Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001651.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

79501 .. 83272

Gene Structure 3772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001651.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgacttgccccaagaatgactgggcaatagacctgggtaatccattactcaatgacatcgccgatgctttcttgacgtacaagcgcaaccatcgggttaccaaagttgctgcagtcctgcagaggatacttactatgccgtcaaaagggagtcgtgtggcggaggagtacaatgctcacaaacctgccggttgcatggagagaacacattctagttgccacgctcgttggaagagaataagtccggcatgtatgaagtggcgccaagctcttaacaaggtcgaacactttcaacgaagaagcggcgaaaatatggaggacgagctcatgaatgttaaatcaacgtactacgactcggaaggttgcgattttgtgtttgagcattgttggcaatacttgaaaaatacggaaaagtttgggaaaacgccatcaatggaaagcacccactttagtgttcctaatcatgtcaacttggatgacgatgaaacaaccactactgaggatgagcttctgtcatcaagaaaggcacgtcctcaaggacagaaagtacagaagctagctaagaaaaaaggcaataagcaggatgcggatggcctacgagttcaaatgcagaaatgttatgaacaaaccgaacgcgagcaccaacaaaggcaaagacagtttgaggaaggtcaaataattgagcaacgcgctgaggatgctcgcacgatgcagggggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggctgaaacttcaagcgtcccggaacaatctcaatatcctacaccccctgaaggagataacacaagattgaccacttatgatccacttggcgagacatcttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

298

Amino Acids

34.73

Weight (kDa)

7.11

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	261
AccII	CGCG	2 cut(s)	636, 690
AciI	CCGC	3 cut(s)	161, 303, 587
AclWI	GGATC	3 cut(s)	713, 726, 863
AcuI	CTGAAG	1 cut(s)	858
AcyI	GRCGYC	1 cut(s)	262
AfaI	GTAC	4 cut(s)	80, 170, 347, 549
AfiI	CCNNNNNNNGG	2 cut(s)	146, 839
AgsI	TTSAA	4 cut(s)	293, 400, 605, 801
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	450
AluBI	AGCT	5 cut(s)	269, 325, 508, 556, 560
AluI	AGCT	5 cut(s)	269, 325, 508, 556, 560
Alw21I	GWGCWC	2 cut(s)	327, 642
Alw26I	GTCTC	1 cut(s)	875
AlwI	GGATC	3 cut(s)	713, 726, 863
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	1 cut(s)	110
Asp700I	GAANNNNTTC	2 cut(s)	208, 288
AspLEI	GCGC	3 cut(s)	87, 264, 692
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	1 cut(s)	724
AsuNHI	GCTAGC	1 cut(s)	556
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	327, 642
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	4 cut(s)	99, 436, 584, 730
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	809
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	2 cut(s)	213, 557
BfmI	CTRYAG	2 cut(s)	111, 119
BfoI	RGCGCY	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	120
BisI	GCNGC	2 cut(s)	111, 304
BlsI	GCNGC	2 cut(s)	112, 305
Bme1390I	CCNGG	2 cut(s)	35, 809
BmgBI	CACGTC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	263, 720
BmrFI	CCNGG	2 cut(s)	35, 809
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	4 cut(s)	55, 574, 688, 699
BmtI	GCTAGC	1 cut(s)	560
BmuI	ACTGGG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	809
BsaHI	GRCGYC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 839
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	6 cut(s)	481, 508, 589, 595, 703, 897
BseLI	CCNNNNNNNGG	2 cut(s)	146, 839
BseMII	CTCAG	2 cut(s)	489, 684
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	179, 760
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	2 cut(s)	636, 690
BshFI	GGCC	1 cut(s)	594
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	2 cut(s)	327, 642
BsiSI	CCGG	3 cut(s)	189, 245, 809
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	2 cut(s)	146, 839
BsmAI	GTCTC	1 cut(s)	875
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	327, 642
Bsp143I	GATC	2 cut(s)	718, 868
BspACI	CCGC	3 cut(s)	161, 303, 587
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	2 cut(s)	490, 685
BspFNI	CGCG	2 cut(s)	636, 690
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	263, 720
BspMAI	CTGCAG	2 cut(s)	115, 123
BspMI	ACCTGC	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	3 cut(s)	713, 726, 863
BspT107I	GGYRCC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	2 cut(s)	718, 868
BssNI	GRCGYC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	558, 638, 703
BstDEI	CTNAG	3 cut(s)	498, 561, 693
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	6 cut(s)	481, 508, 589, 595, 703, 897
BstFNI	CGCG	2 cut(s)	636, 690
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	3 cut(s)	87, 264, 692
BstKTI	GATC	2 cut(s)	721, 871
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	2 cut(s)	718, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 698
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	33, 807
BstSFI	CTRYAG	2 cut(s)	111, 119
BstUI	CGCG	2 cut(s)	636, 690
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	594
BtgZI	GCGATG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	6 cut(s)	481, 508, 589, 595, 703, 897
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	3 cut(s)	558, 638, 703
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	3 cut(s)	87, 264, 692
Cfr10I	RCCGGY	1 cut(s)	188
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	4 cut(s)	79, 169, 346, 548
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	4 cut(s)	196, 249, 328, 464
CviJI	RGCY	7 cut(s)	269, 325, 508, 556, 560, 594, 791
CviKI_1	RGCY	7 cut(s)	269, 325, 508, 556, 560, 594, 791
CviQI	GTAC	4 cut(s)	79, 169, 346, 548
DdeI	CTNAG	3 cut(s)	498, 561, 693
DinI	GGCGCC	1 cut(s)	263
DpnI	GATC	2 cut(s)	720, 870
DpnII	GATC	2 cut(s)	718, 868
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	858
Eco91I	GGTNACC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	263
EheI	GGCGCC	1 cut(s)	263
FaeI	CATG	4 cut(s)	199, 252, 331, 467
FaiI	YATR	9 cut(s)	137, 197, 250, 254, 314, 329, 465, 621, 867
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	4 cut(s)	195, 248, 327, 463
Fnu4HI	GCNGC	2 cut(s)	111, 304
FokI	GGATG	5 cut(s)	488, 515, 596, 602, 710
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	111, 304
FspBI	CTAG	2 cut(s)	213, 557
GlaI	GCGC	3 cut(s)	86, 263, 691
GluI	GCNGC	2 cut(s)	111, 304
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	3 cut(s)	189, 245, 809
HgaI	GACGC	1 cut(s)	793
HhaI	GCGC	3 cut(s)	87, 264, 692
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	199, 252, 331, 467
Hin6I	GCGC	3 cut(s)	85, 262, 690
HinP1I	GCGC	3 cut(s)	85, 262, 690
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	2 cut(s)	151, 353
HpaII	CCGG	3 cut(s)	189, 245, 809
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	3 cut(s)	73, 328, 519
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	3 cut(s)	353, 662, 833
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4IV	ACGT	3 cut(s)	77, 344, 529
HpyCH4V	TGCA	5 cut(s)	113, 121, 195, 610, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 698
HpyF3I	CTNAG	3 cut(s)	498, 561, 693
HpySE526I	ACGT	3 cut(s)	77, 344, 529
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	4 cut(s)	199, 252, 331, 467
HspAI	GCGC	3 cut(s)	85, 262, 690
KasI	GGCGCC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	718, 868
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	4 cut(s)	55, 574, 688, 699
MaeI	CTAG	2 cut(s)	213, 557
MaeII	ACGT	3 cut(s)	77, 344, 529
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	720, 870
MboI	GATC	2 cut(s)	718, 868
MboII	GAAGA	2 cut(s)	244, 309
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	327, 642
MluCI	AATT	3 cut(s)	678, 726, 777
Mly113I	GGCGCC	1 cut(s)	262
MlyI	GAGTC	2 cut(s)	160, 347
MmeI	TCCRAC	1 cut(s)	209
MroXI	GAANNNNTTC	2 cut(s)	208, 288
MseI	TTAA	2 cut(s)	273, 336
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	3 cut(s)	189, 245, 809
MspR9I	CCNGG	2 cut(s)	35, 809
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	2 cut(s)	636, 690
MwoI	GCNNNNNNNGC	2 cut(s)	388, 698
NarI	GGCGCC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	2 cut(s)	718, 868
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	4 cut(s)	199, 252, 331, 467
NlaIV	GGNNCC	2 cut(s)	263, 720
NspI	RCATGY	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	450
PagI	TCATGA	1 cut(s)	327
PdmI	GAANNNNTTC	2 cut(s)	208, 288
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	2 cut(s)	112, 305
PleI	GAGTC	2 cut(s)	159, 347
PluTI	GGCGCC	1 cut(s)	265
PpsI	GAGTC	2 cut(s)	159, 347
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	33
PspEI	GGTNACC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	263, 720
PstI	CTGCAG	2 cut(s)	115, 123
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	4 cut(s)	80, 170, 347, 549
RsaNI	GTAC	4 cut(s)	79, 169, 346, 548
RseI	CAYNNNNRTG	1 cut(s)	450
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	273, 336
SatI	GCNGC	2 cut(s)	111, 304
Sau3AI	GATC	2 cut(s)	718, 868
SchI	GAGTC	2 cut(s)	160, 347
ScrFI	CCNGG	2 cut(s)	35, 809
SduI	GDGCHC	2 cut(s)	327, 642
SfaNI	GCATC	4 cut(s)	55, 574, 688, 699
SfcI	CTRYAG	2 cut(s)	111, 119
SfoI	GGCGCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
Sse9I	AATT	3 cut(s)	678, 726, 777
SsiI	CCGC	3 cut(s)	161, 303, 587
SspDI	GGCGCC	1 cut(s)	261
SspMI	CTAG	2 cut(s)	213, 557
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	33, 807
TaaI	ACNGT	1 cut(s)	660
TaiI	ACGT	3 cut(s)	80, 347, 532
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	678, 726, 777
TatI	WGTACW	2 cut(s)	168, 547
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	2 cut(s)	273, 336
Tru9I	TTAA	2 cut(s)	273, 336
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	269, 344, 498, 636
TspGWI	ACGGA	1 cut(s)	422
XceI	RCATGY	1 cut(s)	252
XmnI	GAANNNNTTC	2 cut(s)	208, 288
XspI	CTAG	2 cut(s)	213, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.