Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003317.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

42426 .. 43441

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003317.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggctccaagaggggattcatggagacacaatgaagaagttattctttgccgagcttggatcaccgttgggggtgatggtgctgtcggaaaagatcaaacgtcggagttattatggagtcgtgttttggaggagtacaatgctcacaaaccggcatgttgcatgctcatgaacgttaaatcaacgtactacgacacaaatggttgtgattttttgtttgagcattgttggagagatttgaaaaatacggaaaagtttgggaaaattccatcaatggaaaacaccccctttagtgttcctaatcatgttgacttggatgacgatggaacacccaatactgatgatgagccgacttcatcaaggaaggcacgtcctcaaggacagaaagctcaaaagctagctaagaaaaaaggcaataagcaggatgcggatggcctacgagttcaaatgcagaaatgttatgaacaaacagagcgcgagtaccaacaaaggcaaagacagtttgaggaaggtcaactaattgaggaacgcgctgaggatgctcgcacgatgcaggtgaatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggcagaaacttcaagcatcccggaacaatctcaagatcctacaccctctggaggagacaacacagacttggccagttatgattcacttcaagagacatcttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

245

Amino Acids

28.24

Weight (kDa)

5.12

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	544
Acc36I	ACCTGC	1 cut(s)	544
AccII	CGCG	2 cut(s)	477, 531
AciI	CCGC	1 cut(s)	428
AclI	AACGTT	1 cut(s)	174
AclWI	GGATC	2 cut(s)	68, 659
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	3 cut(s)	137, 188, 482
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	241, 446, 642, 719
AjiI	CACGTC	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	4 cut(s)	56, 389, 397, 401
AluI	AGCT	4 cut(s)	56, 389, 397, 401
Alw26I	GTCTC	3 cut(s)	19, 678, 716
AlwI	GGATC	2 cut(s)	68, 659
AoxI	GGCC	2 cut(s)	433, 699
ApoI	RAATTY	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	477, 533
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	4 cut(s)	55, 86, 565, 568
AsuNHI	GCTAGC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	701
BbvCI	CCTCAGC	1 cut(s)	534
BccI	CCATC	5 cut(s)	71, 277, 317, 425, 571
BcnI	CCSGG	1 cut(s)	650
BcoDI	GTCTC	3 cut(s)	19, 678, 716
BfaI	CTAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	650
BmgBI	CACGTC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	650
BmsI	GCATC	4 cut(s)	415, 529, 540, 654
BmtI	GCTAGC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	360, 645
BpuMI	CCSGG	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	702
BseGI	GGATG	6 cut(s)	322, 430, 436, 544, 645, 738
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	702
BseRI	GAGGAG	3 cut(s)	146, 601, 696
Bsh1236I	CGCG	2 cut(s)	477, 531
BshFI	GGCC	2 cut(s)	435, 701
BsiSI	CCGG	2 cut(s)	152, 650
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	3 cut(s)	19, 678, 716
BsnI	GGCC	2 cut(s)	435, 701
Bsp143I	GATC	3 cut(s)	60, 94, 664
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	2 cut(s)	435, 701
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	2 cut(s)	477, 531
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	68, 659
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	3 cut(s)	60, 94, 664
Bst4CI	ACNGT	2 cut(s)	67, 501
BstC8I	GCNNGC	3 cut(s)	164, 399, 544
BstDEI	CTNAG	2 cut(s)	402, 534
BstF5I	GGATG	6 cut(s)	322, 430, 436, 544, 645, 738
BstFNI	CGCG	2 cut(s)	477, 531
BstHHI	GCGC	2 cut(s)	477, 533
BstKTI	GATC	3 cut(s)	63, 97, 667
BstMAI	GTCTC	3 cut(s)	19, 678, 716
BstMBI	GATC	3 cut(s)	60, 94, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNSI	RCATGY	2 cut(s)	159, 166
BstSCI	CCNGG	1 cut(s)	648
BstUI	CGCG	2 cut(s)	477, 531
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	435, 701
BtrI	CACGTC	1 cut(s)	371
BtsCI	GGATG	6 cut(s)	322, 430, 436, 544, 645, 738
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	3 cut(s)	164, 399, 544
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	2 cut(s)	477, 533
Cfr10I	RCCGGY	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	136, 187, 481
CviAII	CATG	5 cut(s)	21, 156, 163, 169, 305
CviJI	RGCY	8 cut(s)	5, 56, 349, 389, 397, 401, 435, 701
CviKI_1	RGCY	8 cut(s)	5, 56, 349, 389, 397, 401, 435, 701
CviQI	GTAC	3 cut(s)	136, 187, 481
DdeI	CTNAG	2 cut(s)	402, 534
DpnI	GATC	3 cut(s)	62, 96, 666
DpnII	GATC	3 cut(s)	60, 94, 664
EaeI	YGGCCR	1 cut(s)	699
FaeI	CATG	5 cut(s)	24, 159, 166, 172, 308
FaiI	YATR	8 cut(s)	22, 115, 157, 164, 170, 306, 462, 708
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	5 cut(s)	20, 155, 162, 168, 304
FokI	GGATG	5 cut(s)	329, 437, 443, 551, 632
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	2 cut(s)	476, 532
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	2 cut(s)	435, 701
HapII	CCGG	2 cut(s)	152, 650
HhaI	GCGC	2 cut(s)	477, 533
Hin1II	CATG	5 cut(s)	24, 159, 166, 172, 308
Hin6I	GCGC	2 cut(s)	475, 531
HinP1I	GCGC	2 cut(s)	475, 531
HincII	GTYRAC	2 cut(s)	310, 515
HindII	GTYRAC	2 cut(s)	310, 515
HinfI	GANTC	4 cut(s)	17, 118, 559, 710
HpaII	CCGG	2 cut(s)	152, 650
HphI	GGTGA	4 cut(s)	55, 86, 565, 568
Hpy166II	GTNNAC	2 cut(s)	310, 515
Hpy188I	TCNGA	2 cut(s)	89, 106
Hpy188III	TCNNGA	4 cut(s)	169, 662, 678, 719
Hpy8I	GTNNAC	2 cut(s)	310, 515
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	358, 503
HpyCH4III	ACNGT	2 cut(s)	67, 501
HpyCH4IV	ACGT	4 cut(s)	101, 174, 185, 370
HpyCH4V	TGCA	3 cut(s)	162, 451, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	402, 534
HpySE526I	ACGT	4 cut(s)	101, 174, 185, 370
Hsp92II	CATG	5 cut(s)	24, 159, 166, 172, 308
HspAI	GCGC	2 cut(s)	475, 531
Kzo9I	GATC	3 cut(s)	60, 94, 664
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	165, 407, 539, 663, 663, 715
LweI	GCATC	4 cut(s)	415, 529, 540, 654
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	4 cut(s)	101, 174, 185, 370
MalI	GATC	3 cut(s)	62, 96, 666
MboI	GATC	3 cut(s)	60, 94, 664
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	701
MluCI	AATT	4 cut(s)	264, 519, 567, 618
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	3 cut(s)	67, 84, 209
Mox20I	TGGCCA	1 cut(s)	701
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	701
MspI	CCGG	2 cut(s)	152, 650
MspR9I	CCNGG	1 cut(s)	650
MvnI	CGCG	2 cut(s)	477, 531
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	3 cut(s)	60, 94, 664
NheI	GCTAGC	1 cut(s)	397
NlaIII	CATG	5 cut(s)	24, 159, 166, 172, 308
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	77
NspI	RCATGY	2 cut(s)	159, 166
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	17, 559, 710
PfoI	TCCNGGA	1 cut(s)	648
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp1406I	AACGTT	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	319, 351
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	3 cut(s)	137, 188, 482
RsaNI	GTAC	3 cut(s)	136, 187, 481
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	60, 94, 664
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	650
SfaNI	GCATC	4 cut(s)	415, 529, 540, 654
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	375, 660
SmoI	CTYRAG	2 cut(s)	375, 660
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	4 cut(s)	264, 519, 567, 618
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	67, 501
TaiI	ACGT	4 cut(s)	104, 177, 188, 373
TasI	AATT	4 cut(s)	264, 519, 567, 618
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	17, 559, 710
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TspDTI	ATGAA	5 cut(s)	9, 48, 185, 345, 477
TspGWI	ACGGA	1 cut(s)	263
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	2 cut(s)	159, 166
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.