RchiOBHm_Chr7g0212731

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000379
Physical Location & Seq
Forward (+)
29942128 .. 29943574
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19037

Sequence Viewer

Length: 1293 bp
ATGAGGGCATTAAAAGATAACAACGTCACTGCCGCTGGGGTGTACGGCATGGGGGGCGTTGGAAAGACAACCCTTGTGGAACATGTTGGTCAAGAAGCTCGGAAGCAAGGCCTTTTTGATCATGTGATTATGGTTAGAGTTAATCAAACCCCTGATTTGAAAAGAATTCAAGCCATTTTGGCCGATGGGCTAGGCATCAAATTGATGAACGAGACAGATGAGGGAAGAGCTTCTAGATTGTCTTCAGAGATAATGAGAAGAAATAAAATCCTTATAATCTTGGACAACGTTTGGGGTAGACTAGACCTGCCAAGCATAGGAATTCCCAGCCACAACATGCTTCAGAGTTGCAACTCCAAAGTCCTACTTACCACAAGGATATGGAATGTTTGTCATGTCATGATGAGCCAAGAAAATATCACCCTCAGTACCCTATCGAAAGAAGATTCATGGACATTGTTTGTGAAATATGCAAGAAAGTCTTTTGAGTCGACCTATTTCAAGGATGTTGCGAGGAAGGTAGCTAGAGAATGTGGTGGTCTACCAATTGCATTGATAGCAGTTGCAATGGCACTTGGAGATAAAGACCTGACAGAATGGAAATACGCAGCTCAACTGCTAGAGAAGTCGCGTGCTGCCAACCCTGACGATAATGGAGAAGCATCCAAATGCATAAAACTAAGTTATGATTTCTTGAAAGATGAGGACTCCAAATCATGCTTCTTGCTTTGTTGCCTATTCCCAGAAGACTATGACATCCGAATAGAAGACTTGTTCAAGTATGGGATCGGGATCGGGTTGTTTCAAGATACTGACACAATCCAAGAAGCCAGAGGAAAAGCTCGTTCAGTGGCCAAGCACCTTACACATTCTAGCTTGCTTTTGGATAGGGGAATTGATGGATGTGTTACGATGCATGATGTCATCCGGGATACAGCCATTCAAATTGCACGATCTGAAGACGAGCACGGATTTTTCGTAGAAGCTGGCTGTGGTTTGAAGAATTGGCCACGTCGATTGCGTGAAGGCCATTCTGCAATTTCAGTCATGACGAACGACATTCGCGAGCTACCTGAAGAGCTGGTATGTCCGAAGCTCCAAATTTTATTGCTACAAGAGAATTATTTTTTAGATCAGATCCCTGATACTTGTTTCAAAAATACTAGTTTACTAAGAGTCGTCGATCTTAGTTACACTAGTATATCATCCCTATCCATGTCATTTATTCACCTAAGCAATCTCCAAGCCAGGGTTCAGTGCGTGGAGGTATCGTCAGAATTCCATCTGGGGTGA

Protein Analysis

430

Amino Acids

48.24

Weight (kDa)

6.15

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 6 - 159 3.7e-27 NB-ARC domain
LRR_8 PF13855 364 - 415 9.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 315
AccI GTMKAC 3 cut(s) 298, 491, 541
AccII CGCG 2 cut(s) 631, 1065
AciI CCGC 1 cut(s) 33
AclI AACGTT 1 cut(s) 288
AclWI GGATC 3 cut(s) 794, 800, 1132
AcoI YGGCCR 3 cut(s) 180, 852, 1007
AcsI RAATTY 4 cut(s) 165, 321, 1101, 1277
AcuI CTGAAG 4 cut(s) 228, 326, 978, 1095
AfaI GTAC 2 cut(s) 44, 430
AfiI CCNNNNNNNGG 2 cut(s) 317, 1249
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 9 cut(s) 160, 170, 502, 697, 778, 806, 944, 1000, 1156
AhlI ACTAGT 2 cut(s) 1163, 1196
AjiI CACGTC 1 cut(s) 1013
AjnI CCWGG 1 cut(s) 1247
AjuI GAANNNNNNNTTGG 4 cut(s) 704, 736, 1236, 1268
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 3 cut(s) 794, 800, 1132
AoxI GGCC 5 cut(s) 109, 180, 852, 1007, 1027
ApeKI GCWGC 2 cut(s) 608, 635
ApoI RAATTY 4 cut(s) 165, 321, 1101, 1277
Asp700I GAANNNNTTC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 929
AsuHPI GGTGA 2 cut(s) 412, 1220
BalI TGGCCA 2 cut(s) 854, 1009
BbsI GAAGAC 4 cut(s) 234, 753, 774, 966
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 2 cut(s) 620, 622
BccI CCATC 3 cut(s) 179, 893, 1290
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 1249
BciVI GTATCC 1 cut(s) 925
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 929
BcoDI GTCTC 1 cut(s) 206
BcuI ACTAGT 2 cut(s) 1163, 1196
BfaI CTAG 8 cut(s) 191, 234, 302, 525, 620, 873, 1164, 1197
BfuAI ACCTGC 1 cut(s) 315
BfuI GTATCC 1 cut(s) 925
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 3 cut(s) 33, 609, 636
BlsI GCNGC 3 cut(s) 34, 610, 637
Bme1390I CCNGG 2 cut(s) 929, 1249
BmgBI CACGTC 1 cut(s) 1013
BmrFI CCNGG 2 cut(s) 929, 1249
BmsI GCATC 3 cut(s) 204, 671, 903
BpiI GAAGAC 4 cut(s) 234, 753, 774, 966
Bpu10I CCTNAGC 1 cut(s) 1232
BpuMI CCSGG 1 cut(s) 929
BsaBI GATNNNNATC 1 cut(s) 791
BsaJI CCNNGG 1 cut(s) 1248
BsaXI ACNNNNNCTCC 2 cut(s) 1256, 1286
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 1249
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 791
BseBI CCWGG 1 cut(s) 1249
BseDI CCNNGG 1 cut(s) 1248
BseGI GGATG 6 cut(s) 511, 662, 756, 908, 924, 1205
BseJI GATNNNNATC 1 cut(s) 791
BseLI CCNNNNNNNGG 2 cut(s) 317, 1249
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 1 cut(s) 439
BseXI GCAGC 2 cut(s) 620, 622
BseYI CCCAGC 2 cut(s) 35, 326
Bsh1236I CGCG 2 cut(s) 631, 1065
BshFI GGCC 5 cut(s) 111, 182, 854, 1009, 1029
BsiHKAI GWGCWC 1 cut(s) 969
BsiSI CCGG 1 cut(s) 928
BslI CCNNNNNNNGG 2 cut(s) 317, 1249
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 5 cut(s) 111, 182, 854, 1009, 1029
Bsp1286I GDGCHC 1 cut(s) 969
Bsp143I GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
Bsp68I TCGCGA 1 cut(s) 1065
BspACI CCGC 1 cut(s) 33
BspANI GGCC 5 cut(s) 111, 182, 854, 1009, 1029
BspCNI CTCAG 1 cut(s) 438
BspFNI CGCG 2 cut(s) 631, 1065
BspHI TCATGA 2 cut(s) 399, 1047
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 3 cut(s) 794, 800, 1132
BspQI GCTCTTC 2 cut(s) 220, 1071
BsrDI GCAATG 1 cut(s) 573
BssECI CCNNGG 1 cut(s) 1248
BssMI GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
Bst2UI CCWGG 1 cut(s) 1249
Bst6I CTCTTC 2 cut(s) 220, 1071
BstC8I GCNNGC 4 cut(s) 633, 878, 988, 1067
BstDEI CTNAG 5 cut(s) 425, 680, 1172, 1187, 1232
BstF5I GGATG 6 cut(s) 511, 662, 756, 908, 924, 1205
BstFNI CGCG 2 cut(s) 631, 1065
BstKTI GATC 7 cut(s) 121, 789, 795, 956, 1135, 1140, 1186
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
BstMWI GCNNNNNNNGC 3 cut(s) 54, 179, 557
BstNI CCWGG 1 cut(s) 1249
BstNSI RCATGY 2 cut(s) 86, 340
BstSCI CCNGG 2 cut(s) 927, 1247
BstUI CGCG 2 cut(s) 631, 1065
BstV1I GCAGC 2 cut(s) 620, 622
BstV2I GAAGAC 4 cut(s) 234, 753, 774, 966
BstX2I RGATCY 1 cut(s) 1137
BstYI RGATCY 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 5 cut(s) 111, 182, 854, 1009, 1029
BtrI CACGTC 1 cut(s) 1013
BtsCI GGATG 6 cut(s) 511, 662, 756, 908, 924, 1205
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 3 cut(s) 27, 855, 1262
BtuMI TCGCGA 1 cut(s) 1065
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 4 cut(s) 633, 878, 988, 1067
CciI TCATGA 2 cut(s) 399, 1047
Csp6I GTAC 2 cut(s) 43, 429
CspCI CAANNNNNGTGG 4 cut(s) 57, 92, 999, 1034
CviQI GTAC 2 cut(s) 43, 429
DdeI CTNAG 5 cut(s) 425, 680, 1172, 1187, 1232
DpnI GATC 7 cut(s) 120, 788, 794, 955, 1134, 1139, 1185
DpnII GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
EaeI YGGCCR 3 cut(s) 180, 852, 1007
Eam1104I CTCTTC 2 cut(s) 220, 1071
EarI CTCTTC 2 cut(s) 220, 1071
Eco147I AGGCCT 1 cut(s) 111
Eco57I CTGAAG 4 cut(s) 228, 326, 978, 1095
EcoRI GAATTC 3 cut(s) 165, 321, 1277
EcoRII CCWGG 1 cut(s) 1247
EcoT22I ATGCAT 2 cut(s) 674, 918
FalI AAGNNNNNCTT 4 cut(s) 351, 383, 466, 498
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 3 cut(s) 298, 491, 541
Fnu4HI GCNGC 3 cut(s) 33, 609, 636
FokI GGATG 6 cut(s) 518, 649, 743, 911, 915, 1192
Fsp4HI GCNGC 3 cut(s) 33, 609, 636
FspBI CTAG 8 cut(s) 191, 234, 302, 525, 620, 873, 1164, 1197
GluI GCNGC 3 cut(s) 33, 609, 636
GsaI CCCAGC 2 cut(s) 39, 330
HaeIII GGCC 5 cut(s) 111, 182, 854, 1009, 1029
HapII CCGG 1 cut(s) 928
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 4 cut(s) 446, 488, 707, 1176
HpaII CCGG 1 cut(s) 928
HphI GGTGA 2 cut(s) 412, 1220
Hpy166II GTNNAC 5 cut(s) 43, 299, 492, 542, 1169
Hpy188I TCNGA 8 cut(s) 102, 247, 345, 761, 958, 1092, 1137, 1276
Hpy188III TCNNGA 8 cut(s) 92, 234, 400, 694, 790, 806, 1048, 1064
Hpy8I GTNNAC 5 cut(s) 43, 299, 492, 542, 1169
Hpy99I CGWCG 2 cut(s) 1017, 1184
HpyAV CCTTC 2 cut(s) 511, 1019
HpyCH4IV ACGT 3 cut(s) 24, 288, 1012
HpyCH4V TGCA 8 cut(s) 351, 473, 551, 566, 672, 916, 950, 1037
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 179, 557
HpyF3I CTNAG 5 cut(s) 425, 680, 1172, 1187, 1232
HpySE526I ACGT 3 cut(s) 24, 288, 1012
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
LguI GCTCTTC 2 cut(s) 220, 1071
LmnI GCTCC 1 cut(s) 1101
Lsp1109I GCAGC 2 cut(s) 620, 622
LweI GCATC 3 cut(s) 204, 671, 903
MaeI CTAG 8 cut(s) 191, 234, 302, 525, 620, 873, 1164, 1197
MaeII ACGT 3 cut(s) 24, 288, 1012
MaeIII GTNAC 3 cut(s) 25, 907, 1190
MalI GATC 7 cut(s) 120, 788, 794, 955, 1134, 1139, 1185
MboI GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
MboII GAAGA 9 cut(s) 234, 237, 270, 455, 758, 779, 971, 1012, 1088
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 1 cut(s) 1137
MhlI GDGCHC 1 cut(s) 969
MlsI TGGCCA 2 cut(s) 854, 1009
MluNI TGGCCA 2 cut(s) 854, 1009
MlyI GAGTC 3 cut(s) 497, 701, 1185
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 6 cut(s) 214, 434, 507, 697, 827, 1258
Mox20I TGGCCA 2 cut(s) 854, 1009
Mph1103I ATGCAT 2 cut(s) 674, 918
MroXI GAANNNNTTC 1 cut(s) 229
MscI TGGCCA 2 cut(s) 854, 1009
MseI TTAA 2 cut(s) 11, 141
MslI CAYNNNNRTG 1 cut(s) 667
Msp20I TGGCCA 2 cut(s) 854, 1009
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 928
MspR9I CCNGG 2 cut(s) 929, 1249
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 1249
MvnI CGCG 2 cut(s) 631, 1065
MwoI GCNNNNNNNGC 3 cut(s) 54, 179, 557
NciI CCSGG 1 cut(s) 929
NdeII GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
NmuCI GTSAC 1 cut(s) 25
NruI TCGCGA 1 cut(s) 1065
NsiI ATGCAT 2 cut(s) 674, 918
NspI RCATGY 2 cut(s) 86, 340
PagI TCATGA 2 cut(s) 399, 1047
PceI AGGCCT 1 cut(s) 111
PciI ACATGT 1 cut(s) 82
PciSI GCTCTTC 2 cut(s) 220, 1071
PcsI WCGNNNNNNNCGW 3 cut(s) 975, 1018, 1062
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 927
PkrI GCNGC 3 cut(s) 34, 610, 637
PleI GAGTC 3 cut(s) 496, 701, 1184
PpsI GAGTC 3 cut(s) 496, 701, 1184
PscI ACATGT 1 cut(s) 82
PsiI TTATAA 1 cut(s) 275
Psp1406I AACGTT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 1247
PspFI CCCAGC 2 cut(s) 35, 326
PspGI CCWGG 1 cut(s) 1247
PsuI RGATCY 1 cut(s) 1137
RruI TCGCGA 1 cut(s) 1065
RsaI GTAC 2 cut(s) 44, 430
RsaNI GTAC 2 cut(s) 43, 429
RseI CAYNNNNRTG 1 cut(s) 667
SalI GTCGAC 1 cut(s) 490
SapI GCTCTTC 2 cut(s) 220, 1071
SaqAI TTAA 2 cut(s) 11, 141
SatI GCNGC 3 cut(s) 33, 609, 636
Sau3AI GATC 7 cut(s) 118, 786, 792, 953, 1132, 1137, 1183
SchI GAGTC 3 cut(s) 497, 701, 1185
ScrFI CCNGG 2 cut(s) 929, 1249
SduI GDGCHC 1 cut(s) 969
SfaNI GCATC 3 cut(s) 204, 671, 903
SmiMI CAYNNNNRTG 1 cut(s) 667
SpeI ACTAGT 2 cut(s) 1163, 1196
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 1 cut(s) 33
SspMI CTAG 8 cut(s) 191, 234, 302, 525, 620, 873, 1164, 1197
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 927, 1247
TaiI ACGT 3 cut(s) 27, 291, 1015
TaqI TCGA 4 cut(s) 437, 491, 1015, 1182
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 2 cut(s) 11, 141
Tru9I TTAA 2 cut(s) 11, 141
TscAI CASTG 3 cut(s) 34, 855, 1262
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 608, 635
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 221, 438
TspGWI ACGGA 1 cut(s) 984
TspRI CASTG 3 cut(s) 34, 855, 1262
XapI RAATTY 4 cut(s) 165, 321, 1101, 1277
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 2 cut(s) 86, 340
XmiI GTMKAC 3 cut(s) 298, 491, 541
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 8 cut(s) 191, 234, 302, 525, 620, 873, 1164, 1197
Zsp2I ATGCAT 2 cut(s) 674, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.