Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

36948638 .. 36949675

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44301.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCCAACCCCAAACCTAGAGGAGAGGCTTGGAAAAACCCCGAAGATGTATCGTTGTGCATGGCGGTGGTCGCGGTTGGTGAAGATGGTGACAAAGCTACCAGTCAAGAGAAGAAAAATTTATGGGATCGTATATGGGAAGTGTATGAAGCTTGCAAGCCACCCAGTTCCGTTATTAGATCGGGAGGAGGGTGTGAAGCTCGTTGGAGAAAGATTAGGCCGGGTTGCACAAGGTGGCGTGAAGCTCTTACCAAAGCGGAGGCCGCTCACGCAAGTGGTGAAAATGCCACCGACTTGGAAGTGCAAGCTAGGTCGATATATCGTACATTGTCTTTGGGGGAGGAGTTTAAATTTGCGCATTGTTGGTCAATATTAAAGGATACAGAAAAGTTTAGCAAACCTCCGTCTTTGGATGAGGAAATCTCTAGTGGTCCGTCACCTATTGACTTGTCCGGAGAAGATACACCTATTGAGGGAACCCCAAGCCCTTCAAATGTGCATGCACGCCCTCCAGGCCAAAAAGCTCAAAGGGCTGCTAAGAAAAAATGCAAGCAAGATGACACATCTCAACTCTTAGCTCAAATGAAAAGAATTGCGGACCAAGGAGATCGTGATCTCAAACACAGACTACAACTTAGGGAGGAGACTAGACTTGCACAAGAACGTGCGGATGATGCAGCCACAATGGCGGTGGATCCATCAAAATTTCCCGCCCCAATTAGGGCTTATTGGGAAAGGAAGCAAGCTATGGTTATTGAGAGGGAGGAACAAGCTTACAATGCCGGATTACACCAACCACTTGCTTCATCTGAAGGTGAAGATGACCATGTATTAATTGTACTTTGTTGCCTCTATTTTAATTTCATTTTAGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

293

Amino Acids

32.71

Weight (kDa)

5.96

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	115 - 249	9.4e-12	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	357
AccBSI	CCGCTC	1 cut(s)	266
AccII	CGCG	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	452
AciI	CCGC	8 cut(s)	65, 74, 257, 264, 596, 668, 689, 711
AclWI	GGATC	3 cut(s)	135, 689, 702
AcsI	RAATTY	3 cut(s)	118, 350, 704
AcuI	CTGAAG	1 cut(s)	831
AdeI	CACNNNGTG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	325, 840
AfiI	CCNNNNNNNGG	3 cut(s)	473, 720, 721
AgsI	TTSAA	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	9 cut(s)	98, 152, 200, 245, 308, 524, 578, 746, 773
AluI	AGCT	9 cut(s)	98, 152, 200, 245, 308, 524, 578, 746, 773
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	3 cut(s)	135, 689, 702
Aor13HI	TCCGGA	1 cut(s)	452
AoxI	GGCC	3 cut(s)	218, 261, 514
ApeKI	GCWGC	2 cut(s)	533, 677
ApoI	RAATTY	3 cut(s)	118, 350, 704
AseI	ATTAAT	1 cut(s)	833
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	431, 598
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	5 cut(s)	92, 101, 290, 429, 827
AvaII	GGWCC	2 cut(s)	431, 598
BamHI	GGATCC	1 cut(s)	694
BbvI	GCAGC	2 cut(s)	520, 689
BccI	CCATC	2 cut(s)	80, 706
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	4 cut(s)	18, 309, 426, 648
BfuI	GTATCC	1 cut(s)	373
BglI	GCCNNNNNGGC	2 cut(s)	513, 686
BisI	GCNGC	3 cut(s)	264, 534, 678
BlsI	GCNGC	3 cut(s)	265, 535, 679
Bme1390I	CCNGG	2 cut(s)	222, 513
Bme18I	GGWCC	2 cut(s)	431, 598
BmgT120I	GGNCC	2 cut(s)	431, 598
BmiI	GGNNCC	2 cut(s)	478, 696
BmrFI	CCNGG	2 cut(s)	222, 513
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	664
BmuI	ACTGGG	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	601
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 720, 721
Bse1I	ACTGG	2 cut(s)	102, 165
Bse8I	GATNNNNATC	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	2 cut(s)	418, 676
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	3 cut(s)	473, 720, 721
BseNI	ACTGG	2 cut(s)	102, 165
BseRI	GAGGAG	4 cut(s)	36, 201, 356, 656
BseXI	GCAGC	2 cut(s)	520, 689
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	220, 263, 516
BsiSI	CCGG	3 cut(s)	221, 453, 783
BslI	CCNNNNNNNGG	3 cut(s)	473, 720, 721
BsmAI	GTCTC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	220, 263, 516
Bsp13I	TCCGGA	1 cut(s)	452
Bsp143I	GATC	5 cut(s)	127, 179, 607, 613, 694
BspACI	CCGC	8 cut(s)	65, 74, 257, 264, 596, 668, 689, 711
BspANI	GGCC	3 cut(s)	220, 263, 516
BspEI	TCCGGA	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	478, 696
BspPI	GGATC	3 cut(s)	135, 689, 702
BsrBI	CCGCTC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	102, 165
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	5 cut(s)	127, 179, 607, 613, 694
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	513
BstC8I	GCNNGC	7 cut(s)	154, 158, 306, 501, 505, 551, 744
BstDEI	CTNAG	3 cut(s)	537, 574, 635
BstF5I	GGATG	2 cut(s)	418, 676
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	5 cut(s)	130, 182, 610, 616, 697
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	5 cut(s)	127, 179, 607, 613, 694
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 263, 269, 513, 530, 674, 686, 779
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	220, 511
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	520, 689
BstX2I	RGATCY	1 cut(s)	694
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	694
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	220, 263, 516
BtsCI	GGATG	2 cut(s)	418, 676
Cac8I	GCNNGC	7 cut(s)	154, 158, 306, 501, 505, 551, 744
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	431, 598
Csp6I	GTAC	2 cut(s)	324, 839
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	3 cut(s)	61, 500, 827
CviQI	GTAC	2 cut(s)	324, 839
DdeI	CTNAG	3 cut(s)	537, 574, 635
DpnI	GATC	5 cut(s)	129, 181, 609, 615, 696
DpnII	GATC	5 cut(s)	127, 179, 607, 613, 694
DraI	TTTAAA	1 cut(s)	349
DraIII	CACNNNGTG	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	601
Eco47I	GGWCC	2 cut(s)	431, 598
Eco57I	CTGAAG	1 cut(s)	831
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	3 cut(s)	64, 503, 830
FaiI	YATR	9 cut(s)	62, 124, 134, 136, 147, 319, 501, 749, 828
FatI	CATG	3 cut(s)	60, 499, 826
FauI	CCCGC	1 cut(s)	718
Fnu4HI	GCNGC	3 cut(s)	264, 534, 678
FokI	GGATG	2 cut(s)	425, 683
Fsp4HI	GCNGC	3 cut(s)	264, 534, 678
FspBI	CTAG	4 cut(s)	18, 309, 426, 648
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	264, 534, 678
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	220, 263, 516
HapII	CCGG	3 cut(s)	221, 453, 783
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	64, 503, 830
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	150, 771
HpaII	CCGG	3 cut(s)	221, 453, 783
HphI	GGTGA	5 cut(s)	92, 101, 290, 429, 827
Hpy188I	TCNGA	1 cut(s)	811
Hpy188III	TCNNGA	4 cut(s)	107, 183, 453, 611
HpyAV	CCTTC	2 cut(s)	498, 806
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	9 cut(s)	60, 156, 228, 304, 499, 503, 549, 656, 677
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 263, 269, 513, 530, 674, 686, 779
HpyF3I	CTNAG	3 cut(s)	537, 574, 635
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	3 cut(s)	64, 503, 830
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	452
Kzo9I	GATC	5 cut(s)	127, 179, 607, 613, 694
LpnPI	CCDG	7 cut(s)	115, 178, 234, 466, 498, 525, 796
Lsp1109I	GCAGC	2 cut(s)	520, 689
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	4 cut(s)	18, 309, 426, 648
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	2 cut(s)	89, 435
MalI	GATC	5 cut(s)	129, 181, 609, 615, 696
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	5 cut(s)	127, 179, 607, 613, 694
MboII	GAAGA	5 cut(s)	56, 95, 124, 470, 830
MflI	RGATCY	1 cut(s)	694
MluCI	AATT	7 cut(s)	118, 350, 591, 704, 717, 834, 859
MmeI	TCCRAC	2 cut(s)	30, 185
MroI	TCCGGA	1 cut(s)	452
MseI	TTAA	5 cut(s)	348, 374, 833, 858, 877
MslI	CAYNNNNRTG	2 cut(s)	65, 273
MspI	CCGG	3 cut(s)	221, 453, 783
MspR9I	CCNGG	2 cut(s)	222, 513
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	8 cut(s)	71, 263, 269, 513, 530, 674, 686, 779
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	5 cut(s)	127, 179, 607, 613, 694
NlaIII	CATG	3 cut(s)	64, 503, 830
NlaIV	GGNNCC	2 cut(s)	478, 696
NmuCI	GTSAC	2 cut(s)	89, 435
NsbI	TGCGCA	1 cut(s)	357
NspI	RCATGY	1 cut(s)	503
OliI	CACNNNNGTG	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	265, 535, 679
PshBI	ATTAAT	1 cut(s)	833
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	478, 696
PspPI	GGNCC	2 cut(s)	431, 598
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	2 cut(s)	325, 840
RsaNI	GTAC	2 cut(s)	324, 839
RseI	CAYNNNNRTG	2 cut(s)	65, 273
SaqAI	TTAA	5 cut(s)	348, 374, 833, 858, 877
SatI	GCNGC	3 cut(s)	264, 534, 678
Sau3AI	GATC	5 cut(s)	127, 179, 607, 613, 694
Sau96I	GGNCC	2 cut(s)	431, 598
ScrFI	CCNGG	2 cut(s)	222, 513
SfaNI	GCATC	1 cut(s)	664
SinI	GGWCC	2 cut(s)	431, 598
SmiMI	CAYNNNNRTG	2 cut(s)	65, 273
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	7 cut(s)	118, 350, 591, 704, 717, 834, 859
SsiI	CCGC	8 cut(s)	65, 74, 257, 264, 596, 668, 689, 711
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	4 cut(s)	18, 309, 426, 648
StyD4I	CCNGG	2 cut(s)	220, 511
StyI	CCWWGG	1 cut(s)	601
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	1 cut(s)	314
TasI	AATT	7 cut(s)	118, 350, 591, 704, 717, 834, 859
TatI	WGTACW	1 cut(s)	838
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	5 cut(s)	348, 374, 833, 858, 877
Tru9I	TTAA	5 cut(s)	348, 374, 833, 858, 877
TseFI	GTSAC	2 cut(s)	89, 435
TseI	GCWGC	2 cut(s)	533, 677
Tsp45I	GTSAC	2 cut(s)	89, 435
TspDTI	ATGAA	4 cut(s)	162, 599, 795, 853
TspGWI	ACGGA	3 cut(s)	160, 393, 423
VpaK11BI	GGWCC	2 cut(s)	431, 598
VspI	ATTAAT	1 cut(s)	833
XapI	RAATTY	3 cut(s)	118, 350, 704
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XspI	CTAG	4 cut(s)	18, 309, 426, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.