Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

68360947 .. 68361314

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21708

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCAAAGGATTGCAGACCAAGGAGAGCGCGATCTCGAATACAGGCTGCGACTCAGGGAGGAGACTAAATTAGCTGAGCAGCACGCGGATGATGCTCGCACAATGAAAGTGGATCCGTCAATTTTCACACCCAAAAAAAGGAGTTATTGGGAGAGGAAGCAAGCACAGATTATTGAGAGGGAGGAACAAAGCTCTAGTGCTAGTGCATTTCGTCAACCCTCCTTTTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

77

Amino Acids

9.16

Weight (kDa)

8.09

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	30, 86
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	2 cut(s)	107, 120
AfiI	CCNNNNNNNGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	74, 192
AluI	AGCT	2 cut(s)	74, 192
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	107, 120
ApeKI	GCWGC	2 cut(s)	46, 79
AspLEI	GCGC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	33, 91
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	195, 201
BisI	GCNGC	2 cut(s)	47, 80
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	2 cut(s)	48, 81
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	82
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	66, 67
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	33, 91
Bsh1236I	CGCG	2 cut(s)	30, 86
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	31, 112
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	66, 67
BspFNI	CGCG	2 cut(s)	30, 86
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	107, 120
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	31, 112
BssT1I	CCWWGG	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	84, 97, 162
BstDEI	CTNAG	2 cut(s)	53, 75
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	2 cut(s)	30, 86
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	34, 115
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	31, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstUI	CGCG	2 cut(s)	30, 86
BstV1I	GCAGC	2 cut(s)	33, 91
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	84, 97, 162
CfoI	GCGC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviJI	RGCY	3 cut(s)	46, 74, 192
CviKI_1	RGCY	3 cut(s)	46, 74, 192
DdeI	CTNAG	2 cut(s)	53, 75
DpnI	GATC	2 cut(s)	33, 114
DpnII	GATC	2 cut(s)	31, 112
Eco130I	CCWWGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaiI	YATR	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	47, 80
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	47, 80
FspBI	CTAG	2 cut(s)	195, 201
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	47, 80
HhaI	GCGC	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	4, 14, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	53, 75
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	31, 112
LpnPI	CCDG	2 cut(s)	28, 40
Lsp1109I	GCAGC	2 cut(s)	33, 91
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	195, 201
MalI	GATC	2 cut(s)	33, 114
MboI	GATC	2 cut(s)	31, 112
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	2 cut(s)	68, 120
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	52, 147, 171, 175, 229
MslI	CAYNNNNRTG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	30, 86
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	31, 112
NlaIV	GGNNCC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	48, 81
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	2 cut(s)	47, 80
Sau3AI	GATC	2 cut(s)	31, 112
SchI	GAGTC	1 cut(s)	45
SetI	ASST	2 cut(s)	76, 194
SfaNI	GCATC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	68, 120
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	195, 201
StyI	CCWWGG	1 cut(s)	19
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	68, 120
TseI	GCWGC	2 cut(s)	46, 79
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	105
XspI	CTAG	2 cut(s)	195, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.