Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

15161133 .. 15162090

Gene Structure 958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGTGGTTGCGGTTGGTGAAGATGGTGACAAAGCTACCGGTCAAGAGAAGAAAAAATTATGGGATCATATATGGGAAGTGTATGAAGCTTGCAAGCCACCCTGTTCCGTTATTAGATCGGGAGGAGGGTGTGAAGCTCGTTGGAGAAAGATTAGACCGGGTTGCACAAGGTGGCGTGAAGCTCTTACCAAAGTGGAGGCCGCTCACGCAAGTGGTGAAAATGCCACCGACTTGGAAGTGCAAGCTAGGTCAATATATTATTCATTGTCTTTGGGGGAGGAGTTTAAATTTGCGCATTGTTGGCCAATATTGAAGGATACAGAAAAGTTTAGCAAACCTCCGTCCTTGGATGATGAAATCTCTAGTGGTCTGTCACCTATTGACTTGTCCGGAGAAGATACACCCATTGAGGGAACCCTAAGCCCTTCAAATGTGCATGCACGCCCTCCAGGCCAAAAAGCTCAAAGGGCTGCTAAGAAAAGATGCAAACAAGATAACACATCTCAACTCTTAGCTCAAATGAAAAGAATTGCGGACCAAGGATATCGCGATCTCAAACACAGACTACAACTTAGGGAGGAGACTAGACTTGCACAAGAACGTGCGGATGATGCAGCCACAATGGCGGTGGATCCATCAAAATTTCCCACCCCAATTAGGGCTTATTGGGAAAGGAGGCAAGCTATGGTTATTGAGAGGGAGGAACAAGCTTACAATATCGGGTTACACCAACCACTTGCTTCATCTGAAGGTGAAGATGACCCAATGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

259

Amino Acids

29.02

Weight (kDa)

6.13

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	95 - 229	9.8e-10	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	206
AccII	CGCG	1 cut(s)	552
AccIII	TCCGGA	1 cut(s)	392
AciI	CCGC	6 cut(s)	5, 14, 204, 536, 608, 629
AclWI	GGATC	3 cut(s)	75, 629, 642
AcoI	YGGCCR	1 cut(s)	305
AcsI	RAATTY	2 cut(s)	290, 644
AcuI	CTGAAG	1 cut(s)	771
AdeI	CACNNNGTG	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	413, 660, 661
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	316, 432
AjnI	CCWGG	1 cut(s)	451
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	9 cut(s)	38, 92, 140, 185, 248, 464, 518, 686, 713
AluI	AGCT	9 cut(s)	38, 92, 140, 185, 248, 464, 518, 686, 713
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	3 cut(s)	75, 629, 642
Aor13HI	TCCGGA	1 cut(s)	392
AoxI	GGCC	3 cut(s)	201, 305, 454
ApeKI	GCWGC	2 cut(s)	473, 617
ApoI	RAATTY	2 cut(s)	290, 644
AsiGI	ACCGGT	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	5 cut(s)	32, 41, 230, 369, 767
AvaII	GGWCC	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	460, 629
BccI	CCATC	2 cut(s)	20, 646
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	3 cut(s)	249, 366, 588
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	2 cut(s)	453, 626
BisI	GCNGC	3 cut(s)	204, 474, 618
BlsI	GCNGC	3 cut(s)	205, 475, 619
Bme1390I	CCNGG	2 cut(s)	162, 453
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	418, 636
BmrFI	CCNGG	2 cut(s)	162, 453
BmsI	GCATC	2 cut(s)	476, 604
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	348, 541
BsaWI	WCCGGW	2 cut(s)	41, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 660, 661
Bse118I	RCCGGY	1 cut(s)	41
BseAI	TCCGGA	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	348, 541
BseGI	GGATG	2 cut(s)	358, 616
BseLI	CCNNNNNNNGG	3 cut(s)	413, 660, 661
BseRI	GAGGAG	3 cut(s)	141, 296, 596
BseXI	GCAGC	2 cut(s)	460, 629
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	3 cut(s)	203, 307, 456
BshTI	ACCGGT	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	42, 161, 393
BslI	CCNNNNNNNGG	3 cut(s)	413, 660, 661
BsmAI	GTCTC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	203, 307, 456
Bsp13I	TCCGGA	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	67, 119, 553, 634
Bsp68I	TCGCGA	1 cut(s)	552
BspACI	CCGC	6 cut(s)	5, 14, 204, 536, 608, 629
BspANI	GGCC	3 cut(s)	203, 307, 456
BspEI	TCCGGA	1 cut(s)	392
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	418, 636
BspPI	GGATC	3 cut(s)	75, 629, 642
BsrBI	CCGCTC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	348, 541
BssMI	GATC	4 cut(s)	67, 119, 553, 634
BssT1I	CCWWGG	2 cut(s)	348, 541
Bst2UI	CCWGG	1 cut(s)	453
BstC8I	GCNNGC	6 cut(s)	94, 98, 246, 441, 445, 684
BstDEI	CTNAG	4 cut(s)	422, 477, 514, 575
BstF5I	GGATG	2 cut(s)	358, 616
BstFNI	CGCG	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	4 cut(s)	70, 122, 556, 637
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	4 cut(s)	67, 119, 553, 634
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 209, 304, 453, 470, 614, 626
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	160, 451
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	460, 629
BstX2I	RGATCY	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	203, 307, 456
BtsCI	GGATG	2 cut(s)	358, 616
BtuMI	TCGCGA	1 cut(s)	552
Cac8I	GCNNGC	6 cut(s)	94, 98, 246, 441, 445, 684
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	538
CspAI	ACCGGT	1 cut(s)	41
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviAII	CATG	1 cut(s)	440
DdeI	CTNAG	4 cut(s)	422, 477, 514, 575
DpnI	GATC	4 cut(s)	69, 121, 555, 636
DpnII	GATC	4 cut(s)	67, 119, 553, 634
DraI	TTTAAA	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	348, 541
Eco32I	GATATC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	771
EcoRII	CCWGG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	548
EcoT14I	CCWWGG	2 cut(s)	348, 541
ErhI	CCWWGG	2 cut(s)	348, 541
FaeI	CATG	1 cut(s)	443
FaiI	YATR	8 cut(s)	64, 72, 74, 76, 87, 259, 441, 689
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	204, 474, 618
FokI	GGATG	2 cut(s)	365, 623
Fsp4HI	GCNGC	3 cut(s)	204, 474, 618
FspBI	CTAG	3 cut(s)	249, 366, 588
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	204, 474, 618
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	203, 307, 456
HapII	CCGG	3 cut(s)	42, 161, 393
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	2 cut(s)	90, 711
HpaII	CCGG	3 cut(s)	42, 161, 393
HphI	GGTGA	5 cut(s)	32, 41, 230, 369, 767
Hpy188I	TCNGA	1 cut(s)	751
Hpy188III	TCNNGA	4 cut(s)	47, 123, 393, 551
HpyAV	CCTTC	3 cut(s)	310, 438, 746
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	8 cut(s)	96, 168, 244, 439, 443, 489, 596, 617
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 209, 304, 453, 470, 614, 626
HpyF3I	CTNAG	4 cut(s)	422, 477, 514, 575
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	1 cut(s)	296
Kpn2I	TCCGGA	1 cut(s)	392
Kzo9I	GATC	4 cut(s)	67, 119, 553, 634
LpnPI	CCDG	6 cut(s)	55, 118, 174, 406, 438, 465
Lsp1109I	GCAGC	2 cut(s)	460, 629
LweI	GCATC	2 cut(s)	476, 604
MaeI	CTAG	3 cut(s)	249, 366, 588
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	29, 375, 726
MalI	GATC	4 cut(s)	69, 121, 555, 636
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	4 cut(s)	67, 119, 553, 634
MboII	GAAGA	4 cut(s)	35, 64, 410, 770
MflI	RGATCY	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	5 cut(s)	59, 290, 531, 644, 657
MluNI	TGGCCA	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	125
Mox20I	TGGCCA	1 cut(s)	307
MroI	TCCGGA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	2 cut(s)	288, 775
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	307
MspI	CCGG	3 cut(s)	42, 161, 393
MspR9I	CCNGG	2 cut(s)	162, 453
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	7 cut(s)	11, 209, 304, 453, 470, 614, 626
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	67, 119, 553, 634
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	2 cut(s)	418, 636
NmuCI	GTSAC	2 cut(s)	29, 375
NruI	TCGCGA	1 cut(s)	552
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	443
OliI	CACNNNNGTG	1 cut(s)	213
PaeI	GCATGC	1 cut(s)	443
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	205, 475, 619
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	418, 636
PspPI	GGNCC	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	634
RruI	TCGCGA	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	288, 775
SatI	GCNGC	3 cut(s)	204, 474, 618
Sau3AI	GATC	4 cut(s)	67, 119, 553, 634
Sau96I	GGNCC	1 cut(s)	538
ScrFI	CCNGG	2 cut(s)	162, 453
SfaNI	GCATC	2 cut(s)	476, 604
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	5 cut(s)	59, 290, 531, 644, 657
SsiI	CCGC	6 cut(s)	5, 14, 204, 536, 608, 629
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	3 cut(s)	249, 366, 588
StyD4I	CCNGG	2 cut(s)	160, 451
StyI	CCWWGG	2 cut(s)	348, 541
TaiI	ACGT	1 cut(s)	607
TasI	AATT	5 cut(s)	59, 290, 531, 644, 657
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	288, 775
Tru9I	TTAA	2 cut(s)	288, 775
TseFI	GTSAC	2 cut(s)	29, 375
TseI	GCWGC	2 cut(s)	473, 617
Tsp45I	GTSAC	2 cut(s)	29, 375
TspDTI	ATGAA	5 cut(s)	102, 255, 372, 539, 735
TspGWI	ACGGA	2 cut(s)	100, 333
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	2 cut(s)	290, 644
XceI	RCATGY	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XspI	CTAG	3 cut(s)	249, 366, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.