Rw7G030960

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000379
Physical Location & Seq
Forward (+)
44033306 .. 44034328
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030960.1

Sequence Viewer

Length: 1023 bp
ATGGATGAGGTTATAAAGGCAGCAAAAGATGACAAGGTCACTGCCGTTGGGGTCTTCGGAAGGGGAGGCGTCGGCAAGACAACCATGGTAAAACACGTCGCTATGCAAGCCTTCAAGAAGGGGATTTTTGACCAAGTGATTATGGCTGTCGTATCAGAACGCCCTGACTTCAAAAGAGTTCAACAGACATTGGCAAAGCAGCTGGGATTCGAATTCAAGCGGGAGACAGAAATTGGAAGAGCAGCTAGATTGCGTAAGGAGATAATGAGAAGAAGCAAGATTCTTATAATCCTGAATGACATTTGGGAGAGAATGAATTTGTCAAGCTTAGGTATTCCCAGCCCAAATGAGCTACGAATGTGCAATTCCAAAGTCCTACTCACCACAAGGAGATTGAATGTCTGGCATGTCATGGAGTGCCAACGAAAGATCAGCCTCAACGCTCTCTCAGAAGAAGATTCTTGGGCCTTGTTTGTGAGAAATGCAGGAAGGTCTTTTGAATCGAATTTCAAGGATGTAGCGATGATGGTAGCTAGAGAGTGTTGTGGTCTACCGATTGCATTGATAGCGGTTGCAAGGGCACTTGGAGATAAAAAACTACAGGAATGGAAAAGAGCAGCTCGAGCACTAAAGAACTCGCAATTTGCCAACCCTGATGGTCACGGAGAAGCATCCAAATGTATAAAATTAAGCTATGATTACCTGAAAGATGAGGATTCCAAGTTATGCTTCTTGTTTTGTGCCTGCTTATTTCCAGAATACCATGATATCCAAATAGAAGACTTGTTCCAGCAGGCATATGGGAAAGGATTGTTTCGAGATGCTGACACTATCGAAGAAGCCAGAGGAAAAGCAGATTCAGTGGTCAGGTACCTGAAAGATTCTAGCTTGCTTTTGGATAGTGAAGAAGATGGATGTGTAAGGATGCATCCTGTCGTCCGGGACACAGCCCTGAGAATTGCATCATCTGAAGATAGGCATGGGTTTTTGGTCAAAGCTGATTTTAGTCTGCAATCTCACTAA

Protein Analysis

340

Amino Acids

38.53

Weight (kDa)

8.87

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 7 - 163 9.5e-27 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 14, 287
Acc65I GGTACC 1 cut(s) 870
AccB1I GGYRCC 1 cut(s) 870
AccI GTMKAC 1 cut(s) 550
AciI CCGC 2 cut(s) 220, 569
AcsI RAATTY 3 cut(s) 212, 316, 505
AcuI CTGAAG 1 cut(s) 990
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 872
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 7 cut(s) 115, 172, 182, 217, 397, 500, 511
AjiI CACGTC 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
AluBI AGCT 9 cut(s) 202, 245, 327, 352, 533, 620, 693, 888, 998
AluI AGCT 9 cut(s) 202, 245, 327, 352, 533, 620, 693, 888, 998
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 621
AoxI GGCC 1 cut(s) 465
ApeKI GCWGC 4 cut(s) 20, 199, 242, 617
ApoI RAATTY 3 cut(s) 212, 316, 505
Asp718I GGTACC 1 cut(s) 870
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 621
BaeGI GKGCMC 1 cut(s) 583
BanI GGYRCC 1 cut(s) 870
BbsI GAAGAC 2 cut(s) 46, 786
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 4 cut(s) 32, 211, 254, 629
BccI CCATC 3 cut(s) 520, 650, 905
BceAI ACGGC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 3 cut(s) 246, 534, 885
BfmI CTRYAG 1 cut(s) 599
BisI GCNGC 4 cut(s) 21, 200, 243, 618
BlsI GCNGC 4 cut(s) 22, 201, 244, 619
Bme1390I CCNGG 1 cut(s) 941
BmeT110I CYCGRG 1 cut(s) 621
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 872
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 5 cut(s) 680, 811, 915, 937, 971
BpiI GAAGAC 2 cut(s) 46, 786
Bpu10I CCTNAGC 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 941
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 6 cut(s) 10, 520, 671, 920, 928, 930
BseMII CTCAG 2 cut(s) 462, 944
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 4 cut(s) 32, 211, 254, 629
BseYI CCCAGC 2 cut(s) 202, 338
BshFI GGCC 1 cut(s) 467
BshNI GGYRCC 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 621
BsiSI CCGG 1 cut(s) 940
BslFI GGGAC 1 cut(s) 956
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 956
BsnI GGCC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 621
Bsp119I TTCGAA 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 583, 628
Bsp143I GATC 1 cut(s) 429
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 2 cut(s) 220, 569
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 2 cut(s) 461, 945
BspLI GGNNCC 1 cut(s) 872
BspQI GCTCTTC 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 870
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 429
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 4 cut(s) 108, 745, 795, 890
BstDEI CTNAG 3 cut(s) 328, 448, 953
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 6 cut(s) 10, 520, 671, 920, 928, 930
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 3 cut(s) 107, 566, 623
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 939
BstSFI CTRYAG 1 cut(s) 599
BstSLI GKGCMC 1 cut(s) 583
BstV1I GCAGC 4 cut(s) 32, 211, 254, 629
BstV2I GAAGAC 2 cut(s) 46, 786
BsuRI GGCC 1 cut(s) 467
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 536
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 6 cut(s) 10, 520, 671, 920, 928, 930
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 867
Cac8I GCNNGC 4 cut(s) 108, 745, 795, 890
Cfr13I GGNCC 1 cut(s) 465
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 871
CviAII CATG 5 cut(s) 85, 407, 412, 764, 980
CviQI GTAC 1 cut(s) 871
DdeI CTNAG 3 cut(s) 328, 448, 953
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 84
Eco32I GATATC 1 cut(s) 769
Eco57I CTGAAG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 621
EcoRI GAATTC 1 cut(s) 212
EcoRV GATATC 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 5 cut(s) 88, 410, 415, 767, 983
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 1 cut(s) 956
FatI CATG 5 cut(s) 84, 406, 411, 763, 979
FauI CCCGC 1 cut(s) 213
FauNDI CATATG 1 cut(s) 799
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 4 cut(s) 21, 200, 243, 618
FokI GGATG 6 cut(s) 17, 527, 658, 915, 927, 937
Fsp4HI GCNGC 4 cut(s) 21, 200, 243, 618
FspBI CTAG 3 cut(s) 246, 534, 885
GluI GCNGC 4 cut(s) 21, 200, 243, 618
GsaI CCCAGC 2 cut(s) 206, 342
HaeIII GGCC 1 cut(s) 467
HapII CCGG 1 cut(s) 940
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 5 cut(s) 88, 410, 415, 767, 983
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 7 cut(s) 207, 280, 458, 500, 716, 857, 881
HpaII CCGG 1 cut(s) 940
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 4 cut(s) 59, 157, 451, 970
Hpy188III TCNNGA 4 cut(s) 115, 292, 755, 818
Hpy8I GTNNAC 1 cut(s) 551
Hpy99I CGWCG 2 cut(s) 74, 101
HpyAV CCTTC 4 cut(s) 54, 112, 121, 483
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 8 cut(s) 106, 363, 485, 560, 575, 928, 962, 1012
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 566, 623
HpyF3I CTNAG 3 cut(s) 328, 448, 953
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 5 cut(s) 88, 410, 415, 767, 983
KpnI GGTACC 1 cut(s) 874
Kzo9I GATC 1 cut(s) 429
LguI GCTCTTC 1 cut(s) 232
Lsp1109I GCAGC 4 cut(s) 32, 211, 254, 629
LweI GCATC 5 cut(s) 680, 811, 915, 937, 971
MaeI CTAG 3 cut(s) 246, 534, 885
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 37, 659
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 583, 628
MluCI AATT 8 cut(s) 212, 231, 316, 364, 505, 641, 686, 957
MnlI CCTC 4 cut(s) 59, 446, 706, 839
Mph1103I ATGCAT 1 cut(s) 930
MseI TTAA 1 cut(s) 689
MslI CAYNNNNRTG 1 cut(s) 676
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 1 cut(s) 940
MspR9I CCNGG 1 cut(s) 941
MwoI GCNNNNNNNGC 3 cut(s) 107, 566, 623
NciI CCSGG 1 cut(s) 941
NcoI CCATGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 799
NdeII GATC 1 cut(s) 429
NlaIII CATG 5 cut(s) 88, 410, 415, 767, 983
NlaIV GGNNCC 1 cut(s) 872
NmuCI GTSAC 2 cut(s) 37, 659
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 1 cut(s) 410
NspV TTCGAA 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 621
PciSI GCTCTTC 1 cut(s) 232
PfeI GAWTC 7 cut(s) 207, 280, 458, 500, 716, 857, 881
PflFI GACNNNGTC 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 939
PkrI GCNGC 4 cut(s) 22, 201, 244, 619
PsiI TTATAA 2 cut(s) 14, 287
PspFI CCCAGC 2 cut(s) 202, 338
PspN4I GGNNCC 1 cut(s) 872
PspPI GGNCC 1 cut(s) 465
PspXI VCTCGAGB 1 cut(s) 621
PsyI GACNNNGTC 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 872
RsaNI GTAC 1 cut(s) 871
RseI CAYNNNNRTG 1 cut(s) 676
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 4 cut(s) 21, 200, 243, 618
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 1 cut(s) 465
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 2 cut(s) 583, 628
SfaNI GCATC 5 cut(s) 680, 811, 915, 937, 971
SfcI CTRYAG 1 cut(s) 599
Sfr274I CTCGAG 1 cut(s) 621
SfuI TTCGAA 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 676
SmlI CTYRAG 1 cut(s) 621
SmoI CTYRAG 1 cut(s) 621
Sse9I AATT 8 cut(s) 212, 231, 316, 364, 505, 641, 686, 957
SsiI CCGC 2 cut(s) 220, 569
SspMI CTAG 3 cut(s) 246, 534, 885
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 99
TaqI TCGA 5 cut(s) 210, 503, 622, 817, 834
TasI AATT 8 cut(s) 212, 231, 316, 364, 505, 641, 686, 957
TfiI GAWTC 7 cut(s) 207, 280, 458, 500, 716, 857, 881
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 2 cut(s) 46, 867
TseFI GTSAC 2 cut(s) 37, 659
TseI GCWGC 4 cut(s) 20, 199, 242, 617
Tsp45I GTSAC 2 cut(s) 37, 659
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 2 cut(s) 46, 867
Tth111I GACNNNGTC 1 cut(s) 35
XapI RAATTY 3 cut(s) 212, 316, 505
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XhoI CTCGAG 1 cut(s) 621
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 3 cut(s) 246, 534, 885
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.