Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003731.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

19335 .. 20018

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003731.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggctccaagaggagattcttggaggcacaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatggttgcgtcggaaaagatcaaaagtcggatgtggcggaggagtacaatgctcacaaaccggccggttgcatggatagaacacattctagttgccacgctcgctggaagaaaataagtccggcatgtatgaagtggcgccaagctcttaacaaggtcgaacactttcaacgaagaagtggcgaaaatatggaggacgagctcatgaatgttaaatcaatgtactacgactcggaaggttgtgattttttgtttgaccattgttggcaatacttgaaaagtatggaaaagtttgggaaaacgccatcaatggataacacctactttagtgttcctaatcatgtcaacttggatgccgatggaacacccactactgaggatgagcttccgtcatcaagaaaggcacgtcctcaaggacagaaagcacagaagctagctaagaaaaaaaagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

176

Amino Acids

20.19

Weight (kDa)

8.12

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	2 cut(s)	122, 299
AgsI	TTSAA	2 cut(s)	245, 352
AjiI	CACGTC	1 cut(s)	482
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	6 cut(s)	56, 221, 277, 460, 508, 512
AluI	AGCT	6 cut(s)	56, 221, 277, 460, 508, 512
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	138
Asp700I	GAANNNNTTC	3 cut(s)	42, 160, 240
AspLEI	GCGC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	55, 86
AsuNHI	GCTAGC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	3 cut(s)	71, 388, 428
BfaI	CTAG	2 cut(s)	165, 509
BfoI	RGCGCY	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	6, 215
BmsI	GCATC	1 cut(s)	418
BmtI	GCTAGC	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	214
Bse118I	RCCGGY	2 cut(s)	136, 140
BseGI	GGATG	3 cut(s)	112, 433, 460
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	2 cut(s)	27, 131
BseX3I	CGGCCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	137, 141, 197
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	60, 94
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	6, 215
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	136, 140
BssAI	RCCGGY	2 cut(s)	136, 140
BssMI	GATC	2 cut(s)	60, 94
BssNI	GRCGYC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	178, 510
BstDEI	CTNAG	2 cut(s)	450, 513
BstF5I	GGATG	3 cut(s)	112, 433, 460
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	63, 97
BstMBI	GATC	2 cut(s)	60, 94
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	3 cut(s)	112, 433, 460
Cac8I	GCNNGC	2 cut(s)	178, 510
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	2 cut(s)	136, 140
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	121, 298
CviAII	CATG	4 cut(s)	148, 201, 280, 416
CviJI	RGCY	8 cut(s)	5, 56, 140, 221, 277, 460, 508, 512
CviKI_1	RGCY	8 cut(s)	5, 56, 140, 221, 277, 460, 508, 512
CviQI	GTAC	2 cut(s)	121, 298
DdeI	CTNAG	2 cut(s)	450, 513
DinI	GGCGCC	1 cut(s)	215
DpnI	GATC	2 cut(s)	62, 96
DpnII	GATC	2 cut(s)	60, 94
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	277
EclXI	CGGCCG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	215
EheI	GGCGCC	1 cut(s)	215
FaeI	CATG	4 cut(s)	151, 204, 283, 419
FaiI	YATR	7 cut(s)	149, 202, 206, 266, 281, 359, 417
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	4 cut(s)	147, 200, 279, 415
FokI	GGATG	3 cut(s)	119, 440, 467
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	165, 509
GlaI	GCGC	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	137, 141, 197
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	151, 204, 283, 419
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	17, 305
HpaII	CCGG	3 cut(s)	137, 141, 197
HphI	GGTGA	2 cut(s)	55, 86
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	3 cut(s)	89, 106, 310
Hpy188III	TCNNGA	2 cut(s)	280, 471
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	450, 513
HpySE526I	ACGT	1 cut(s)	481
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	4 cut(s)	151, 204, 283, 419
HspAI	GCGC	1 cut(s)	214
KasI	GGCGCC	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	60, 94
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	150, 154, 166, 210
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	165, 509
MaeII	ACGT	1 cut(s)	481
MalI	GATC	2 cut(s)	62, 96
MboI	GATC	2 cut(s)	60, 94
MboII	GAAGA	3 cut(s)	47, 196, 261
MhlI	GDGCHC	1 cut(s)	279
Mly113I	GGCGCC	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	67, 84
MnlI	CCTC	6 cut(s)	5, 18, 109, 262, 445, 495
MroXI	GAANNNNTTC	3 cut(s)	42, 160, 240
MseI	TTAA	2 cut(s)	225, 288
MspI	CCGG	3 cut(s)	137, 141, 197
MwoI	GCNNNNNNNGC	1 cut(s)	177
NarI	GGCGCC	1 cut(s)	214
NdeII	GATC	2 cut(s)	60, 94
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	4 cut(s)	151, 204, 283, 419
NlaIV	GGNNCC	2 cut(s)	6, 215
NspI	RCATGY	1 cut(s)	204
PagI	TCATGA	1 cut(s)	279
PdmI	GAANNNNTTC	3 cut(s)	42, 160, 240
PfeI	GAWTC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	299
PluTI	GGCGCC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	6, 215
PsrI	GAACNNNNNNTAC	2 cut(s)	430, 462
RsaI	GTAC	2 cut(s)	122, 299
RsaNI	GTAC	2 cut(s)	121, 298
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	225, 288
Sau3AI	GATC	2 cut(s)	60, 94
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
SsiI	CCGC	1 cut(s)	113
SspDI	GGCGCC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	165, 509
SstI	GAGCTC	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	234
TatI	WGTACW	2 cut(s)	120, 297
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	225, 288
Tru9I	TTAA	2 cut(s)	225, 288
TspDTI	ATGAA	3 cut(s)	48, 221, 296
TspGWI	ACGGA	1 cut(s)	453
XceI	RCATGY	1 cut(s)	204
XmnI	GAANNNNTTC	3 cut(s)	42, 160, 240
XspI	CTAG	2 cut(s)	165, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.