RchiOBHm_Chr7g0202551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000386
Physical Location & Seq
Reverse (-)
20150905 .. 20151526
622 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18132

Sequence Viewer

Length: 195 bp
ATGAAGTATACGAGACTTGCAAGCCTGCCGGAGGCGTGGTTAGATTGGGAGGAGGGTGTGACGGTCGTTGGAAAAAGATTAGACCGGCATGCGCTCGATGGCGTCAAGCTCTTAACAAAGCGGCACTTCTTCGAGGAAGTGGTGATAATGCCACCGACGAGATATTACAAGCTAAGTCAATCTATCGTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.52

Weight (kDa)

9.16

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AciI CCGC 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 31
AluBI AGCT 2 cut(s) 109, 172
AluI AGCT 2 cut(s) 109, 172
Alw26I GTCTC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 154
BccI CCATC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 7
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 29, 85
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 7
BspACI CCGC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 84
BssNAI GTATAC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 64
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 3 cut(s) 22, 26, 90
BstDEI CTNAG 2 cut(s) 173, 192
BstENI CCTNNNNNAGG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 9
Cac8I GCNNGC 3 cut(s) 22, 26, 90
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 84
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 24, 109, 172
CviKI_1 RGCY 3 cut(s) 24, 109, 172
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 173, 192
EcoNI CCTNNNNNAGG 1 cut(s) 29
FaeI CATG 1 cut(s) 92
FaiI YATR 2 cut(s) 9, 90
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 1 cut(s) 88
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 122
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 122
HapII CCGG 2 cut(s) 29, 85
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HpaII CCGG 2 cut(s) 29, 85
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 173, 192
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 92
LpnPI CCDG 3 cut(s) 38, 42, 98
MaeIII GTNAC 1 cut(s) 58
MboII GAAGA 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 4 cut(s) 25, 43, 46, 127
MseI TTAA 1 cut(s) 113
MspI CCGG 2 cut(s) 29, 85
NlaIII CATG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 92
PaeI GCATGC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 123
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 122
SetI ASST 3 cut(s) 111, 174, 193
SphI GCATGC 1 cut(s) 92
SsiI CCGC 1 cut(s) 121
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 96, 132
TauI GCSGC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 29
XceI RCATGY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.