Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000616.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

154932 .. 155937

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000616.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggctccaagaggagattcttggatgcacaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatggttgcgtcggaaaagatcaaaagtcaaacttattgtggagtcgtgtggcagaggagtacaatgctcacaaaccggctggttgcatagatagaacaaattctagttgccacgctcgttggaagaaaataagtccggcatgtatgaagtggcgccaagctcttaacaaggtcaacactttcaacgaagaagcggcgaaaatatggaggacgagtgttcctaatcatgtcaacttggatgacgatggaacaaccactactgaggatgagcttctgtcatcaagaaaggcacgtcctcaaggacagaaagcacagaagctagctaagaaaaaaggcaataagcaggatgcggatggcgtacgagttcaaatgcagaaaagttatgaacaaactgaatgcgagtaccaacaaaggcaaagacagtttgaggaaggtcaactaattgagcaacgcgctgaggatgcttacacgatgcaggtggatccatcaattttcacccaaagaaagaggagttattgggagaggaagcaacaacaagtaatttataaggaggccgaaacttcaagcatcccagaacaatctcaagatcctacaccccctgaaggagacaacacaagattgaccacttatgatccacttggcgagacaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

242

Amino Acids

27.8

Weight (kDa)

6.46

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccB1I	GGYRCC	1 cut(s)	228
AccII	CGCG	1 cut(s)	528
AciI	CCGC	2 cut(s)	269, 425
AclWI	GGATC	5 cut(s)	68, 551, 564, 656, 701
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	3 cut(s)	137, 435, 479
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	259, 443, 639
AjiI	CACGTC	1 cut(s)	368
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	5 cut(s)	56, 236, 346, 394, 398
AluI	AGCT	5 cut(s)	56, 236, 346, 394, 398
Alw26I	GTCTC	2 cut(s)	675, 713
AlwI	GGATC	5 cut(s)	68, 551, 564, 656, 701
AoxI	GGCC	1 cut(s)	627
ApoI	RAATTY	1 cut(s)	175
Asp700I	GAANNNNTTC	2 cut(s)	42, 175
AspLEI	GCGC	2 cut(s)	231, 530
AsuHPI	GGTGA	3 cut(s)	55, 86, 562
AsuNHI	GCTAGC	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	531
BccI	CCATC	4 cut(s)	71, 314, 422, 568
BcoDI	GTCTC	2 cut(s)	675, 713
BfaI	CTAG	2 cut(s)	180, 395
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmgBI	CACGTC	1 cut(s)	368
BmiI	GGNNCC	3 cut(s)	6, 230, 558
BmsI	GCATC	5 cut(s)	15, 412, 526, 537, 651
BmtI	GCTAGC	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	357, 642
BsaHI	GRCGYC	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse118I	RCCGGY	1 cut(s)	151
BseGI	GGATG	7 cut(s)	30, 319, 346, 427, 433, 541, 642
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMII	CTCAG	2 cut(s)	327, 522
BseRI	GAGGAG	3 cut(s)	27, 146, 598
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	629
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	152, 212
BsiWI	CGTACG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	2 cut(s)	675, 713
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	629
Bsp143I	GATC	5 cut(s)	60, 94, 556, 661, 706
BspACI	CCGC	2 cut(s)	269, 425
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	2 cut(s)	328, 523
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	3 cut(s)	6, 230, 558
BspMI	ACCTGC	1 cut(s)	541
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	5 cut(s)	68, 551, 564, 656, 701
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	5 cut(s)	60, 94, 556, 661, 706
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	67, 498
BstACI	GRCGYC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	336, 399, 531
BstF5I	GGATG	7 cut(s)	30, 319, 346, 427, 433, 541, 642
BstFNI	CGCG	1 cut(s)	528
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	231, 530
BstKTI	GATC	5 cut(s)	63, 97, 559, 664, 709
BstMAI	GTCTC	2 cut(s)	675, 713
BstMBI	GATC	5 cut(s)	60, 94, 556, 661, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	219
BstUI	CGCG	1 cut(s)	528
BstX2I	RGATCY	2 cut(s)	556, 661
BstYI	RGATCY	2 cut(s)	556, 661
BsuRI	GGCC	1 cut(s)	629
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	7 cut(s)	30, 319, 346, 427, 433, 541, 642
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	2 cut(s)	231, 530
Cfr10I	RCCGGY	1 cut(s)	151
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	136, 434, 478
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	2 cut(s)	216, 302
CviJI	RGCY	8 cut(s)	5, 56, 155, 236, 346, 394, 398, 629
CviKI_1	RGCY	8 cut(s)	5, 56, 155, 236, 346, 394, 398, 629
CviQI	GTAC	3 cut(s)	136, 434, 478
DdeI	CTNAG	3 cut(s)	336, 399, 531
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	5 cut(s)	62, 96, 558, 663, 708
DpnII	GATC	5 cut(s)	60, 94, 556, 661, 706
Eco57I	CTGAAG	1 cut(s)	696
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	2 cut(s)	219, 305
FaiI	YATR	8 cut(s)	164, 217, 221, 280, 303, 459, 621, 705
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 92, 124
FatI	CATG	2 cut(s)	215, 301
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	7 cut(s)	37, 326, 353, 434, 440, 548, 629
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	180, 395
GlaI	GCGC	2 cut(s)	230, 529
GluI	GCNGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	2 cut(s)	152, 212
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	231, 530
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	219, 305
Hin6I	GCGC	2 cut(s)	229, 528
HinP1I	GCGC	2 cut(s)	229, 528
HincII	GTYRAC	3 cut(s)	250, 307, 512
HindII	GTYRAC	3 cut(s)	250, 307, 512
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	17, 118
HpaII	CCGG	2 cut(s)	152, 212
HphI	GGTGA	3 cut(s)	55, 86, 562
Hpy166II	GTNNAC	3 cut(s)	250, 307, 512
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	357, 659
Hpy8I	GTNNAC	3 cut(s)	250, 307, 512
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	500, 671
HpyCH4III	ACNGT	2 cut(s)	67, 498
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	28, 162, 448, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	3 cut(s)	336, 399, 531
HpySE526I	ACGT	1 cut(s)	367
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	219, 305
HspAI	GCGC	2 cut(s)	229, 528
KasI	GGCGCC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	60, 94, 556, 661, 706
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	7 cut(s)	141, 165, 225, 404, 536, 660, 687
LweI	GCATC	5 cut(s)	15, 412, 526, 537, 651
MaeI	CTAG	2 cut(s)	180, 395
MaeII	ACGT	1 cut(s)	367
MalI	GATC	5 cut(s)	62, 96, 558, 663, 708
MboI	GATC	5 cut(s)	60, 94, 556, 661, 706
MboII	GAAGA	3 cut(s)	47, 211, 275
MflI	RGATCY	2 cut(s)	556, 661
MluCI	AATT	4 cut(s)	175, 516, 564, 615
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	67, 176
MroXI	GAANNNNTTC	2 cut(s)	42, 175
MseI	TTAA	1 cut(s)	240
MspI	CCGG	2 cut(s)	152, 212
Mva1269I	GAATGC	1 cut(s)	476
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	536
NarI	GGCGCC	1 cut(s)	229
NdeII	GATC	5 cut(s)	60, 94, 556, 661, 706
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	2 cut(s)	219, 305
NlaIV	GGNNCC	3 cut(s)	6, 230, 558
NspI	RCATGY	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	541
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	2 cut(s)	42, 175
PfeI	GAWTC	1 cut(s)	17
Pfl23II	CGTACG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	126
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	621
PspLI	CGTACG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	6, 230, 558
PsrI	GAACNNNNNNTAC	2 cut(s)	316, 348
PsuI	RGATCY	2 cut(s)	556, 661
RsaI	GTAC	3 cut(s)	137, 435, 479
RsaNI	GTAC	3 cut(s)	136, 434, 478
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	5 cut(s)	60, 94, 556, 661, 706
SchI	GAGTC	1 cut(s)	127
SetI	ASST	9 cut(s)	58, 238, 249, 348, 370, 396, 400, 511, 555
SfaNI	GCATC	5 cut(s)	15, 412, 526, 537, 651
SfoI	GGCGCC	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	372, 657
SmoI	CTYRAG	2 cut(s)	372, 657
Sse9I	AATT	4 cut(s)	175, 516, 564, 615
SsiI	CCGC	2 cut(s)	269, 425
SspDI	GGCGCC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	180, 395
TaaI	ACNGT	2 cut(s)	67, 498
TaiI	ACGT	1 cut(s)	370
TasI	AATT	4 cut(s)	175, 516, 564, 615
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	48, 236, 474
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	42, 175
XspI	CTAG	2 cut(s)	180, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.