pycom01g05740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000386
Physical Location & Seq
Forward (+)
5590121 .. 5590683
563 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05740.1

Sequence Viewer

Length: 501 bp
ATGGATTTTTTAAGTTGGGGAAGATTATTTCATAGTGAAGCCTCGCCCTCAAATGATTTCAATGAAGGTGCGAATGAAGGTGTCAATGAAGGTATCGAACAAATGACCCCAACTTCTTCTTTTGCAAGGCCCCCGGGAAGAGATAAGCAAAAGGAAGCAAAGAGAAAAGGGAAGTTCCAAGATCCAATGAGTGGACACATTGCTACCGGAATTGCAAAATTGAGCGAAAACCATAGCGCTCGCCAAGAAGAAGCGACTCAAATGCGTTTGCAAATGAAGGAAGAAGGGGATAGAGAGCAAGAGAGGTTCAAAATAAATTTGATGATGGACCTCAACAAATACACTCCAAAGAGTAAGAAGTACTTACGTGGTAAGCAAAGGGAAATTTTGCAAAGGGATGCTAGAAGGAGTATAGTTCAAGATGATAATTCATCTCAAGGCTATATCCCAAGTCCACCATTAAGTCCATCACCAAATCAAGATGGTGGATATCATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.95

Weight (kDa)

8.78

Isoelectric Point (pI)

65.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 2 cut(s) 316, 384
AfaI GTAC 1 cut(s) 362
AfeI AGCGCT 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 61, 310, 419
AlwI GGATC 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 133
Aor51HI AGCGCT 1 cut(s) 238
AoxI GGCC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 316, 384
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 129, 328
AsuC2I CCSGG 2 cut(s) 134, 135
AsuHPI GGTGA 1 cut(s) 462
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 328
BccI CCATC 3 cut(s) 319, 475, 476
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BcnI CCSGG 2 cut(s) 134, 135
BfaI CTAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 240
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 134, 135
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 129, 328
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 134, 135
BmsI GCATC 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 2 cut(s) 134, 135
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 132, 133
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 132, 133
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 198
BshFI GGCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 2 cut(s) 134, 207
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 133
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 132, 133
BssMI GATC 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 403
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 132, 133
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 241
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 129, 328
Cfr9I CCCGGG 1 cut(s) 133
Csp6I GTAC 1 cut(s) 361
CviJI RGCY 3 cut(s) 41, 130, 441
CviKI_1 RGCY 3 cut(s) 41, 130, 441
CviQI GTAC 1 cut(s) 361
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco32I GATATC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 129
EcoRV GATATC 1 cut(s) 491
FaiI YATR 4 cut(s) 33, 234, 413, 444
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FokI GGATG 1 cut(s) 410
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 1 cut(s) 130
HapII CCGG 2 cut(s) 134, 207
HhaI GCGC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 256
HpaII CCGG 2 cut(s) 134, 207
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 2 cut(s) 194, 455
Hpy188III TCNNGA 2 cut(s) 419, 479
Hpy8I GTNNAC 2 cut(s) 194, 455
HpyAV CCTTC 6 cut(s) 59, 71, 83, 271, 278, 399
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 125, 215, 271, 391
HpySE526I ACGT 1 cut(s) 367
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 2 cut(s) 147, 220
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 367
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 5 cut(s) 33, 108, 150, 260, 293
MflI RGATCY 1 cut(s) 181
MluCI AATT 5 cut(s) 210, 218, 316, 384, 427
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 4 cut(s) 52, 58, 297, 341
MseI TTAA 3 cut(s) 11, 461, 499
MspI CCGG 2 cut(s) 134, 207
MspR9I CCNGG 2 cut(s) 134, 135
NciI CCSGG 2 cut(s) 134, 135
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 191
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 129, 328
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SaqAI TTAA 3 cut(s) 11, 461, 499
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 2 cut(s) 129, 328
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 134, 135
SetI ASST 6 cut(s) 70, 82, 94, 308, 333, 370
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 1 cut(s) 328
SmaI CCCGGG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 5 cut(s) 210, 218, 316, 384, 427
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 132, 133
TaiI ACGT 1 cut(s) 370
TaqI TCGA 1 cut(s) 96
TasI AATT 5 cut(s) 210, 218, 316, 384, 427
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 3 cut(s) 11, 461, 499
Tru9I TTAA 3 cut(s) 11, 461, 499
TspDTI ATGAA 6 cut(s) 20, 78, 90, 102, 290, 420
TspMI CCCGGG 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 2 cut(s) 316, 384
XmaI CCCGGG 1 cut(s) 133
XspI CTAG 1 cut(s) 402
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.