Rmu_sc0006273.1_g000014

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006273.1
Physical Location & Seq
Forward (+)
81357 .. 81779
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006273.1_g000014.1.cds

Sequence Viewer

Length: 423 bp
atggaaaacatccactttagtgttcctaatcatgtcaacttggatgacgatgaaacaaccactactgaggatgagcttccctcattaagaaaggcacgtcctcaaggacagaaagctcataagctagctaagaaaaaatccaataagcaggatgcggatgacctacgagttcaaatgcagaaatgttatgaacaaacagaacgcgagtaccaacaaaggcaaagacagtttgaggaaagtcaactaattgagcaacgcactgaggatgcttgcatgatgcaggtgtatctatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggatgcagaaacttcaagcatcccggaacaatctcaagatcctacaccccctgaaggagacaacacatga

Protein Analysis

140

Amino Acids

16.59

Weight (kDa)

5.15

Isoelectric Point (pI)

71.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 271
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 386
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 173, 369
AjiI CACGTC 1 cut(s) 98
AleI CACNNNNGTG 1 cut(s) 18
AluBI AGCT 4 cut(s) 76, 116, 124, 128
AluI AGCT 4 cut(s) 76, 116, 124, 128
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 292
AsuNHI GCTAGC 1 cut(s) 124
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 5 cut(s) 142, 256, 267, 346, 381
BmtI GCTAGC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuEI CTTGAG 2 cut(s) 87, 372
BpuMI CCSGG 1 cut(s) 377
Bsc4I CCNNNNNNNGG 1 cut(s) 407
BseGI GGATG 8 cut(s) 9, 49, 76, 157, 163, 271, 361, 372
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 2 cut(s) 57, 252
BseRI GAGGAG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 58, 253
BspFNI CGCG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 386
BssMI GATC 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 126, 271
BstDEI CTNAG 3 cut(s) 66, 129, 261
BstF5I GGATG 8 cut(s) 9, 49, 76, 157, 163, 271, 361, 372
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 375
BstUI CGCG 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 8 cut(s) 9, 49, 76, 157, 163, 271, 361, 372
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 126, 271
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 32, 274, 420
CviJI RGCY 4 cut(s) 76, 116, 124, 128
CviKI_1 RGCY 4 cut(s) 76, 116, 124, 128
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 66, 129, 261
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
FaeI CATG 3 cut(s) 35, 277, 423
FaiI YATR 5 cut(s) 33, 120, 189, 275, 421
FatI CATG 3 cut(s) 31, 273, 419
FokI GGATG 7 cut(s) 56, 83, 164, 170, 278, 359, 368
FspBI CTAG 1 cut(s) 125
HapII CCGG 1 cut(s) 377
Hin1II CATG 3 cut(s) 35, 277, 423
HincII GTYRAC 2 cut(s) 37, 242
HindII GTYRAC 2 cut(s) 37, 242
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 37, 242
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 2 cut(s) 37, 242
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 178, 273, 280, 359
HpyF3I CTNAG 3 cut(s) 66, 129, 261
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 35, 277, 423
Kzo9I GATC 1 cut(s) 391
LpnPI CCDG 4 cut(s) 134, 266, 390, 417
LweI GCATC 5 cut(s) 142, 256, 267, 346, 381
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 97
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MflI RGATCY 1 cut(s) 391
MluCI AATT 3 cut(s) 246, 294, 345
MnlI CCTC 7 cut(s) 61, 91, 111, 226, 256, 306, 321
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 377
MvnI CGCG 1 cut(s) 204
NciI CCSGG 1 cut(s) 377
NdeII GATC 1 cut(s) 391
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 3 cut(s) 35, 277, 423
OliI CACNNNNGTG 1 cut(s) 18
PaqCI CACCTGC 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 375
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 377
SetI ASST 7 cut(s) 78, 100, 118, 126, 130, 165, 285
SfaNI GCATC 5 cut(s) 142, 256, 267, 346, 381
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 102, 387
SmoI CTYRAG 2 cut(s) 102, 387
Sse9I AATT 3 cut(s) 246, 294, 345
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 100
TasI AATT 3 cut(s) 246, 294, 345
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 66, 204
TspRI CASTG 1 cut(s) 265
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.