Rw0G022760

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01056
OG0000379
Physical Location & Seq
Forward (+)
13196 .. 14662
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022760.1

Sequence Viewer

Length: 1134 bp
ATGTTCGCCGGAGATTTTCAAGCATTTGAAGCAACAAGAAAAAGCATGAATGAGGTTATGAAGGCGCTTCAAGATGACGAGGTCACTGCCCTTGGGGTCTATGGAATGGGAGGGGTCGGCAAGACAACCATGGTTAAACGTGTCGGTGCGCTAGCCCGCAAGAATGGAATTTTTAACCATGTACTTCTGGCTGTCATATCCCAAAGCCCTGACTCGAGAAATATTCAAGCCACATTGGCAGAGCTGCTGGGCTTCAAATTCAAGTGGGAGACAGAAATTGGAAGAGCCGCTGAGTTGCATGAGAAGATAATGAGTAAAAATAAGATCCTTATAATCCTGGACGACATGTGGGAGAGAATGGATTTGTCAAGAATAGGAATTCCCAGCTATGACGAGCTCAAAAAATACAATTCTAAAGTCCTACTCACCACGAGGAGATTGCATGTTTGTAATTCCATGGACAGCCAAGCAAGCATTCCTCTCGATATCTTATCAGAAGAAGATTCTTGGAAATTGTTTATGAGAAATGCAGGAAGGTCTTTTGAATCCTCCAATTTTAATAACGTAGCAAGAAAGGTAGCTGCAGAATGTAGGGCAGTTGCAAGGGCACTCAGAGATAAAGATCTGGCGGAATGGCAAAAAGCAGCTCAACGACTGGAGAAGTCGCAAATTGCCAACCCTGATGATAAGGGAGATGCATTCGAATGTATAAAATTAAGCTTTGATTACTTGAAAGATGAGGACCACAAGTCATGCTTCTTGCTCTGTTGCCTATTCCCAGAAGACCATGAAATCAATATAGAAGACTTGTTCAGGTATGCGATTGGAAAAGGATTGTTTCAAGATGCCGAAACAATGTACGAAGCCAGAGGAACAGCAGATTCAGTGGTCAAGTACCTGAAAGATTCTAGCTTGCTTTTGGAGAGTGAATACATTGGATGTGTAAAGATGCATGATGTCATCCGGGATACAGCCATGAATATTGCAAAATCTAAAGATGGGCATCGGTTTACGGTAAAAGTTGGCTGTGGTTTAGAGGATTGGCGGCCACGCGGATTACATGAAGGCTGCACTGCTATTTCACTAATGAGGAACAAAATTCGCAAGCTACCCGAAGAAGAGTTGTTCCGCTGA

Protein Analysis

377

Amino Acids

42.83

Weight (kDa)

6.49

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 14 - 178 1.4e-29 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
AccII CGCG 1 cut(s) 1053
AciI CCGC 6 cut(s) 157, 288, 629, 1045, 1053, 1129
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 1046
AcsI RAATTY 4 cut(s) 168, 257, 378, 1098
AfaI GTAC 3 cut(s) 183, 860, 896
AflIII ACRYGT 2 cut(s) 139, 345
AgsI TTSAA 9 cut(s) 20, 29, 71, 227, 256, 262, 545, 733, 842
AhdI GACNNNNNGTC 1 cut(s) 748
AjnI CCWGG 1 cut(s) 336
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AluBI AGCT 8 cut(s) 244, 387, 397, 581, 647, 720, 912, 1108
AluI AGCT 8 cut(s) 244, 387, 397, 581, 647, 720, 912, 1108
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 1 cut(s) 1046
ApeKI GCWGC 4 cut(s) 244, 581, 644, 1068
ApoI RAATTY 4 cut(s) 168, 257, 378, 1098
AspLEI GCGC 2 cut(s) 67, 151
AspS9I GGNCC 1 cut(s) 742
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 702
AsuNHI GCTAGC 1 cut(s) 151
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 789, 810
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 4 cut(s) 231, 568, 656, 1055
BccI CCATC 1 cut(s) 992
BcgI CGANNNNNNTGC 6 cut(s) 68, 102, 421, 455, 463, 497
BciT130I CCWGG 1 cut(s) 338
BciVI GTATCC 1 cut(s) 961
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 2 cut(s) 152, 909
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 68
BfuI GTATCC 1 cut(s) 961
BglI GCCNNNNNGGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 622
BisI GCNGC 6 cut(s) 245, 288, 582, 645, 1046, 1069
BlsI GCNGC 6 cut(s) 246, 289, 583, 646, 1047, 1070
Bme1390I CCNGG 2 cut(s) 338, 965
Bme18I GGWCC 1 cut(s) 742
BmeRI GACNNNNNGTC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 742
BmrFI CCNGG 2 cut(s) 338, 965
BmsI GCATC 4 cut(s) 685, 835, 939, 1012
BmtI GCTAGC 1 cut(s) 155
BpiI GAAGAC 2 cut(s) 789, 810
BpmI CTGGAG 1 cut(s) 677
Bpu14I TTCGAA 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 965
BsaBI GATNNNNATC 2 cut(s) 621, 1002
BsaJI CCNNGG 3 cut(s) 91, 129, 456
Bse1I ACTGG 1 cut(s) 660
Bse8I GATNNNNATC 2 cut(s) 621, 1002
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 3 cut(s) 91, 129, 456
BseGI GGATG 2 cut(s) 944, 960
BseJI GATNNNNATC 2 cut(s) 621, 1002
BseMII CTCAG 2 cut(s) 282, 625
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 1 cut(s) 448
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 4 cut(s) 231, 568, 656, 1055
BseYI CCCAGC 2 cut(s) 247, 383
BsgI GTGCAG 1 cut(s) 1054
Bsh1236I CGCG 1 cut(s) 1053
BshFI GGCC 1 cut(s) 1048
BsiHKAI GWGCWC 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 2 cut(s) 9, 964
BsmAI GTCTC 1 cut(s) 263
BsmI GAATGC 2 cut(s) 474, 698
BsnI GGCC 1 cut(s) 1048
BsoBI CYCGRG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 702
Bsp1286I GDGCHC 2 cut(s) 399, 610
Bsp143I GATC 2 cut(s) 324, 622
Bsp19I CCATGG 2 cut(s) 129, 456
BspACI CCGC 6 cut(s) 157, 288, 629, 1045, 1053, 1129
BspANI GGCC 1 cut(s) 1048
BspCNI CTCAG 2 cut(s) 283, 624
BspFNI CGCG 1 cut(s) 1053
BspMAI CTGCAG 1 cut(s) 586
BspOI GCTAGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 277
BspT104I TTCGAA 1 cut(s) 702
BsrI ACTGG 1 cut(s) 660
BssECI CCNNGG 3 cut(s) 91, 129, 456
BssMI GATC 2 cut(s) 324, 622
BssSI CACGAG 1 cut(s) 430
BssT1I CCWWGG 3 cut(s) 91, 129, 456
Bst2BI CACGAG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 1015
Bst6I CTCTTC 2 cut(s) 277, 1113
BstBI TTCGAA 1 cut(s) 702
BstC8I GCNNGC 5 cut(s) 153, 157, 472, 914, 1106
BstDEI CTNAG 2 cut(s) 291, 611
BstDSI CCRYGG 2 cut(s) 129, 456
BstF5I GGATG 2 cut(s) 944, 960
BstFNI CGCG 1 cut(s) 1053
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 2 cut(s) 67, 151
BstKTI GATC 2 cut(s) 327, 625
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 2 cut(s) 324, 622
BstMWI GCNNNNNNNGC 3 cut(s) 29, 236, 471
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 2 cut(s) 349, 446
BstSCI CCNGG 2 cut(s) 336, 963
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 610
BstUI CGCG 1 cut(s) 1053
BstV1I GCAGC 4 cut(s) 231, 568, 656, 1055
BstV2I GAAGAC 2 cut(s) 789, 810
BstX2I RGATCY 2 cut(s) 324, 622
BstYI RGATCY 2 cut(s) 324, 622
BsuI GTATCC 1 cut(s) 961
BsuRI GGCC 1 cut(s) 1048
BtgI CCRYGG 2 cut(s) 129, 456
BtsCI GGATG 2 cut(s) 944, 960
BtsI GCAGTG 2 cut(s) 84, 1071
BtsIMutI CAGTG 3 cut(s) 84, 891, 1071
Cac8I GCNNGC 5 cut(s) 153, 157, 472, 914, 1106
CfoI GCGC 2 cut(s) 67, 151
Cfr13I GGNCC 1 cut(s) 742
Csp6I GTAC 3 cut(s) 182, 859, 895
CviQI GTAC 3 cut(s) 182, 859, 895
DdeI CTNAG 2 cut(s) 291, 611
DpnI GATC 2 cut(s) 326, 624
DpnII GATC 2 cut(s) 324, 622
DriI GACNNNNNGTC 1 cut(s) 748
EaeI YGGCCR 1 cut(s) 1046
Eam1104I CTCTTC 2 cut(s) 277, 1113
Eam1105I GACNNNNNGTC 1 cut(s) 748
EarI CTCTTC 2 cut(s) 277, 1113
EciI GGCGGA 1 cut(s) 644
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 3 cut(s) 91, 129, 456
Eco24I GRGCYC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 336
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 3 cut(s) 91, 129, 456
EcoT22I ATGCAT 2 cut(s) 700, 954
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 3 cut(s) 91, 129, 456
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 6 cut(s) 245, 288, 582, 645, 1046, 1069
FokI GGATG 2 cut(s) 947, 951
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 6 cut(s) 245, 288, 582, 645, 1046, 1069
FspBI CTAG 2 cut(s) 152, 909
GlaI GCGC 2 cut(s) 66, 150
GluI GCNGC 6 cut(s) 245, 288, 582, 645, 1046, 1069
GsaI CCCAGC 2 cut(s) 251, 387
GsuI CTGGAG 1 cut(s) 677
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 1048
HapII CCGG 2 cut(s) 9, 964
HhaI GCGC 2 cut(s) 67, 151
Hin6I GCGC 2 cut(s) 65, 149
HinP1I GCGC 2 cut(s) 65, 149
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 5 cut(s) 212, 503, 545, 881, 905
HpaII CCGG 2 cut(s) 9, 964
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 1011
Hpy188I TCNGA 2 cut(s) 496, 614
Hpy188III TCNNGA 5 cut(s) 71, 216, 369, 482, 842
Hpy8I GTNNAC 1 cut(s) 1011
HpyAV CCTTC 3 cut(s) 55, 528, 1058
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4IV ACGT 2 cut(s) 139, 564
HpyCH4V TGCA 9 cut(s) 298, 442, 530, 584, 602, 698, 952, 986, 1071
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 236, 471
HpyF3I CTNAG 2 cut(s) 291, 611
HpySE526I ACGT 2 cut(s) 139, 564
HspAI GCGC 2 cut(s) 65, 149
Kzo9I GATC 2 cut(s) 324, 622
LguI GCTCTTC 1 cut(s) 277
Lsp1109I GCAGC 4 cut(s) 231, 568, 656, 1055
LweI GCATC 4 cut(s) 685, 835, 939, 1012
MaeI CTAG 2 cut(s) 152, 909
MaeII ACGT 2 cut(s) 139, 564
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 326, 624
MboI GATC 2 cut(s) 324, 622
MboII GAAGA 8 cut(s) 294, 316, 509, 512, 794, 815, 1127, 1130
MflI RGATCY 2 cut(s) 324, 622
MhlI GDGCHC 2 cut(s) 399, 610
MlyI GAGTC 1 cut(s) 206
Mph1103I ATGCAT 2 cut(s) 700, 954
MseI TTAA 4 cut(s) 135, 174, 558, 716
MslI CAYNNNNRTG 1 cut(s) 703
MspA1I CMGCKG 2 cut(s) 290, 1131
MspI CCGG 2 cut(s) 9, 964
MspR9I CCNGG 2 cut(s) 338, 965
Mva1269I GAATGC 2 cut(s) 474, 698
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 1053
MwoI GCNNNNNNNGC 3 cut(s) 29, 236, 471
NciI CCSGG 1 cut(s) 965
NcoI CCATGG 2 cut(s) 129, 456
NdeII GATC 2 cut(s) 324, 622
NheI GCTAGC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 82
NsiI ATGCAT 2 cut(s) 700, 954
NspI RCATGY 2 cut(s) 349, 446
NspV TTCGAA 1 cut(s) 702
PaeR7I CTCGAG 1 cut(s) 214
PciI ACATGT 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 277
PctI GAATGC 2 cut(s) 474, 698
PfeI GAWTC 4 cut(s) 503, 545, 881, 905
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 2 cut(s) 336, 963
PkrI GCNGC 6 cut(s) 246, 289, 583, 646, 1047, 1070
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 345
PsiI TTATAA 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 2 cut(s) 247, 383
PspGI CCWGG 1 cut(s) 336
PspPI GGNCC 1 cut(s) 742
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 2 cut(s) 324, 622
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 3 cut(s) 183, 860, 896
RsaNI GTAC 3 cut(s) 182, 859, 895
RseI CAYNNNNRTG 1 cut(s) 703
SacI GAGCTC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 277
SaqAI TTAA 4 cut(s) 135, 174, 558, 716
SatI GCNGC 6 cut(s) 245, 288, 582, 645, 1046, 1069
Sau3AI GATC 2 cut(s) 324, 622
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 338, 965
SduI GDGCHC 2 cut(s) 399, 610
SfaNI GCATC 4 cut(s) 685, 835, 939, 1012
SfcI CTRYAG 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 702
SinI GGWCC 1 cut(s) 742
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SsiI CCGC 6 cut(s) 157, 288, 629, 1045, 1053, 1129
SspI AATATT 2 cut(s) 223, 982
SspMI CTAG 2 cut(s) 152, 909
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 336, 963
StyI CCWWGG 3 cut(s) 91, 129, 456
TaaI ACNGT 1 cut(s) 1015
TaiI ACGT 2 cut(s) 142, 567
TaqI TCGA 3 cut(s) 215, 483, 702
TatI WGTACW 1 cut(s) 181
TauI GCSGC 2 cut(s) 290, 1048
TfiI GAWTC 4 cut(s) 503, 545, 881, 905
Tru1I TTAA 4 cut(s) 135, 174, 558, 716
Tru9I TTAA 4 cut(s) 135, 174, 558, 716
TscAI CASTG 3 cut(s) 91, 891, 1078
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 4 cut(s) 244, 581, 644, 1068
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 5 cut(s) 62, 74, 804, 992, 1077
TspRI CASTG 3 cut(s) 91, 891, 1078
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 4 cut(s) 168, 257, 378, 1098
XceI RCATGY 2 cut(s) 349, 446
XhoI CTCGAG 1 cut(s) 214
XspI CTAG 2 cut(s) 152, 909
Zsp2I ATGCAT 2 cut(s) 700, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.