATC 5 cut(s) 15, 1876, 2451, 2725, 3401
BspT104I TTCGAA 2 cut(s) 495, 708
BspT107I GGYRCC 1 cut(s) 2415
BspTI CTTAAG 2 cut(s) 1742, 2045
BspTNI GGTCTC 2 cut(s) 1883, 2778
BsrDI GCAATG 2 cut(s) 1949, 3012
BsrGI TGTACA 1 cut(s) 2220
BsrI ACTGG 7 cut(s) 68, 582, 955, 2252, 2504, 3343, 3392
BssECI CCNNGG 4 cut(s) 99, 735, 1146, 2768
BssT1I CCWWGG 2 cut(s) 735, 1146
Bst2UI CCWGG 4 cut(s) 1123, 1261, 2738, 2769
Bst4CI ACNGT 9 cut(s) 41, 57, 477, 652, 1594, 2234, 3169, 3238, 3417
Bst6I CTCTTC 8 cut(s) 145, 247, 379, 479, 2703, 2783, 2816, 3313
BstAFI CTTAAG 2 cut(s) 1742, 2045
BstAUI TGTACA 1 cut(s) 2220
BstBAI YACGTR 3 cut(s) 2624, 2843, 3002
BstBI TTCGAA 2 cut(s) 495, 708
BstC8I GCNNGC 5 cut(s) 106, 1618, 1622, 2304, 3047
BstDEI CTNAG 9 cut(s) 120, 1924, 1931, 2063, 2123, 2615, 2939, 2972, 3081
BstDSI CCRYGG 3 cut(s) 99, 735, 1146
BstFNI CGCG 1 cut(s) 1378
BstH2I RGCGCY 2 cut(s) 758, 1731
BstHHI GCGC 2 cut(s) 757, 1730
BstMAI GTCTC 6 cut(s) 1548, 1883, 1976, 2065, 2778, 2964
BstMWI GCNNNNNNNGC 3 cut(s) 807, 1304, 3002
BstNI CCWGG 4 cut(s) 1123, 1261, 2738, 2769
BstNSI RCATGY 3 cut(s) 833, 1136, 2160
BstSCI CCNGG 6 cut(s) 91, 1121, 1259, 1671, 2736, 2767
BstSFI CTRYAG 1 cut(s) 938
BstSLI GKGCMC 2 cut(s) 947, 2420
BstSNI TACGTA 1 cut(s) 2843
BstUI CGCG 1 cut(s) 1378
BstV2I GAAGAC 5 cut(s) 1500, 1521, 1776, 3108, 3330
BstX2I RGATCY 9 cut(s) 7, 280, 405, 1226, 1333, 1881, 1927, 2456, 3468
BstXI CCANNNNNNTGG 1 cut(s) 1197
BstYI RGATCY 9 cut(s) 7, 280, 405, 1226, 1333, 1881, 1927, 2456, 3468
BsuI GTATCC 3 cut(s) 640, 898, 1669
BsuRI GGCC 3 cut(s) 945, 1385, 1753
BtgI CCRYGG 3 cut(s) 99, 735, 1146
BtsI GCAGTG 3 cut(s) 115, 774, 3156
BtsIMutI CAGTG 4 cut(s) 115, 774, 1599, 3156
BtuMI TCGCGA 1 cut(s) 1378
BveI ACCTGC 2 cut(s) 854, 2323
Cac8I GCNNGC 5 cut(s) 106, 1618, 1622, 2304, 3047
CfoI GCGC 2 cut(s) 757, 1730
Cfr13I GGNCC 6 cut(s) 83, 194, 943, 944, 2990, 3221
Csp6I GTAC 9 cut(s) 169, 473, 610, 2221, 2487, 2621, 2840, 3037, 3418
CviQI GTAC 9 cut(s) 169, 473, 610, 2221, 2487, 2621, 2840, 3037, 3418
DdeI CTNAG 9 cut(s) 120, 1924, 1931, 2063, 2123, 2615, 2939, 2972, 3081
EaeI YGGCCR 1 cut(s) 1751
Eam1104I CTCTTC 8 cut(s) 145, 247, 379, 479, 2703, 2783, 2816, 3313
EarI CTCTTC 8 cut(s) 145, 247, 379, 479, 2703, 2783, 2816, 3313
EciI GGCGGA 2 cut(s) 816, 1355
Ecl136II GAGCTC 1 cut(s) 1087
Eco105I TACGTA 1 cut(s) 2843
Eco130I CCWWGG 2 cut(s) 735, 1146
Eco24I GRGCYC 3 cut(s) 947, 1089, 1321
Eco31I GGTCTC 2 cut(s) 1883, 2778
Eco32I GATATC 2 cut(s) 2137, 2193
Eco47I GGWCC 4 cut(s) 83, 194, 2990, 3221
Eco47III AGCGCT 1 cut(s) 1729
Eco53kI GAGCTC 1 cut(s) 1087
Eco57I CTGAAG 3 cut(s) 1826, 2205, 3203
Eco72I CACGTG 1 cut(s) 3002
EcoICRI GAGCTC 1 cut(s) 1087
EcoO109I RGGNCCY 4 cut(s) 83, 194, 943, 944
EcoRI GAATTC 3 cut(s) 435, 912, 1068
EcoRII CCWGG 4 cut(s) 1121, 1259, 2736, 2767
EcoRV GATATC 2 cut(s) 2137, 2193
EcoT14I CCWWGG 2 cut(s) 735, 1146
EcoT22I ATGCAT 2 cut(s) 2360, 2952
EcoT38I GRGCYC 3 cut(s) 947, 1089, 1321
ErhI CCWWGG 2 cut(s) 735, 1146
Esp3I CGTCTC 1 cut(s) 1548
FalI AAGNNNNNCTT 2 cut(s) 1213, 1245
FaqI GGGAC 1 cut(s) 96
FauNDI CATATG 2 cut(s) 2981, 3504
FbaI TGATCA 2 cut(s) 25, 232
FblI GTMKAC 3 cut(s) 789, 1288, 2845
FriOI GRGCYC 3 cut(s) 947, 1089, 1321
FspBI CTAG 8 cut(s) 981, 1272, 1617, 2000, 2097, 2303, 2537, 2963
GlaI GCGC 2 cut(s) 756, 1729
GsaI CCCAGC 2 cut(s) 1077, 3292
GsuI CTGGAG 3 cut(s) 1105, 2759, 2879
HaeII RGCGCY 2 cut(s) 758, 1731
HaeIII GGCC 3 cut(s) 945, 1385, 1753
HapII CCGG 7 cut(s) 92, 699, 1672, 2384, 2993, 3013, 3337
HhaI GCGC 2 cut(s) 757, 1730
Hin6I GCGC 2 cut(s) 755, 1728
HinP1I GCGC 2 cut(s) 755, 1728
HincII GTYRAC 1 cut(s) 2023
HindII GTYRAC 1 cut(s) 2023
HindIII AAGCTT 2 cut(s) 501, 2051
HpaII CCGG 7 cut(s) 92, 699, 1672, 2384, 2993, 3013, 3337
HphI GGTGA 9 cut(s) 752, 1108, 1385, 1646, 1735, 2309, 2483, 2527, 2768
Hpy99I CGWCG 2 cut(s) 38, 41
HpyCH4III ACNGT 9 cut(s) 41, 57, 477, 652, 1594, 2234, 3169, 3238, 3417
HpyCH4IV ACGT 7 cut(s) 510, 678, 771, 1035, 2623, 2842, 3001
HpyF10VI GCNNNNNNNGC 3 cut(s) 807, 1304, 3002
HpyF3I CTNAG 9 cut(s) 120, 1924, 1931, 2063, 2123, 2615, 2939, 2972, 3081
HpySE526I ACGT 7 cut(s) 510, 678, 771, 1035, 2623, 2842, 3001
HspAI GCGC 2 cut(s) 755, 1728
KflI GGGWCCC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 3012
Ksp22I TGATCA 2 cut(s) 25, 232
LmnI GCTCC 6 cut(s) 95, 1200, 1989, 2089, 3001, 3499
MaeI CTAG 8 cut(s) 981, 1272, 1617, 2000, 2097, 2303, 2537, 2963
MaeII ACGT 7 cut(s) 510, 678, 771, 1035, 2623, 2842, 3001
MaeIII GTNAC 9 cut(s) 577, 772, 957, 1056, 2170, 2471, 2515, 2564, 3448
MfeI CAATTG 6 cut(s) 13, 324, 345, 1533, 2259, 3095
MflI RGATCY 9 cut(s) 7, 280, 405, 1226, 1333, 1881, 1927, 2456, 3468
MhlI GDGCHC 4 cut(s) 947, 1089, 1321, 2420
MlsI TGGCCA 1 cut(s) 1753
MluNI TGGCCA 1 cut(s) 1753
MlyI GAGTC 3 cut(s) 813, 1135, 3025
MmeI TCCRAC 4 cut(s) 2017, 2112, 3111, 3421
Mox20I TGGCCA 1 cut(s) 1753
Mph1103I ATGCAT 2 cut(s) 2360, 2952
MroI TCCGGA 1 cut(s) 3012
MroXI GAANNNNTTC 3 cut(s) 217, 912, 3512
MscI TGGCCA 1 cut(s) 1753
MseI TTAA 6 cut(s) 1367, 1427, 1743, 1916, 2046, 3021
MslI CAYNNNNRTG 2 cut(s) 1398, 2573
Msp20I TGGCCA 1 cut(s) 1753
MspA1I CMGCKG 4 cut(s) 119, 238, 553, 2550
MspCI CTTAAG 2 cut(s) 1742, 2045
MspI CCGG 7 cut(s) 92, 699, 1672, 2384, 2993, 3013, 3337
MspR9I CCNGG 6 cut(s) 93, 1123, 1261, 1673, 2738, 2769
MunI CAATTG 6 cut(s) 13, 324, 345, 1533, 2259, 3095
MvaI CCWGG 4 cut(s) 1123, 1261, 2738, 2769
MvnI CGCG 1 cut(s) 1378
MwoI GCNNNNNNNGC 3 cut(s) 807, 1304, 3002
NciI CCSGG 2 cut(s) 93, 1673
NcoI CCATGG 2 cut(s) 735, 1146
NdeI CATATG 2 cut(s) 2981, 3504
NheI GCTAGC 2 cut(s) 1616, 2302
NmuCI GTSAC 6 cut(s) 577, 772, 2170, 2471, 2515, 2564
NruI TCGCGA 1 cut(s) 1378
NsiI ATGCAT 2 cut(s) 2360, 2952
NspI RCATGY 3 cut(s) 833, 1136, 2160
NspV TTCGAA 2 cut(s) 495, 708
PciI ACATGT 2 cut(s) 829, 2156
PdmI GAANNNNTTC 3 cut(s) 217, 912, 3512
PfeI GAWTC 8 cut(s) 332, 599, 1193, 1436, 1460, 1864, 2059, 3202
PflFI GACNNNGTC 1 cut(s) 770
PfoI TCCNGGA 2 cut(s) 1121, 1671
PleI GAGTC 3 cut(s) 812, 1134, 3024
PmaCI CACGTG 1 cut(s) 3002
PmlI CACGTG 1 cut(s) 3002
PpsI GAGTC 3 cut(s) 812, 1134, 3024
Ppu21I YACGTR 3 cut(s) 2624, 2843, 3002
PpuMI RGGWCCY 2 cut(s) 83, 194
PscI ACATGT 2 cut(s) 829, 2156
Psp124BI GAGCTC 1 cut(s) 1089
Psp5II RGGWCCY 2 cut(s) 83, 194
Psp6I CCWGG 4 cut(s) 1121, 1259, 2736, 2767
PspCI CACGTG 1 cut(s) 3002
PspFI CCCAGC 2 cut(s) 1073, 3288
PspGI CCWGG 4 cut(s) 1121, 1259, 2736, 2767
PspOMI GGGCCC 1 cut(s) 943
PspPI GGNCC 6 cut(s) 83, 194, 943, 944, 2990, 3221
PspPPI RGGWCCY 2 cut(s) 83, 194
PsrI GAACNNNNNNTAC 2 cut(s) 2470, 2502
PsuI RGATCY 9 cut(s) 7, 280, 405, 1226, 1333, 1881, 1927, 2456, 3468
PsyI GACNNNGTC 1 cut(s) 770
PvuII CAGCTG 2 cut(s) 238, 553
RruI TCGCGA 1 cut(s) 1378
RsaI GTAC 9 cut(s) 170, 474, 611, 2222, 2488, 2622, 2841, 3038, 3419
RsaNI GTAC 9 cut(s) 169, 473, 610, 2221, 2487, 2621, 2840, 3037, 3418
RseI CAYNNNNRTG 2 cut(s) 1398, 2573
SacI GAGCTC 1 cut(s) 1089
SaqAI TTAA 6 cut(s) 1367, 1427, 1743, 1916, 2046, 3021
Sau96I GGNCC 6 cut(s) 83, 194, 943, 944, 2990, 3221
SchI GAGTC 3 cut(s) 813, 1135, 3025
ScrFI CCNGG 6 cut(s) 93, 1123, 1261, 1673, 2738, 2769
SduI GDGCHC 4 cut(s) 947, 1089, 1321, 2420
SfcI CTRYAG 1 cut(s) 938
SfuI TTCGAA 2 cut(s) 495, 708
SinI GGWCC 4 cut(s) 83, 194, 2990, 3221
SmiMI CAYNNNNRTG 2 cut(s) 1398, 2573
SmlI CTYRAG 5 cut(s) 1742, 2045, 2054, 2606, 2786
SmoI CTYRAG 5 cut(s) 1742, 2045, 2054, 2606, 2786
SnaBI TACGTA 1 cut(s) 2843
SsiI CCGC 8 cut(s) 117, 801, 1340, 1936, 2011, 2513, 2548, 3363
SspI AATATT 2 cut(s) 1165, 2287
SspMI CTAG 8 cut(s) 981, 1272, 1617, 2000, 2097, 2303, 2537, 2963
SstI GAGCTC 1 cut(s) 1089
StyD4I CCNGG 6 cut(s) 91, 1121, 1259, 1671, 2736, 2767
StyI CCWWGG 2 cut(s) 735, 1146
TaaI ACNGT 9 cut(s) 41, 57, 477, 652, 1594, 2234, 3169, 3238, 3417
TaiI ACGT 7 cut(s) 513, 681, 774, 1038, 2626, 2845, 3004
TatI WGTACW 2 cut(s) 609, 2220
TauI GCSGC 3 cut(s) 119, 1938, 2013
TfiI GAWTC 8 cut(s) 332, 599, 1193, 1436, 1460, 1864, 2059, 3202
Tru1I TTAA 6 cut(s) 1367, 1427, 1743, 1916, 2046, 3021
Tru9I TTAA 6 cut(s) 1367, 1427, 1743, 1916, 2046, 3021
TscAI CASTG 4 cut(s) 115, 781, 1599, 3156
TseFI GTSAC 6 cut(s) 577, 772, 2170, 2471, 2515, 2564
Tsp45I GTSAC 6 cut(s) 577, 772, 2170, 2471, 2515, 2564
TspGWI ACGGA 2 cut(s) 807, 2102
TspRI CASTG 4 cut(s) 115, 781, 1599, 3156
Tth111I GACNNNGTC 1 cut(s) 770
Vha464I CTTAAG 2 cut(s) 1742, 2045
VpaK11BI GGWCC 4 cut(s) 83, 194, 2990, 3221
XapI RAATTY 8 cut(s) 435, 912, 1068, 1870, 2110, 2325, 2701, 2834
XbaI TCTAGA 4 cut(s) 980, 1999, 2096, 2962
XceI RCATGY 3 cut(s) 833, 1136, 2160
XmiI GTMKAC 3 cut(s) 789, 1288, 2845
XmnI GAANNNNTTC 3 cut(s) 217, 912, 3512
XspI CTAG 8 cut(s) 981, 1272, 1617, 2000, 2097, 2303, 2537, 2963
Zsp2I ATGCAT 2 cut(s) 2360, 2952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.