Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011218.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

36662 .. 37484

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011218.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgcctaacccaagacaagagtgttggaaggacgccgaagatatagccttgtgcatagctgtagttactgttggtgaagacggctttaagggtactagtcaagagaaaaaaagattgtgggagtgtatacatgaagtatatgagacttgcaagcctgccagaggcgtggttagattgggaggagggtgtgacagtcgttggaaaaagattagaccggcatgccctcgatggcgtcaagctcttaacaaagcggcacttcttcgaggaagtggtgataatgccaccgacgaggaattacaagctaagtcaatatatcgtaccttagctaaaggagaggagtttgcgtttcaacattgttggccaacattaaaggatacaaaaaagtttagcaatcctccgggcatgaatgtcggtagctcaagtttttctacctctatcaacttagaggacgacggcagcccaagctcttcaaatgtgcatgcacgccccccaggtcaaaaagctcagaaggctgctaagaaaaaatccaagcaagacgaaacatgtgaactcttattgcaaatgcaaaggattgcagaccaaggagagcgcgatctcgaatacaagctgcgattcaaggaggagactagattagctgagcagcacgcggctgatgctcgtacaatgacagtggatccgtctattttcacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

230

Amino Acids

25.79

Weight (kDa)

8.57

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	127
AccII	CGCG	2 cut(s)	591, 647
AciI	CCGC	2 cut(s)	251, 647
AclWI	GGATC	2 cut(s)	668, 681
AcoI	YGGCCR	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	33, 232
AfaI	GTAC	3 cut(s)	94, 319, 661
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	350, 471, 616
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	9 cut(s)	59, 239, 302, 326, 417, 465, 503, 607, 635
AluI	AGCT	9 cut(s)	59, 239, 302, 326, 417, 465, 503, 607, 635
Alw26I	GTCTC	2 cut(s)	137, 617
AlwI	GGATC	2 cut(s)	668, 681
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	4 cut(s)	456, 512, 607, 640
AspLEI	GCGC	1 cut(s)	591
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	2 cut(s)	86, 284
BalI	TGGCCA	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	4 cut(s)	468, 499, 594, 652
BccI	CCATC	1 cut(s)	222
BceAI	ACGGC	2 cut(s)	97, 469
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	137, 617
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	2 cut(s)	96, 627
BfmI	CTRYAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	6 cut(s)	252, 457, 513, 608, 641, 648
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	6 cut(s)	253, 458, 514, 609, 642, 649
Bme1390I	CCNGG	2 cut(s)	399, 492
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	2 cut(s)	399, 492
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	33, 232
BsaJI	CCNNGG	2 cut(s)	490, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	490, 580
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	518, 627
BseRI	GAGGAG	3 cut(s)	195, 350, 635
BseXI	GCAGC	4 cut(s)	468, 499, 594, 652
Bsh1236I	CGCG	2 cut(s)	591, 647
BshFI	GGCC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	215, 398
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	137, 617
BsnI	GGCC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	592, 673
Bsp1720I	GCTNAGC	1 cut(s)	636
BspACI	CCGC	2 cut(s)	251, 647
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	517, 628
BspFNI	CGCG	2 cut(s)	591, 647
BspLI	GGNNCC	1 cut(s)	675
BspPI	GGATC	2 cut(s)	668, 681
BspQI	GCTCTTC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	490, 580
BssMI	GATC	2 cut(s)	592, 673
BssNAI	GTATAC	1 cut(s)	128
BssNI	GRCGYC	2 cut(s)	33, 232
BssT1I	CCWWGG	1 cut(s)	580
Bst1107I	GTATAC	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	70, 194, 670
Bst6I	CTCTTC	1 cut(s)	472
BstACI	GRCGYC	2 cut(s)	33, 232
BstC8I	GCNNGC	6 cut(s)	152, 156, 220, 480, 484, 645
BstDEI	CTNAG	6 cut(s)	303, 322, 442, 504, 516, 636
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstFNI	CGCG	2 cut(s)	591, 647
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	2 cut(s)	595, 676
BstMAI	GTCTC	2 cut(s)	137, 617
BstMBI	GATC	2 cut(s)	592, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	462, 509, 653
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	3 cut(s)	222, 482, 546
BstSCI	CCNGG	2 cut(s)	397, 490
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	2 cut(s)	591, 647
BstV1I	GCAGC	4 cut(s)	468, 499, 594, 652
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	673
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	673
BstZ17I	GTATAC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	6 cut(s)	152, 156, 220, 480, 484, 645
CfoI	GCGC	1 cut(s)	591
Cfr10I	RCCGGY	1 cut(s)	214
CseI	GACGC	2 cut(s)	41, 221
Csp6I	GTAC	3 cut(s)	93, 318, 660
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	5 cut(s)	131, 219, 403, 479, 543
CviQI	GTAC	3 cut(s)	93, 318, 660
DdeI	CTNAG	6 cut(s)	303, 322, 442, 504, 516, 636
DpnI	GATC	2 cut(s)	594, 675
DpnII	GATC	2 cut(s)	592, 673
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	580
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	5 cut(s)	134, 222, 406, 482, 546
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	5 cut(s)	130, 218, 402, 478, 542
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	6 cut(s)	252, 457, 513, 608, 641, 648
Fsp4HI	GCNGC	6 cut(s)	252, 457, 513, 608, 641, 648
FspBI	CTAG	2 cut(s)	96, 627
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	6 cut(s)	252, 457, 513, 608, 641, 648
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	2 cut(s)	215, 398
HgaI	GACGC	2 cut(s)	41, 221
HhaI	GCGC	1 cut(s)	591
Hin1I	GRCGYC	2 cut(s)	33, 232
Hin1II	CATG	5 cut(s)	134, 222, 406, 482, 546
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	612
HpaII	CCGG	2 cut(s)	215, 398
HphI	GGTGA	2 cut(s)	86, 284
Hpy166II	GTNNAC	2 cut(s)	128, 548
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	2 cut(s)	101, 596
Hpy8I	GTNNAC	2 cut(s)	128, 548
Hpy99I	CGWCG	2 cut(s)	290, 455
HpyAV	CCTTC	2 cut(s)	22, 502
HpyCH4III	ACNGT	3 cut(s)	70, 194, 670
HpyCH4V	TGCA	7 cut(s)	54, 150, 478, 482, 559, 565, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	462, 509, 653
HpyF3I	CTNAG	6 cut(s)	303, 322, 442, 504, 516, 636
Hsp92I	GRCGYC	2 cut(s)	33, 232
Hsp92II	CATG	5 cut(s)	134, 222, 406, 482, 546
HspAI	GCGC	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	592, 673
LguI	GCTCTTC	1 cut(s)	472
LpnPI	CCDG	6 cut(s)	168, 172, 228, 411, 477, 504
Lsp1109I	GCAGC	4 cut(s)	468, 499, 594, 652
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	2 cut(s)	96, 627
MaeIII	GTNAC	2 cut(s)	64, 188
MalI	GATC	2 cut(s)	594, 675
MboI	GATC	2 cut(s)	592, 673
MboII	GAAGA	4 cut(s)	50, 89, 251, 459
MflI	RGATCY	1 cut(s)	673
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	361
MmeI	TCCRAC	2 cut(s)	5, 179
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	3 cut(s)	87, 243, 368
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	2 cut(s)	215, 398
MspR9I	CCNGG	2 cut(s)	399, 492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	2 cut(s)	591, 647
MwoI	GCNNNNNNNGC	3 cut(s)	462, 509, 653
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	592, 673
NlaIII	CATG	5 cut(s)	134, 222, 406, 482, 546
NlaIV	GGNNCC	1 cut(s)	675
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	3 cut(s)	222, 482, 546
PaeI	GCATGC	2 cut(s)	222, 482
PciI	ACATGT	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	612
PkrI	GCNGC	6 cut(s)	253, 458, 514, 609, 642, 649
PscI	ACATGT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	673
RsaI	GTAC	3 cut(s)	94, 319, 661
RsaNI	GTAC	3 cut(s)	93, 318, 660
SapI	GCTCTTC	1 cut(s)	472
SaqAI	TTAA	3 cut(s)	87, 243, 368
SatI	GCNGC	6 cut(s)	252, 457, 513, 608, 641, 648
Sau3AI	GATC	2 cut(s)	592, 673
ScrFI	CCNGG	2 cut(s)	399, 492
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SpeI	ACTAGT	1 cut(s)	95
SphI	GCATGC	2 cut(s)	222, 482
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	251, 647
SspMI	CTAG	2 cut(s)	96, 627
StyD4I	CCNGG	2 cut(s)	397, 490
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	3 cut(s)	70, 194, 670
TaqI	TCGA	3 cut(s)	226, 262, 597
TasI	AATT	1 cut(s)	293
TauI	GCSGC	2 cut(s)	254, 650
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	3 cut(s)	87, 243, 368
Tru9I	TTAA	3 cut(s)	87, 243, 368
TscAI	CASTG	1 cut(s)	675
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	456, 512, 607, 640
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	147, 419
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	1 cut(s)	675
XagI	CCTNNNNNAGG	1 cut(s)	159
XceI	RCATGY	3 cut(s)	222, 482, 546
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	2 cut(s)	96, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.