Rorug07G0125700

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000379
Physical Location & Seq
Reverse (-)
9918894 .. 9923162
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0125700.1

Sequence Viewer

Length: 2430 bp
ATGGCGGATCCGAGCTCATCTGGCCCAAATCCTGACCCGAAAACTAAGAAGGATTTTTCCACTGCTATTTTGGAGCGAAAGAAGTCTCCTAATCGACTTGTGGTTGATGAAGCTATCAATGATGATAATTCTGTGGTGTCCTTGCACCCTGCTACCATGGAAAAACTTCAGTTTTTTCGGGGTGACACTGTGCTAATAAAGGGGAAGAAACGAAAAGACACAGTTTGCATTGTTCTTGCTGATGAACAATGTGAAGAACCGAAAATCAGAATGAACAAAGTTGTAAGGGCTAATCTTAGGGTTCGTCTTGGAGATGTTGTGTCGGTTCATACTTGCCCTGATGTCAAATATGGGAAGCGGGTTCACATCCTTCCAATCGATGATACAATTGAAGGCGTAACTGGAAACTTGTTTGATGCATATTTGAAGCCATACTTCTTGGAATCTTACCGGCCTGTGAGGAAGGGTGACCTTTTCCTGGTCAGGGGTGGGATGCGAAGTGTTGAGTTCAAGGTCATTGAGACAGACCCTGGTGAATACTGTGTTGTTGCTCCCGATACTGAGATTTTCTGTGAGGGAGAACCTGTGAAACGTGAGGATGAGGAAAAATTGAATGAGGTGGGCTATGATGATGTTGGAGGTGTTAGGAAGCAAATGGCTCAGATACGCGAGTTAGTAGAGTTACCTCTTAGACACCCACAGCTCTTCAAGTCCATTGGAGTGAAACCACCTAAAGGTATTCTGCTTTATGGACCACCTGGGTCTGGGAAAACTTTGATTGCAAGGGCTGTAGCTAATGAGACTGGAGCATTCTTCTTTTTGATTAATGGACCTGAAATAATGTCAAAGTTAGCTGGTGAGAGTGAAAGCAACTTGAGGAAGGCATTTGAAGAAGCTGAAAAGAATGCCCCATCAATCATTTTTATTGATGAGTTAGATTCCATTGCTCCAAAGAGGGAGAAGACTCATGGTGAAGTGGAAAGGCGTATAGTATCGCAACTTCTGACTTTGATGGATGGTCTCAAGTCCCGTGCACATGTTATTGTCATGGGAGCTACAAATAGGCCAAACAGCATTGACCCTGCTCTGAGGAGGTTTGGAAGATTTGATAGAGAGATTGACATAGGTGTACCGGATGAAGTTGGAAGATTGGAAGTTTTGAGAATCCATACAAAGAACATGAAACTTGCAGAAGATGTTGATCTCGAACGAGTTTCAAAGGATACCCATGGTTATGTCGGTGCTGATCTTGCCGCTCTCTGTACTGAGGCTGCTCTTCAGTGCATCCGTGAGAAAATGGATGTTATTGACTTGGAAGATGAGGAAATTGATGCTGAGGTGTTGAATTCTATGGCTGTGACGAATGAACACTTCCAGACTGCATTGGGTGCTTCAAATCCTTCAGCATTGCGTGAAACTGTTGTGGAGGTACCTAATGTCTCATGGGACGCTATTGGTGGATTGGACAATGTCAAAAGAGAACTTCAAGAGACTGTTCAATACCCAGTGGAGCATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCTAAAGGTGTTCTCTTTTATGGGCCACCTGGTTGTGGTAAAACCCTTCTTGCTAAGGCAATTGCCAATGAATGCCAGGCGAATTTCATTAGCATCAAAGGCCCCGAGTTACTGACAATGTGGTTTGGAGAAAGTGAGGCAAACGTCCGTGAGATATTTGACAAGGCTCGCCAATCTGCTCCTTGTGTTCTTTTCTTTGATGAGCTGGACTCGATTGCAACTCAGCGTGGAAATTCTTCTGGAGATGCTGGTGGTGCTGCAGATAGAGTCTTGAACCAACTTCTAACTGAAATGGATGGAATGAGTGCAAAGAAAACAGTTTTTATCATTGGAGCAACAAACAGGCCAGACATTATTGACCCAGCATTGCTCAGGCCTGGACGTCTTGACCAGCTCATCTATATCCCACTCCCAGATGAAGCTTCCCGTCATCAGATTTTCAAAGCATGTTTGCGGAAGTCACCCGTCTCTAAGGATGTTGACCTTGCAGTTCTTGCGCGTCATACCCATGGTTTTAGTGGTGCTGATATCACTGAGATATGTCAGCGTGCCTGCAAATATGCCATCAGAGAAAATATTGAGAAGGATATTGAGAAGGAGAGAAGAAGGGCAGAGAACCCAGAAGCGATGGAGGAGGATGACATTGATGAGGTTCCCGAGATAAAGGCAGCACACTTCGAGGAATCCATGAAATTTGCCCGCAGAAGTGTCAGTGATGCTGACATCAGGAAGTACCAGGCATTCGCTCAGACTCTGCAGCAATCTCGTGGGCTTGGATCCGACTTCCGGTTCCCCCAAACGGGCACCACTGCAGGAGGAGCAGCTCCAGACCCTTTTGCTTCGGCCCCAGCTGCTGCAGATGACGATGATCTGTACAGCTGA

Protein Analysis

809

Amino Acids

89.61

Weight (kDa)

5.22

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC48_N PF02359 32 - 113 1.2e-23 Cell division protein 48 (CDC48), N-terminal domain
CDC48_2 PF02933 133 - 197 1.2e-11 Cell division protein 48 (CDC48), domain 2
AAA PF00004 247 - 376 2.7e-47 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 399 - 442 1.2e-15 AAA+ lid domain
AAA PF00004 520 - 653 1.1e-47 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 675 - 715 1.4e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1933
Acc65I GGTACC 1 cut(s) 1429
AccB1I GGYRCC 2 cut(s) 1429, 2351
AccBSI CCGCTC 1 cut(s) 1256
AccII CGCG 2 cut(s) 669, 2047
AciI CCGC 5 cut(s) 5, 358, 1254, 2002, 2248
AclWI GGATC 4 cut(s) 2, 15, 2319, 2332
AcsI RAATTY 5 cut(s) 1345, 1532, 1630, 1780, 2240
AcuI CTGAAG 3 cut(s) 152, 1262, 1386
AcyI GRCGYC 1 cut(s) 1930
AfaI GTAC 5 cut(s) 1131, 1264, 1431, 2282, 2423
AfiI CCNNNNNNNGG 9 cut(s) 478, 484, 734, 764, 1553, 1583, 2334, 2347, 2348
AflIII ACRYGT 1 cut(s) 1036
AjnI CCWGG 7 cut(s) 477, 529, 757, 1576, 1623, 1924, 2283
Alw21I GWGCWC 2 cut(s) 17, 1036
Alw26I GTCTC 7 cut(s) 90, 515, 794, 1025, 1444, 1484, 2020
Alw44I GTGCAC 1 cut(s) 1032
AlwI GGATC 4 cut(s) 2, 15, 2319, 2332
AlwNI CAGNNNCTG 3 cut(s) 530, 2302, 2402
Ama87I CYCGRG 2 cut(s) 1652, 2204
AoxI GGCC 8 cut(s) 22, 452, 1064, 1571, 1648, 1892, 1922, 2391
ApaLI GTGCAC 1 cut(s) 1032
ApeKI GCWGC 7 cut(s) 1271, 1805, 2216, 2305, 2369, 2399, 2402
ApoI RAATTY 5 cut(s) 1345, 1532, 1630, 1780, 2240
AseI ATTAAT 1 cut(s) 825
Asp700I GAANNNNTTC 2 cut(s) 165, 1783
Asp718I GGTACC 1 cut(s) 1429
AspLEI GCGC 1 cut(s) 2047
AspS9I GGNCC 6 cut(s) 23, 752, 830, 1571, 1649, 2392
AsuHPI GGTGA 7 cut(s) 194, 479, 545, 869, 983, 1536, 2001
AvaI CYCGRG 2 cut(s) 1652, 2204
AvaII GGWCC 2 cut(s) 752, 830
BaeGI GKGCMC 2 cut(s) 1036, 2354
BaeI ACNNNNGTAYC 2 cut(s) 656, 689
BamHI GGATCC 2 cut(s) 7, 2324
BanI GGYRCC 2 cut(s) 1429, 2351
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 984, 1016
BauI CACGAG 1 cut(s) 2313
BbsI GAAGAC 1 cut(s) 968
Bbv12I GWGCWC 2 cut(s) 17, 1036
BbvCI CCTCAGC 1 cut(s) 1335
BbvI GCAGC 7 cut(s) 1258, 1792, 2228, 2317, 2381, 2386, 2389
BccI CCATC 6 cut(s) 919, 1006, 1010, 1838, 2120, 2170
BcgI CGANNNNNNTGC 2 cut(s) 2294, 2328
BciT130I CCWGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
BciVI GTATCC 1 cut(s) 1216
BcoDI GTCTC 7 cut(s) 90, 515, 794, 1025, 1444, 1484, 2020
BfmI CTRYAG 5 cut(s) 789, 1806, 2303, 2358, 2403
BfuI GTATCC 1 cut(s) 1216
BisI GCNGC 8 cut(s) 1254, 1272, 1806, 2217, 2306, 2370, 2400, 2403
BlsI GCNGC 8 cut(s) 1255, 1273, 1807, 2218, 2307, 2371, 2401, 2404
Bme1390I CCNGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
Bme18I GGWCC 2 cut(s) 752, 830
BmeT110I CYCGRG 2 cut(s) 1652, 2204
BmgT120I GGNCC 6 cut(s) 23, 752, 830, 1571, 1649, 2392
BmiI GGNNCC 8 cut(s) 9, 1431, 1651, 2202, 2326, 2339, 2353, 2394
BmrFI CCNGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
BmrI ACTGGG 1 cut(s) 1499
BmsI GCATC 8 cut(s) 406, 483, 1293, 1321, 1522, 1650, 1783, 2254
BmuI ACTGGG 1 cut(s) 1499
BpiI GAAGAC 1 cut(s) 968
BplI GAGNNNNNCTC 2 cut(s) 1742, 1774
BpmI CTGGAG 3 cut(s) 825, 1809, 2358
Bpu10I CCTNAGC 3 cut(s) 1335, 1602, 1919
BpuEI CTTGAG 2 cut(s) 895, 1007
Bsa29I ATCGAT 1 cut(s) 378
BsaBI GATNNNNATC 1 cut(s) 1200
BsaHI GRCGYC 1 cut(s) 1930
BsaI GGTCTC 1 cut(s) 1025
BsaJI CCNNGG 5 cut(s) 156, 529, 758, 1228, 2056
BsaWI WCCGGW 2 cut(s) 1132, 2334
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 570, 600
Bsc4I CCNNNNNNNGG 9 cut(s) 478, 484, 734, 764, 1553, 1583, 2334, 2347, 2348
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 3 cut(s) 406, 808, 1505
Bse3DI GCAATG 3 cut(s) 942, 1406, 1913
Bse8I GATNNNNATC 1 cut(s) 1200
BseBI CCWGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 5 cut(s) 156, 529, 758, 1228, 2056
BseJI GATNNNNATC 1 cut(s) 1200
BseLI CCNNNNNNNGG 9 cut(s) 478, 484, 734, 764, 1553, 1583, 2334, 2347, 2348
BseMI GCAATG 3 cut(s) 942, 1406, 1913
BseNI ACTGG 3 cut(s) 406, 808, 1505
BseRI GAGGAG 3 cut(s) 1105, 2195, 2379
BseSI GKGCMC 2 cut(s) 1036, 2354
BseXI GCAGC 7 cut(s) 1258, 1792, 2228, 2317, 2381, 2386, 2389
BseYI CCCAGC 2 cut(s) 1909, 2395
Bsh1236I CGCG 2 cut(s) 669, 2047
BshFI GGCC 8 cut(s) 24, 454, 1066, 1573, 1650, 1894, 1924, 2393
BshNI GGYRCC 2 cut(s) 1429, 2351
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 17, 1036
BsiHKCI CYCGRG 2 cut(s) 1652, 2204
BsiSI CCGG 3 cut(s) 451, 1133, 2335
BslFI GGGAC 2 cut(s) 1012, 1460
BslI CCNNNNNNNGG 9 cut(s) 478, 484, 734, 764, 1553, 1583, 2334, 2347, 2348
BsmAI GTCTC 7 cut(s) 90, 515, 794, 1025, 1444, 1484, 2020
BsmBI CGTCTC 1 cut(s) 2020
BsmFI GGGAC 2 cut(s) 1012, 1460
BsmI GAATGC 4 cut(s) 809, 910, 1625, 2288
BsnI GGCC 8 cut(s) 24, 454, 1066, 1573, 1650, 1894, 1924, 2393
Bso31I GGTCTC 1 cut(s) 1025
BsoBI CYCGRG 2 cut(s) 1652, 2204
Bsp1286I GDGCHC 3 cut(s) 17, 1036, 2354
Bsp1407I TGTACA 1 cut(s) 2421
Bsp143I GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
Bsp19I CCATGG 3 cut(s) 156, 1228, 2056
BspACI CCGC 5 cut(s) 5, 358, 1254, 2002, 2248
BspANI GGCC 8 cut(s) 24, 454, 1066, 1573, 1650, 1894, 1924, 2393
BspDI ATCGAT 1 cut(s) 378
BspFNI CGCG 2 cut(s) 669, 2047
BspLI GGNNCC 8 cut(s) 9, 1431, 1651, 2202, 2326, 2339, 2353, 2394
BspMAI CTGCAG 4 cut(s) 1810, 2307, 2362, 2407
BspPI GGATC 4 cut(s) 2, 15, 2319, 2332
BspQI GCTCTTC 2 cut(s) 710, 1281
BspT107I GGYRCC 2 cut(s) 1429, 2351
BspTNI GGTCTC 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 1256
BsrDI GCAATG 3 cut(s) 942, 1406, 1913
BsrFI RCCGGY 1 cut(s) 450
BsrGI TGTACA 1 cut(s) 2421
BsrI ACTGG 3 cut(s) 406, 808, 1505
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 5 cut(s) 156, 529, 758, 1228, 2056
BssMI GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
BssNI GRCGYC 1 cut(s) 1930
BssSI CACGAG 1 cut(s) 2313
BssT1I CCWWGG 3 cut(s) 156, 1228, 2056
Bst2BI CACGAG 1 cut(s) 2313
Bst2UI CCWGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
Bst4CI ACNGT 6 cut(s) 190, 223, 542, 1420, 1495, 1867
Bst6I CTCTTC 2 cut(s) 710, 1281
BstACI GRCGYC 1 cut(s) 1930
BstAPI GCANNNNNTGC 2 cut(s) 1388, 2042
BstAUI TGTACA 1 cut(s) 2421
BstC8I GCNNGC 4 cut(s) 1717, 2097, 2101, 2248
BstDSI CCRYGG 3 cut(s) 156, 1228, 2056
BstEII GGTNACC 1 cut(s) 467
BstENI CCTNNNNNAGG 1 cut(s) 1551
BstFNI CGCG 2 cut(s) 669, 2047
BstHHI GCGC 1 cut(s) 2047
BstKTI GATC 5 cut(s) 10, 1204, 1249, 2327, 2419
BstMAI GTCTC 7 cut(s) 90, 515, 794, 1025, 1444, 1484, 2020
BstMBI GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
BstMWI GCNNNNNNNGC 8 cut(s) 21, 1250, 1388, 1647, 1802, 2042, 2366, 2399
BstNI CCWGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
BstNSI RCATGY 3 cut(s) 1040, 1543, 1998
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 7 cut(s) 477, 529, 757, 1576, 1623, 1924, 2283
BstSFI CTRYAG 5 cut(s) 789, 1806, 2303, 2358, 2403
BstSLI GKGCMC 2 cut(s) 1036, 2354
BstUI CGCG 2 cut(s) 669, 2047
BstV1I GCAGC 7 cut(s) 1258, 1792, 2228, 2317, 2381, 2386, 2389
BstV2I GAAGAC 1 cut(s) 968
BstX2I RGATCY 2 cut(s) 7, 2324
BstYI RGATCY 2 cut(s) 7, 2324
Bsu15I ATCGAT 1 cut(s) 378
BsuI GTATCC 1 cut(s) 1216
BsuRI GGCC 8 cut(s) 24, 454, 1066, 1573, 1650, 1894, 1924, 2393
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 3 cut(s) 156, 1228, 2056
BtgZI GCGATG 1 cut(s) 2189
BtsI GCAGTG 2 cut(s) 60, 2355
BtsIMutI CAGTG 7 cut(s) 60, 186, 1286, 1512, 2079, 2266, 2355
Cac8I GCNNGC 4 cut(s) 1717, 2097, 2101, 2248
CaiI CAGNNNCTG 3 cut(s) 530, 2302, 2402
CfoI GCGC 1 cut(s) 2047
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 6 cut(s) 23, 752, 830, 1571, 1649, 2392
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 2 cut(s) 1457, 2036
CsiI ACCWGGT 1 cut(s) 1576
Csp6I GTAC 5 cut(s) 1130, 1263, 1430, 2281, 2422
CviQI GTAC 5 cut(s) 1130, 1263, 1430, 2281, 2422
DpnI GATC 5 cut(s) 9, 1203, 1248, 2326, 2418
DpnII GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
Eam1104I CTCTTC 2 cut(s) 710, 1281
EarI CTCTTC 2 cut(s) 710, 1281
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 3 cut(s) 156, 1228, 2056
Eco147I AGGCCT 1 cut(s) 1924
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 1025
Eco32I GATATC 1 cut(s) 2077
Eco47I GGWCC 2 cut(s) 752, 830
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 3 cut(s) 152, 1262, 1386
Eco88I CYCGRG 2 cut(s) 1652, 2204
Eco91I GGTNACC 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 1551
EcoO109I RGGNCCY 1 cut(s) 1649
EcoO65I GGTNACC 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 1345
EcoRII CCWGG 7 cut(s) 477, 529, 757, 1576, 1623, 1924, 2283
EcoRV GATATC 1 cut(s) 2077
EcoT14I CCWWGG 3 cut(s) 156, 1228, 2056
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 3 cut(s) 156, 1228, 2056
Esp3I CGTCTC 1 cut(s) 2020
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 2 cut(s) 1012, 1460
FauI CCCGC 2 cut(s) 351, 2255
Fnu4HI GCNGC 8 cut(s) 1254, 1272, 1806, 2217, 2306, 2370, 2400, 2403
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 8 cut(s) 1254, 1272, 1806, 2217, 2306, 2370, 2400, 2403
GlaI GCGC 1 cut(s) 2046
GluI GCNGC 8 cut(s) 1254, 1272, 1806, 2217, 2306, 2370, 2400, 2403
GsaI CCCAGC 2 cut(s) 1913, 2399
GsuI CTGGAG 3 cut(s) 825, 1809, 2358
HaeIII GGCC 8 cut(s) 24, 454, 1066, 1573, 1650, 1894, 1924, 2393
HapII CCGG 3 cut(s) 451, 1133, 2335
HgaI GACGC 2 cut(s) 1457, 2036
HhaI GCGC 1 cut(s) 2047
Hin1I GRCGYC 1 cut(s) 1930
Hin6I GCGC 1 cut(s) 2045
HinP1I GCGC 1 cut(s) 2045
HincII GTYRAC 1 cut(s) 2029
HindII GTYRAC 1 cut(s) 2029
HindIII AAGCTT 1 cut(s) 1968
HinfI GANTC 8 cut(s) 443, 938, 964, 1164, 1757, 1815, 2231, 2299
HpaII CCGG 3 cut(s) 451, 1133, 2335
HphI GGTGA 7 cut(s) 194, 479, 545, 869, 983, 1536, 2001
Hpy166II GTNNAC 4 cut(s) 364, 1034, 1130, 2029
Hpy188I TCNGA 9 cut(s) 12, 269, 663, 1005, 1089, 1983, 2117, 2298, 2329
Hpy8I GTNNAC 4 cut(s) 364, 1034, 1130, 2029
HpyCH4III ACNGT 6 cut(s) 190, 223, 542, 1420, 1495, 1867
HpyCH4IV ACGT 3 cut(s) 592, 1692, 1930
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 1250, 1388, 1647, 1802, 2042, 2366, 2399
HpySE526I ACGT 3 cut(s) 592, 1692, 1930
Hsp92I GRCGYC 1 cut(s) 1930
HspAI GCGC 1 cut(s) 2045
KpnI GGTACC 1 cut(s) 1433
Kzo9I GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
LguI GCTCTTC 2 cut(s) 710, 1281
Lsp1109I GCAGC 7 cut(s) 1258, 1792, 2228, 2317, 2381, 2386, 2389
LweI GCATC 8 cut(s) 406, 483, 1293, 1321, 1522, 1650, 1783, 2254
MabI ACCWGGT 1 cut(s) 1576
MaeII ACGT 3 cut(s) 592, 1692, 1930
MaeIII GTNAC 8 cut(s) 182, 397, 467, 681, 1357, 1542, 1656, 2007
MalI GATC 5 cut(s) 9, 1203, 1248, 2326, 2418
MbiI CCGCTC 1 cut(s) 1256
MboI GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
MfeI CAATTG 2 cut(s) 387, 1608
MflI RGATCY 2 cut(s) 7, 2324
MhlI GDGCHC 3 cut(s) 17, 1036, 2354
MlyI GAGTC 4 cut(s) 958, 1751, 1824, 2293
MmeI TCCRAC 3 cut(s) 616, 1123, 2352
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 2 cut(s) 165, 1783
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 3 cut(s) 719, 1233, 2055
MspA1I CMGCKG 2 cut(s) 2399, 2427
MspI CCGG 3 cut(s) 451, 1133, 2335
MspR9I CCNGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
MunI CAATTG 2 cut(s) 387, 1608
Mva1269I GAATGC 4 cut(s) 809, 910, 1625, 2288
MvaI CCWGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
MvnI CGCG 2 cut(s) 669, 2047
MwoI GCNNNNNNNGC 8 cut(s) 21, 1250, 1388, 1647, 1802, 2042, 2366, 2399
NcoI CCATGG 3 cut(s) 156, 1228, 2056
NdeII GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
NlaIV GGNNCC 8 cut(s) 9, 1431, 1651, 2202, 2326, 2339, 2353, 2394
NmuCI GTSAC 5 cut(s) 182, 467, 1357, 1542, 2007
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 3 cut(s) 1040, 1543, 1998
PceI AGGCCT 1 cut(s) 1924
PciI ACATGT 1 cut(s) 1036
PciSI GCTCTTC 2 cut(s) 710, 1281
PctI GAATGC 4 cut(s) 809, 910, 1625, 2288
PdmI GAANNNNTTC 2 cut(s) 165, 1783
PfeI GAWTC 4 cut(s) 443, 938, 1164, 2231
PflFI GACNNNGTC 1 cut(s) 1469
PkrI GCNGC 8 cut(s) 1255, 1273, 1807, 2218, 2307, 2371, 2401, 2404
PleI GAGTC 4 cut(s) 958, 1751, 1823, 2293
PpsI GAGTC 4 cut(s) 958, 1751, 1823, 2293
PscI ACATGT 1 cut(s) 1036
PshBI ATTAAT 1 cut(s) 825
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 7 cut(s) 477, 529, 757, 1576, 1623, 1924, 2283
PspEI GGTNACC 1 cut(s) 467
PspFI CCCAGC 2 cut(s) 1909, 2395
PspGI CCWGG 7 cut(s) 477, 529, 757, 1576, 1623, 1924, 2283
PspN4I GGNNCC 8 cut(s) 9, 1431, 1651, 2202, 2326, 2339, 2353, 2394
PspPI GGNCC 6 cut(s) 23, 752, 830, 1571, 1649, 2392
PstI CTGCAG 4 cut(s) 1810, 2307, 2362, 2407
PstNI CAGNNNCTG 3 cut(s) 530, 2302, 2402
PsuI RGATCY 2 cut(s) 7, 2324
PsyI GACNNNGTC 1 cut(s) 1469
PvuII CAGCTG 2 cut(s) 2399, 2427
RsaI GTAC 5 cut(s) 1131, 1264, 1431, 2282, 2423
RsaNI GTAC 5 cut(s) 1130, 1263, 1430, 2281, 2422
RseI CAYNNNNRTG 3 cut(s) 719, 1233, 2055
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 2 cut(s) 710, 1281
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 8 cut(s) 1254, 1272, 1806, 2217, 2306, 2370, 2400, 2403
Sau3AI GATC 5 cut(s) 7, 1201, 1246, 2324, 2416
Sau96I GGNCC 6 cut(s) 23, 752, 830, 1571, 1649, 2392
SchI GAGTC 4 cut(s) 958, 1751, 1824, 2293
ScrFI CCNGG 7 cut(s) 479, 531, 759, 1578, 1625, 1926, 2285
SduI GDGCHC 3 cut(s) 17, 1036, 2354
SexAI ACCWGGT 1 cut(s) 1576
SfaNI GCATC 8 cut(s) 406, 483, 1293, 1321, 1522, 1650, 1783, 2254
SfcI CTRYAG 5 cut(s) 789, 1806, 2303, 2358, 2403
SinI GGWCC 2 cut(s) 752, 830
SmiMI CAYNNNNRTG 3 cut(s) 719, 1233, 2055
SmlI CTYRAG 2 cut(s) 874, 1022
SmoI CTYRAG 2 cut(s) 874, 1022
SseBI AGGCCT 1 cut(s) 1924
SsiI CCGC 5 cut(s) 5, 358, 1254, 2002, 2248
SspI AATATT 1 cut(s) 2125
SstI GAGCTC 1 cut(s) 17
StuI AGGCCT 1 cut(s) 1924
StyD4I CCNGG 7 cut(s) 477, 529, 757, 1576, 1623, 1924, 2283
StyI CCWWGG 3 cut(s) 156, 1228, 2056
TaaI ACNGT 6 cut(s) 190, 223, 542, 1420, 1495, 1867
TaiI ACGT 3 cut(s) 595, 1695, 1933
TaqI TCGA 5 cut(s) 94, 378, 1206, 1760, 2226
TatI WGTACW 2 cut(s) 1262, 2421
TauI GCSGC 1 cut(s) 1256
TfiI GAWTC 4 cut(s) 443, 938, 1164, 2231
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 7 cut(s) 67, 193, 1286, 1512, 2086, 2266, 2362
TseFI GTSAC 5 cut(s) 182, 467, 1357, 1542, 2007
TseI GCWGC 7 cut(s) 1271, 1805, 2216, 2305, 2369, 2399, 2402
Tsp45I GTSAC 5 cut(s) 182, 467, 1357, 1542, 2007
TspGWI ACGGA 2 cut(s) 1277, 1685
TspRI CASTG 7 cut(s) 67, 193, 1286, 1512, 2086, 2266, 2362
Tth111I GACNNNGTC 1 cut(s) 1469
VneI GTGCAC 1 cut(s) 1032
VpaK11BI GGWCC 2 cut(s) 752, 830
VspI ATTAAT 1 cut(s) 825
XagI CCTNNNNNAGG 1 cut(s) 1551
XapI RAATTY 5 cut(s) 1345, 1532, 1630, 1780, 2240
XceI RCATGY 3 cut(s) 1040, 1543, 1998
XcmI CCANNNNNNNNNTGG 2 cut(s) 67, 2063
XmnI GAANNNNTTC 2 cut(s) 165, 1783
ZraI GACGTC 1 cut(s) 1931
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.