Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

9647943 .. 9648530

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCAATTTACAAGACAAGAACTACACCAAAAAATCAAGCTTTTAAGTTGCATCATGCTTGGAACATCCTCAAGGATTGTTCGAGGTGGGGAACCGATGCGAACCAACAATGTGGAAGATTATTTCATAATGAAGCCCCACCCCCAAATGATGTCAATGAAGGTGTGAATTTTGCCGACAATGAAGGTGTTGAACAAATGACCCCAACTTCTTCTTTTGCAAGGCCCCCAGGTAGATATAAGCAAAAGGAAGCAAAGAGAAAAGGGAAGTCCCAAGATCCGACACGTGCACAATTTGCTAGCGAAATGACAATAATGAACGAAATCCAGTGCCGTCGGCAAGAAGAATCGGCCCAAATGCTTTTGGCCATGAAGGAACAAAGGGATAGGGAGCAAGAAAGGTACGAAACTAATTTGATAATGGAGGACCTCGACAAATACACTCCAGAGAGGAAAAGATACTTACGTGGTAAGCAAAAGGAAATTTTACGAAGGAATGCCACAAGGAGTATATTTCAAGATGATGATTCATCTCAAGACTATCACCCAAGTCCATCACCAAGTCAAGATGGTGAATATCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

196

Amino Acids

22.91

Weight (kDa)

8.36

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	14 - 162	4.6e-12	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	169, 483
AcvI	CACGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	194, 518
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw21I	GWGCWC	1 cut(s)	292
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	3 cut(s)	224, 351, 366
ApaLI	GTGCAC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	169, 483
AspS9I	GGNCC	3 cut(s)	225, 352, 427
AsuHPI	GGTGA	3 cut(s)	536, 549, 584
AsuNHI	GCTAGC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	292
BaeI	ACNNNNGTAYC	2 cut(s)	451, 484
BalI	TGGCCA	1 cut(s)	368
BbrPI	CACGTG	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	292
BccI	CCATC	2 cut(s)	562, 563
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	3 cut(s)	225, 352, 427
BmiI	GGNNCC	2 cut(s)	94, 227
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	61, 88
BmtI	GCTAGC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	56, 519
BsaAI	YACGTR	2 cut(s)	287, 467
BsaJI	CCNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	328
BseSI	GKGCMC	1 cut(s)	292
BshFI	GGCC	3 cut(s)	226, 353, 368
BsiHKAI	GWGCWC	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	3 cut(s)	226, 353, 368
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	277
BspANI	GGCC	3 cut(s)	226, 353, 368
BspLI	GGNNCC	2 cut(s)	94, 227
BspOI	GCTAGC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBAI	YACGTR	2 cut(s)	287, 467
BstC8I	GCNNGC	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	226, 353, 368
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	301
Cfr13I	GGNCC	3 cut(s)	225, 352, 427
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	56, 370
CviJI	RGCY	5 cut(s)	41, 137, 226, 353, 368
CviKI_1	RGCY	5 cut(s)	41, 137, 226, 353, 368
CviQI	GTAC	1 cut(s)	403
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	427
Eco72I	CACGTG	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	225, 427
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	2 cut(s)	59, 373
FaiI	YATR	5 cut(s)	57, 129, 240, 371, 512
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	2 cut(s)	55, 369
FokI	GGATG	1 cut(s)	53
FspBI	CTAG	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	226, 353, 368
Hin1II	CATG	2 cut(s)	59, 373
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	347, 527
HphI	GGTGA	3 cut(s)	536, 549, 584
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	4 cut(s)	446, 518, 536, 566
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	4 cut(s)	155, 179, 367, 486
HpyCH4IV	ACGT	2 cut(s)	286, 466
HpyCH4V	TGCA	3 cut(s)	52, 221, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpySE526I	ACGT	2 cut(s)	286, 466
Hsp92II	CATG	2 cut(s)	59, 373
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	4 cut(s)	216, 243, 341, 459
LweI	GCATC	2 cut(s)	61, 88
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	2 cut(s)	286, 466
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	129, 204, 356
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	292
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	5 cut(s)	6, 169, 293, 412, 483
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	78, 80, 418, 440, 444
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	2 cut(s)	45, 586
Msp20I	TGGCCA	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	1 cut(s)	277
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	59, 373
NlaIV	GGNNCC	2 cut(s)	94, 227
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	347, 527
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	2 cut(s)	287, 467
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	94, 227
PspPI	GGNCC	3 cut(s)	225, 352, 427
PspPPI	RGGWCCY	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	45, 586
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	3 cut(s)	225, 352, 427
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	9 cut(s)	43, 89, 166, 190, 235, 289, 404, 432, 469
SfaNI	GCATC	2 cut(s)	61, 88
SinI	GGWCC	1 cut(s)	427
SmlI	CTYRAG	2 cut(s)	71, 534
SmoI	CTYRAG	2 cut(s)	71, 534
Sse9I	AATT	5 cut(s)	6, 169, 293, 412, 483
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	229
TaiI	ACGT	2 cut(s)	289, 469
TaqI	TCGA	2 cut(s)	83, 432
TasI	AATT	5 cut(s)	6, 169, 293, 412, 483
TfiI	GAWTC	2 cut(s)	347, 527
Tru1I	TTAA	2 cut(s)	45, 586
Tru9I	TTAA	2 cut(s)	45, 586
TscAI	CASTG	1 cut(s)	335
TspDTI	ATGAA	7 cut(s)	116, 147, 174, 198, 332, 386, 519
TspRI	CASTG	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	2 cut(s)	169, 483
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.