Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

27542395 .. 27549884

Gene Structure 7490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34882.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATGATCTCTTGGCATTGGGTTCTTCCAAGGGCAGAGCCAACCCAGCTTGGTCGTCATCCTTTCACTCCTTTGCCCATCGACTCGCCCAACGTCGTCGCCCGATGCCCATCCGGCCATCCCACTGATCCTAGTCCCCGAATCCCAATCCCTACTTTCTATCTTCCTCAGATGTCCAACCCCAAACCTAGAAGAGAAGCTTGGAAAAACCCCGAAGATGTGTCGTTGTGCATGGCGGTGTTGCGGTTGGTGAAGACGGTGACAAAGCTACTGGTCAAGAGAAGAAAAAATTGTGGGATCGTATATGGGAAGTGTATGAAGCTTGCAAGCCACCCGGTTCCGTTATTAGATCAGGAGGAGGAAAGATTAGACCGGGTTGCACAAGGTGACGTGAAGCTCTTACCAAAGCGGAGGCCGCTCAGGCAAGTGGTGAAAATGCCGCCAACTTGTGGTCCGTCACCTATTGAGGGAACCCCAAGCCCTTCAAATGTGCATGCACGCCCTCCAGGCCAAAAAGCTCAAAGGGCTGCTAAGAAAAGATGCAAGCAAGATGACACATCTCAACTCTTAGCTCAAATGAAAAGAATTGCAGACCAAGGAGATCGCGATCTCGAACATAGGCTACAACTTAGGGAGGAGACTAGACTTGCACAAGAACGTGCGGATGATGCAGCCACAATGGCGGTGGATCCATCACTAGCCTCTCACACAACGACACGAGGAGCTAAAGTATACCCAAAATTCGAGATCCGAAATCTTATCGGATATGTAATTATTGAGAAGATAGACATTGTCACGTGGCAGATAAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

272

Amino Acids

30.67

Weight (kDa)

9.89

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	732
AccII	CGCG	1 cut(s)	606
AciI	CCGC	7 cut(s)	236, 244, 409, 416, 440, 662, 683
AclWI	GGATC	5 cut(s)	122, 305, 683, 696, 742
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	740
AcvI	CACGTG	1 cut(s)	798
AdeI	CACNNNGTG	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	449, 467
AgsI	TTSAA	1 cut(s)	486
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	8 cut(s)	49, 200, 268, 322, 397, 518, 572, 725
AluI	AGCT	8 cut(s)	49, 200, 268, 322, 397, 518, 572, 725
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	5 cut(s)	122, 305, 683, 696, 742
AoxI	GGCC	3 cut(s)	115, 413, 508
ApeKI	GCWGC	2 cut(s)	527, 671
ApoI	RAATTY	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	2 cut(s)	335, 374
AsuHPI	GGTGA	5 cut(s)	262, 271, 398, 442, 450
AvaII	GGWCC	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	688
BauI	CACGAG	1 cut(s)	717
BbrPI	CACGTG	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	514, 683
BccI	CCATC	4 cut(s)	86, 118, 126, 700
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	2 cut(s)	335, 374
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	4 cut(s)	132, 189, 642, 698
BglI	GCCNNNNNGGC	4 cut(s)	114, 421, 507, 680
BisI	GCNGC	4 cut(s)	416, 440, 528, 672
BlsI	GCNGC	4 cut(s)	417, 441, 529, 673
Bme1390I	CCNGG	3 cut(s)	335, 374, 507
Bme18I	GGWCC	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	3 cut(s)	339, 472, 690
BmrFI	CCNGG	3 cut(s)	335, 374, 507
BmsI	GCATC	3 cut(s)	95, 530, 658
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	335, 374
BsaAI	YACGTR	1 cut(s)	798
BsaBI	GATNNNNATC	3 cut(s)	109, 606, 809
BsaJI	CCNNGG	2 cut(s)	29, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 467
Bse1I	ACTGG	1 cut(s)	276
Bse8I	GATNNNNATC	3 cut(s)	109, 606, 809
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	29, 595
BseGI	GGATG	4 cut(s)	58, 110, 118, 670
BseJI	GATNNNNATC	3 cut(s)	109, 606, 809
BseLI	CCNNNNNNNGG	2 cut(s)	449, 467
BseMII	CTCAG	2 cut(s)	182, 433
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	371, 650, 735
BseXI	GCAGC	2 cut(s)	514, 683
BseYI	CCCAGC	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	3 cut(s)	117, 415, 510
BsiSI	CCGG	3 cut(s)	114, 335, 373
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	449, 467
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	117, 415, 510
Bsp143I	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
Bsp68I	TCGCGA	1 cut(s)	606
BspACI	CCGC	7 cut(s)	236, 244, 409, 416, 440, 662, 683
BspANI	GGCC	3 cut(s)	117, 415, 510
BspCNI	CTCAG	2 cut(s)	181, 432
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	3 cut(s)	339, 472, 690
BspPI	GGATC	5 cut(s)	122, 305, 683, 696, 742
BsrBI	CCGCTC	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	29, 595
BssMI	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
BssNAI	GTATAC	1 cut(s)	733
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	2 cut(s)	29, 595
Bst1107I	GTATAC	1 cut(s)	733
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	187
BstBAI	YACGTR	1 cut(s)	798
BstC8I	GCNNGC	5 cut(s)	324, 328, 495, 499, 545
BstDEI	CTNAG	5 cut(s)	168, 419, 531, 568, 629
BstF5I	GGATG	4 cut(s)	58, 110, 118, 670
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	8 cut(s)	9, 130, 300, 352, 604, 610, 691, 750
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
BstMWI	GCNNNNNNNGC	8 cut(s)	46, 114, 415, 421, 507, 524, 668, 680
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	3 cut(s)	333, 372, 505
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	514, 683
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	2 cut(s)	688, 747
BstYI	RGATCY	2 cut(s)	688, 747
BstZ17I	GTATAC	1 cut(s)	733
BsuRI	GGCC	3 cut(s)	117, 415, 510
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	4 cut(s)	58, 110, 118, 670
BtsIMutI	CAGTG	1 cut(s)	123
BtuMI	TCGCGA	1 cut(s)	606
Cac8I	GCNNGC	5 cut(s)	324, 328, 495, 499, 545
Cfr13I	GGNCC	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	666, 701
CviAII	CATG	2 cut(s)	232, 494
DdeI	CTNAG	5 cut(s)	168, 419, 531, 568, 629
DpnI	GATC	8 cut(s)	8, 129, 299, 351, 603, 609, 690, 749
DpnII	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
DraIII	CACNNNGTG	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	29, 595
Eco47I	GGWCC	1 cut(s)	452
Eco72I	CACGTG	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	29, 595
ErhI	CCWWGG	2 cut(s)	29, 595
FaeI	CATG	2 cut(s)	235, 497
FaiI	YATR	8 cut(s)	233, 304, 306, 317, 495, 618, 733, 768
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	2 cut(s)	231, 493
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	4 cut(s)	416, 440, 528, 672
FokI	GGATG	4 cut(s)	45, 97, 105, 677
Fsp4HI	GCNGC	4 cut(s)	416, 440, 528, 672
FspBI	CTAG	4 cut(s)	132, 189, 642, 698
GluI	GCNGC	4 cut(s)	416, 440, 528, 672
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	3 cut(s)	117, 415, 510
HapII	CCGG	3 cut(s)	114, 335, 373
Hin1II	CATG	2 cut(s)	235, 497
HindIII	AAGCTT	2 cut(s)	198, 320
HinfI	GANTC	2 cut(s)	83, 141
HpaII	CCGG	3 cut(s)	114, 335, 373
HphI	GGTGA	5 cut(s)	262, 271, 398, 442, 450
Hpy166II	GTNNAC	1 cut(s)	733
Hpy188I	TCNGA	3 cut(s)	171, 752, 764
Hpy188III	TCNNGA	5 cut(s)	277, 353, 605, 611, 745
Hpy8I	GTNNAC	1 cut(s)	733
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	4 cut(s)	93, 390, 658, 797
HpyCH4V	TGCA	9 cut(s)	231, 326, 380, 493, 497, 543, 590, 650, 671
HpyF10VI	GCNNNNNNNGC	8 cut(s)	46, 114, 415, 421, 507, 524, 668, 680
HpyF3I	CTNAG	5 cut(s)	168, 419, 531, 568, 629
HpySE526I	ACGT	4 cut(s)	93, 390, 658, 797
Hsp92II	CATG	2 cut(s)	235, 497
Kzo9I	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
LmnI	GCTCC	1 cut(s)	722
LpnPI	CCDG	9 cut(s)	59, 127, 257, 338, 348, 386, 406, 492, 519
Lsp1109I	GCAGC	2 cut(s)	514, 683
LweI	GCATC	3 cut(s)	95, 530, 658
MaeI	CTAG	4 cut(s)	132, 189, 642, 698
MaeII	ACGT	4 cut(s)	93, 390, 658, 797
MaeIII	GTNAC	4 cut(s)	259, 386, 456, 793
MalI	GATC	8 cut(s)	8, 129, 299, 351, 603, 609, 690, 749
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
MboII	GAAGA	7 cut(s)	17, 155, 204, 227, 265, 294, 793
MflI	RGATCY	2 cut(s)	688, 747
MluCI	AATT	4 cut(s)	289, 585, 740, 771
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	9 cut(s)	177, 349, 352, 405, 460, 513, 628, 712, 713
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	3 cut(s)	114, 335, 373
MspR9I	CCNGG	3 cut(s)	335, 374, 507
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	8 cut(s)	46, 114, 415, 421, 507, 524, 668, 680
NciI	CCSGG	2 cut(s)	335, 374
NdeII	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
NlaIII	CATG	2 cut(s)	235, 497
NlaIV	GGNNCC	3 cut(s)	339, 472, 690
NmuCI	GTSAC	4 cut(s)	259, 386, 456, 793
NruI	TCGCGA	1 cut(s)	606
NspI	RCATGY	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	791
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	4 cut(s)	417, 441, 529, 673
PleI	GAGTC	1 cut(s)	77
PmaCI	CACGTG	1 cut(s)	798
PmlI	CACGTG	1 cut(s)	798
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	339, 472, 690
PspPI	GGNCC	1 cut(s)	452
PsrI	GAACNNNNNNTAC	2 cut(s)	606, 638
PsuI	RGATCY	2 cut(s)	688, 747
PsyI	GACNNNGTC	1 cut(s)	791
RruI	TCGCGA	1 cut(s)	606
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	4 cut(s)	416, 440, 528, 672
Sau3AI	GATC	8 cut(s)	6, 127, 297, 349, 601, 607, 688, 747
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	335, 374, 507
SfaNI	GCATC	3 cut(s)	95, 530, 658
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	497
Sse9I	AATT	4 cut(s)	289, 585, 740, 771
SsiI	CCGC	7 cut(s)	236, 244, 409, 416, 440, 662, 683
SspMI	CTAG	4 cut(s)	132, 189, 642, 698
StyD4I	CCNGG	3 cut(s)	333, 372, 505
StyI	CCWWGG	2 cut(s)	29, 595
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	4 cut(s)	96, 393, 661, 800
TaqI	TCGA	3 cut(s)	81, 612, 744
TasI	AATT	4 cut(s)	289, 585, 740, 771
TauI	GCSGC	2 cut(s)	418, 442
TfiI	GAWTC	1 cut(s)	141
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	4 cut(s)	259, 386, 456, 793
TseI	GCWGC	2 cut(s)	527, 671
Tsp45I	GTSAC	4 cut(s)	259, 386, 456, 793
TspDTI	ATGAA	2 cut(s)	332, 593
TspGWI	ACGGA	2 cut(s)	330, 444
TspRI	CASTG	1 cut(s)	130
Tth111I	GACNNNGTC	1 cut(s)	791
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	4 cut(s)	132, 189, 642, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.