Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036358.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 433

Gene Structure 433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 433 bp

cttggatgacgatggaacacccaatactgatgatgagccgactccatcaaggaaggcacgtcctcaaggacagaaagctcaaaagctagctaagaaaaaaggcaataagcaggatgcggatgggctacgagttcaaatgcagaaatgttatgaacaaacagagcgcaagtaccaacaaaggcaaagacagtttgaggaaggccaactaattgagcaacgcgctgaggatgctcgcacgatgcaagtggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggcagaaacttcaagcatcccggaacaatctcaagatcctacaccctctggaggagacaacacatgtacaggcttggccacttatgattcacttcaagagacaaattggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

143

Amino Acids

16.51

Weight (kDa)

5.34

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	220
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	3 cut(s)	243, 256, 348
AcoI	YGGCCR	1 cut(s)	394
AfaI	GTAC	2 cut(s)	171, 386
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	135, 331, 414
AjiI	CACGTC	1 cut(s)	60
AluBI	AGCT	3 cut(s)	78, 86, 90
AluI	AGCT	3 cut(s)	78, 86, 90
Alw26I	GTCTC	2 cut(s)	367, 411
AlwI	GGATC	3 cut(s)	243, 256, 348
AoxI	GGCC	2 cut(s)	200, 394
AspLEI	GCGC	2 cut(s)	166, 222
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	254
AsuNHI	GCTAGC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	223
BccI	CCATC	4 cut(s)	6, 53, 114, 260
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	367, 411
BfaI	CTAG	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	339
BmgBI	CACGTC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	4 cut(s)	104, 218, 229, 343
BmtI	GCTAGC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	388
Bpu10I	CCTNAGC	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	49, 334
BpuMI	CCSGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
BseGI	GGATG	6 cut(s)	11, 119, 125, 233, 334, 433
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	290, 385
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	202, 396
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	367, 411
BsnI	GGCC	2 cut(s)	202, 396
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	248, 353
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	202, 396
BspCNI	CTCAG	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	243, 256, 348
BsrGI	TGTACA	1 cut(s)	384
BssMI	GATC	2 cut(s)	248, 353
Bst4CI	ACNGT	1 cut(s)	190
BstAUI	TGTACA	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	88, 233
BstDEI	CTNAG	2 cut(s)	91, 223
BstF5I	GGATG	6 cut(s)	11, 119, 125, 233, 334, 433
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	2 cut(s)	166, 222
BstKTI	GATC	2 cut(s)	251, 356
BstMAI	GTCTC	2 cut(s)	367, 411
BstMBI	GATC	2 cut(s)	248, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	248, 353
BstYI	RGATCY	2 cut(s)	248, 353
BsuRI	GGCC	2 cut(s)	202, 396
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	6 cut(s)	11, 119, 125, 233, 334, 433
Cac8I	GCNNGC	2 cut(s)	88, 233
CfoI	GCGC	2 cut(s)	166, 222
Csp6I	GTAC	2 cut(s)	170, 385
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	8 cut(s)	38, 78, 86, 90, 125, 202, 391, 396
CviKI_1	RGCY	8 cut(s)	38, 78, 86, 90, 125, 202, 391, 396
CviQI	GTAC	2 cut(s)	170, 385
DdeI	CTNAG	2 cut(s)	91, 223
DpnI	GATC	2 cut(s)	250, 355
DpnII	GATC	2 cut(s)	248, 353
EaeI	YGGCCR	1 cut(s)	394
FaeI	CATG	1 cut(s)	385
FaiI	YATR	3 cut(s)	151, 383, 403
FatI	CATG	1 cut(s)	381
FokI	GGATG	5 cut(s)	18, 126, 132, 240, 321
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	2 cut(s)	165, 221
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	202, 396
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	2 cut(s)	166, 222
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	164, 220
HinP1I	GCGC	2 cut(s)	164, 220
HinfI	GANTC	2 cut(s)	41, 405
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	351, 367, 414
HpyAV	CCTTC	2 cut(s)	47, 192
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	140, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	2 cut(s)	91, 223
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	2 cut(s)	164, 220
Kzo9I	GATC	2 cut(s)	248, 353
LpnPI	CCDG	4 cut(s)	96, 352, 352, 373
LweI	GCATC	4 cut(s)	104, 218, 229, 343
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	59
MalI	GATC	2 cut(s)	250, 355
MboI	GATC	2 cut(s)	248, 353
MflI	RGATCY	2 cut(s)	248, 353
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	4 cut(s)	208, 256, 307, 422
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	73, 188, 218, 268, 283, 311, 363, 374
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	248, 353
NheI	GCTAGC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	385
PciI	ACATGT	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	405
PfoI	TCCNGGA	1 cut(s)	337
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	250
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PsuI	RGATCY	2 cut(s)	248, 353
RsaI	GTAC	2 cut(s)	171, 386
RsaNI	GTAC	2 cut(s)	170, 385
Sau3AI	GATC	2 cut(s)	248, 353
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	4 cut(s)	62, 80, 88, 92
SfaNI	GCATC	4 cut(s)	104, 218, 229, 343
SmlI	CTYRAG	2 cut(s)	64, 349
SmoI	CTYRAG	2 cut(s)	64, 349
Sse9I	AATT	4 cut(s)	208, 256, 307, 422
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	62
TasI	AATT	4 cut(s)	208, 256, 307, 422
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	405
TspDTI	ATGAA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.