RchiOBHm_Chr5g0078181

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000379
Physical Location & Seq
Reverse (-)
84107137 .. 84108407
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35272

Sequence Viewer

Length: 1191 bp
ATGGGAGGCGTTGGAAAGACAACCATGGTGAAACATGTCGGTGCACATGCCCGAAAAAGTGGGATTTTTGATCATGTGATTATGGGTGTCGTATCCCAAAGCCCTGACTACAGAAAAATTCAAGGCACATTAGCAGACCTGTTAGGCGTCAAATTGGAGGGAGAGACAGAAATTGGAAGAGCAGCTGGATTGAGTAAGGAGATGAAGAGAAGAAATAAGATCCTTATAATCCTGGACGACATTTGGGGGAGAACAGAGTTGTCAAAGATAGGGATTCCCAGCTACGAGGAGCTTCAGAAGTGCAAATCCAAAGTCCTACTCACCACAAGGATATGGAATGTCTGTCATGTCATGAGATGCCAAAGAAAGATCATTCTCAGTACCTTATCAGAAAAAGATTCTTGGACTTTGTTTGTGAGAAATGCAGAAAGTTGTTTTGAATCGACCACTTTTGAGGGTGTAGCGAAGAAGGTAGCTGGAGAATGTAGGGGTCTACCCATTGCATTGATAGCTGTTGCAAGGGCACTTGGAGATAAAGAACTGGTGGAATGGAAAAGAGCAGCTCAACGACTAGAGAAGTCGCAAATTGCCAACCCTGATGATAAGGGAGATGCATTCGAATGTATAAAATTGAGCTTTGATTACTTGAAAGATGAGGACCACAAGTCATTCTTCTTGCTCTGTTGCCTATTCCCAGAAGACCGTGAAATCAATATAGAAGACTTGTTCAGGTATGCAATTGGAAAAGGATTGTTTCAAGATGCTGAAACAATGGACGAAGCCAGAGGAACAGCAGATTCAGTGGTCAAGTACCTGAAAGATTCTAGCTTGCTTTTGGAGAGTGAATACATTGGATTTGTAAAGATGCATGATGTTGTCCGAGATACAGCCATTCAAATTGCGCAATTTGAACATGGGTTTTTGGTGAGAGCTGGCTGTGGTTTAAAGGACTGGCCACGTCAATTACATGAAGGCTATTCTGCAGTCTCACTAATGCACAATCATATTACCAAGCTACCCGAAAAGTTTGTATGTCCAGAACTCCAGATTTTGTTACTAAACAATAATACGTTTATAGATGCGTGGATACCTATGGATATCCCAGAAACCTTTTTTCAAACTCCAAATGAATTAAGGGTCTTAGATCTTAGCCAGATTATTACTTCATTGCTACCCCAATCGCTGTCTTGA

Protein Analysis

396

Amino Acids

44.71

Weight (kDa)

6.24

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 140 2.7e-23 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_1g17740 FvH4_3g42940 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43860 FvH4_3g43871 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43880 FvH4_3g43940 FvH4_3g43991 FvH4_3g44561 FvH4_3g44570 FvH4_3g44610 FvH4_3g44670 FvH4_3g44670 FvH4_3g44680 FvH4_3g44680 FvH4_3g44680 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45170 FvH4_3g45630 FvH4_3g45643 FvH4_3g45680 FvH4_3g45690 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45700 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45711 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730 FvH4_3g45730
malus_domestica MD11G1020200.v1.1 MD15G1398500.v1.1
rosa_chinensis RchiOBHm_Chr1g0326201 RchiOBHm_Chr5g0064091 RchiOBHm_Chr5g0076771 RchiOBHm_Chr5g0078181 RchiOBHm_Chr5g0078321 RchiOBHm_Chr5g0079331 RchiOBHm_Chr5g0079341 RchiOBHm_Chr5g0079351 RchiOBHm_Chr5g0079361 RchiOBHm_Chr5g0079441 RchiOBHm_Chr5g0079821 RchiOBHm_Chr5g0080071 RchiOBHm_Chr7g0212731 RchiOBHm_Chr7g0224201
rosa_laevigata RLG00000002871
rosa_multiflora Rmu_co8378879.1_g000001 Rmu_co8466133.1_g000001 Rmu_sc0000595.1_g000019 Rmu_sc0000616.1_g000025 Rmu_sc0000631.1_g000033 Rmu_sc0000945.1_g000004 Rmu_sc0001148.1_g000022 Rmu_sc0001226.1_g000016 Rmu_sc0002187.1_g000037 Rmu_sc0006084.1_g000005 Rmu_sc0006084.1_g000009 Rmu_sc0006084.1_g000019 Rmu_sc0006084.1_g000021
rosa_roxburghii Rroxscaffold_1G00001540 Rroxscaffold_1G00003210 Rroxscaffold_1G00003250 Rroxscaffold_1G00003340 Rroxscaffold_1G00003580 Rroxscaffold_1G00003940 Rroxscaffold_3G00228660 Rroxscaffold_3G00247850
rosa_rugosa Rorug05G0465800 Rorug05G0466100 Rorug07G0125700 Rorug07G0136300
rosa_wichuraiana Rw0G005160 Rw0G022760 Rw5G047710 Rw5G048070 Rw5G048080 Rw5G048150 Rw5G048180 Rw5G048210 Rw5G048250 Rw5G048290 Rw7G023250 Rw7G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
Acc16I TGCGCA 1 cut(s) 903
AccI GTMKAC 1 cut(s) 493
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 953
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 382, 812
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 7 cut(s) 122, 440, 649, 758, 896, 911, 1118
AhdI GACNNNNNGTC 1 cut(s) 664
AjiI CACGTC 1 cut(s) 959
AjnI CCWGG 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 158, 991
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 214
AoxI GGCC 1 cut(s) 953
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 182, 560
ApoI RAATTY 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 40, 313, 937
AsuII TTCGAA 1 cut(s) 618
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 2 cut(s) 46, 526
BalI TGGCCA 1 cut(s) 955
BbsI GAAGAC 2 cut(s) 705, 726
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 194, 572
BciT130I CCWGG 1 cut(s) 233
BciVI GTATCC 2 cut(s) 103, 1080
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 158, 991
BfaI CTAG 2 cut(s) 572, 825
BfmI CTRYAG 2 cut(s) 109, 981
BfuI GTATCC 2 cut(s) 103, 1080
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 2 cut(s) 183, 561
BlsI GCNGC 2 cut(s) 184, 562
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 658
BmeRI GACNNNNNGTC 1 cut(s) 664
BmgBI CACGTC 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 658
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 5 cut(s) 347, 601, 751, 855, 1069
BpiI GAAGAC 2 cut(s) 705, 726
BpmI CTGGAG 2 cut(s) 498, 1028
Bpu14I TTCGAA 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 546, 956
Bse3DI GCAATG 2 cut(s) 498, 1166
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 24
BseMI GCAATG 2 cut(s) 498, 1166
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 2 cut(s) 546, 956
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 2 cut(s) 46, 526
BseXI GCAGC 2 cut(s) 194, 572
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 46
BsmAI GTCTC 2 cut(s) 158, 991
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 1 cut(s) 955
Bsp119I TTCGAA 1 cut(s) 618
Bsp1286I GDGCHC 2 cut(s) 46, 526
Bsp143I GATC 4 cut(s) 70, 219, 369, 1144
Bsp19I CCATGG 1 cut(s) 24
BspANI GGCC 1 cut(s) 955
BspCNI CTCAG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 985
BspPI GGATC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 618
BsrDI GCAATG 2 cut(s) 498, 1166
BsrI ACTGG 2 cut(s) 546, 956
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 70, 219, 369, 1144
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 2 cut(s) 172, 200
BstACI GRCGYC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 2 cut(s) 830, 934
BstDEI CTNAG 3 cut(s) 377, 1141, 1148
BstDSI CCRYGG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 4 cut(s) 73, 222, 372, 1147
BstMAI GTCTC 2 cut(s) 158, 991
BstMBI GATC 4 cut(s) 70, 219, 369, 1144
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 2 cut(s) 38, 50
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 2 cut(s) 109, 981
BstSLI GKGCMC 2 cut(s) 46, 526
BstV1I GCAGC 2 cut(s) 194, 572
BstV2I GAAGAC 2 cut(s) 705, 726
BstX2I RGATCY 2 cut(s) 219, 1144
BstYI RGATCY 2 cut(s) 219, 1144
BsuI GTATCC 2 cut(s) 103, 1080
BsuRI GGCC 1 cut(s) 955
BtgI CCRYGG 1 cut(s) 24
BtrI CACGTC 1 cut(s) 959
BtsIMutI CAGTG 1 cut(s) 807
Cac8I GCNNGC 2 cut(s) 830, 934
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 904
Cfr13I GGNCC 1 cut(s) 658
CseI GACGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 381, 811
CviAII CATG 9 cut(s) 25, 35, 47, 74, 347, 352, 869, 914, 968
CviQI GTAC 2 cut(s) 381, 811
DdeI CTNAG 3 cut(s) 377, 1141, 1148
DpnI GATC 4 cut(s) 72, 221, 371, 1146
DpnII GATC 4 cut(s) 70, 219, 369, 1144
DraI TTTAAA 1 cut(s) 945
DriI GACNNNNNGTC 1 cut(s) 664
EaeI YGGCCR 1 cut(s) 953
Eam1104I CTCTTC 2 cut(s) 172, 200
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 2 cut(s) 172, 200
Eco130I CCWWGG 1 cut(s) 24
Eco32I GATATC 1 cut(s) 1099
Eco47I GGWCC 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 231
EcoRV GATATC 1 cut(s) 1099
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 2 cut(s) 616, 870
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 9 cut(s) 28, 38, 50, 77, 350, 355, 872, 917, 971
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FatI CATG 9 cut(s) 24, 34, 46, 73, 346, 351, 868, 913, 967
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 2 cut(s) 183, 561
Fsp4HI GCNGC 2 cut(s) 183, 561
FspBI CTAG 2 cut(s) 572, 825
FspI TGCGCA 1 cut(s) 903
GlaI GCGC 1 cut(s) 903
GluI GCNGC 2 cut(s) 183, 561
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 2 cut(s) 498, 1028
HaeIII GGCC 1 cut(s) 955
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 904
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 9 cut(s) 28, 38, 50, 77, 350, 355, 872, 917, 971
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HinfI GANTC 5 cut(s) 274, 398, 440, 797, 821
HphI GGTGA 3 cut(s) 40, 313, 937
Hpy166II GTNNAC 2 cut(s) 44, 494
Hpy188I TCNGA 3 cut(s) 297, 391, 881
Hpy188III TCNNGA 5 cut(s) 352, 758, 1037, 1045, 1188
Hpy8I GTNNAC 2 cut(s) 44, 494
HpyAV CCTTC 2 cut(s) 463, 965
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 2 cut(s) 958, 1070
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 3 cut(s) 377, 1141, 1148
HpySE526I ACGT 2 cut(s) 958, 1070
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 9 cut(s) 28, 38, 50, 77, 350, 355, 872, 917, 971
HspAI GCGC 1 cut(s) 902
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 70, 219, 369, 1144
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 194, 572
LweI GCATC 5 cut(s) 347, 601, 751, 855, 1069
MaeI CTAG 2 cut(s) 572, 825
MaeII ACGT 2 cut(s) 958, 1070
MaeIII GTNAC 1 cut(s) 1053
MalI GATC 4 cut(s) 72, 221, 371, 1146
MboI GATC 4 cut(s) 70, 219, 369, 1144
MboII GAAGA 7 cut(s) 189, 217, 222, 478, 664, 710, 731
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 2 cut(s) 219, 1144
MhlI GDGCHC 2 cut(s) 46, 526
MlsI TGGCCA 1 cut(s) 955
MluNI TGGCCA 1 cut(s) 955
MnlI CCTC 5 cut(s) 151, 280, 448, 649, 779
Mox20I TGGCCA 1 cut(s) 955
Mph1103I ATGCAT 2 cut(s) 616, 870
MscI TGGCCA 1 cut(s) 955
MseI TTAA 2 cut(s) 944, 1133
MslI CAYNNNNRTG 2 cut(s) 39, 619
Msp20I TGGCCA 1 cut(s) 955
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 509
NcoI CCATGG 1 cut(s) 24
NdeII GATC 4 cut(s) 70, 219, 369, 1144
NlaIII CATG 9 cut(s) 28, 38, 50, 77, 350, 355, 872, 917, 971
NsbI TGCGCA 1 cut(s) 903
NsiI ATGCAT 2 cut(s) 616, 870
NspI RCATGY 2 cut(s) 38, 50
NspV TTCGAA 1 cut(s) 618
PagI TCATGA 1 cut(s) 351
PciI ACATGT 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 172
PctI GAATGC 1 cut(s) 614
PfeI GAWTC 5 cut(s) 274, 398, 440, 797, 821
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 2 cut(s) 184, 562
PscI ACATGT 1 cut(s) 34
PsiI TTATAA 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 1 cut(s) 658
PstI CTGCAG 1 cut(s) 985
PsuI RGATCY 2 cut(s) 219, 1144
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 382, 812
RsaNI GTAC 2 cut(s) 381, 811
RseI CAYNNNNRTG 2 cut(s) 39, 619
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 944, 1133
SatI GCNGC 2 cut(s) 183, 561
Sau3AI GATC 4 cut(s) 70, 219, 369, 1144
Sau96I GGNCC 1 cut(s) 658
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 46, 526
SfaNI GCATC 5 cut(s) 347, 601, 751, 855, 1069
SfcI CTRYAG 2 cut(s) 109, 981
SfuI TTCGAA 1 cut(s) 618
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 2 cut(s) 39, 619
SspMI CTAG 2 cut(s) 572, 825
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 2 cut(s) 961, 1073
TaqI TCGA 2 cut(s) 443, 618
TfiI GAWTC 5 cut(s) 274, 398, 440, 797, 821
Tru1I TTAA 2 cut(s) 944, 1133
Tru9I TTAA 2 cut(s) 944, 1133
TscAI CASTG 1 cut(s) 807
TseI GCWGC 2 cut(s) 182, 560
TspDTI ATGAA 4 cut(s) 218, 984, 1143, 1155
TspRI CASTG 1 cut(s) 807
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 1 cut(s) 117
XceI RCATGY 2 cut(s) 38, 50
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 2 cut(s) 572, 825
Zsp2I ATGCAT 2 cut(s) 616, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.