Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

16859575 .. 16860332

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTCCAAGAGGGGATTCTTGGAGGCACAATGAAGAAGTTATTCTTTGCCAAGCTTGGATCACCGTTGGGGGTGATGGTTGCGTCGGAAAAGATCAAAAGTCAGACTTATTGTGGAGTCGTGTGGCGGAGGAGTACAATGCTCACAAACCGGCCGGTTGCATGGATAGAACACATTCTAGTTGCCACGCTCGTTGGAAGAAAATAAGTCCGGCATGTATGAAGTGGCGCCAAGCTCTTAACAAGCTCATGAATGTTAAATCAACATACTACGACTCGGAAGGTTGCGATTTTGTGTTTGAGCATTGTTGGCAATACTTGAAAAATATTGAAAAGTTTGGGAAAACCCCATCAATGGAAAACACCCACTTTAGTGTTCCTAATCATGTCAACTTGGATGACGATGGAACAACCACTACTGAGGATGAGCTTCCGTCATCAAGAAAAGCACGTCCTCAAGGACAGAAAGCACAGAAGCTAGCTAAGAAAAAAGGCAATAAGCAGGATGCGGATGGCCTACGAGTTCAAATGCAGAAATGTTATGAACAAACCGAACGCGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

188

Amino Acids

21.63

Weight (kDa)

8.36

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccII	CGCG	1 cut(s)	558
AciI	CCGC	2 cut(s)	128, 509
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	2 cut(s)	137, 563
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	322, 332, 527
AjiI	CACGTC	1 cut(s)	452
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	372
AluBI	AGCT	6 cut(s)	56, 236, 247, 430, 478, 482
AluI	AGCT	6 cut(s)	56, 236, 247, 430, 478, 482
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	2 cut(s)	153, 514
Asp700I	GAANNNNTTC	2 cut(s)	42, 175
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	55, 86
AsuNHI	GCTAGC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	228
BccI	CCATC	4 cut(s)	71, 358, 398, 506
BfaI	CTAG	2 cut(s)	180, 479
BfoI	RGCGCY	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	6, 230
BmsI	GCATC	1 cut(s)	496
BmtI	GCTAGC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	2 cut(s)	151, 155
BseGI	GGATG	4 cut(s)	403, 430, 511, 517
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	558
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	155, 516
BshNI	GGYRCC	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	152, 156, 212
BslI	CCNNNNNNNGG	1 cut(s)	355
BsnI	GGCC	2 cut(s)	155, 516
Bsp143I	GATC	2 cut(s)	60, 94
BspACI	CCGC	2 cut(s)	128, 509
BspANI	GGCC	2 cut(s)	155, 516
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	6, 230
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	2 cut(s)	151, 155
BssAI	RCCGGY	2 cut(s)	151, 155
BssMI	GATC	2 cut(s)	60, 94
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	420, 483
BstF5I	GGATG	4 cut(s)	403, 430, 511, 517
BstFNI	CGCG	1 cut(s)	558
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	63, 97
BstMBI	GATC	2 cut(s)	60, 94
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	219
BstUI	CGCG	1 cut(s)	558
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	155, 516
BtrI	CACGTC	1 cut(s)	452
BtsCI	GGATG	4 cut(s)	403, 430, 511, 517
Cac8I	GCNNGC	1 cut(s)	480
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	2 cut(s)	151, 155
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	136, 562
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	4 cut(s)	163, 216, 250, 386
CviJI	RGCY	9 cut(s)	5, 56, 155, 236, 247, 430, 478, 482, 516
CviKI_1	RGCY	9 cut(s)	5, 56, 155, 236, 247, 430, 478, 482, 516
CviQI	GTAC	2 cut(s)	136, 562
DdeI	CTNAG	2 cut(s)	420, 483
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	2 cut(s)	62, 96
DpnII	GATC	2 cut(s)	60, 94
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	4 cut(s)	166, 219, 253, 389
FaiI	YATR	7 cut(s)	164, 217, 221, 251, 268, 387, 543
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 92, 124
FatI	CATG	4 cut(s)	162, 215, 249, 385
FokI	GGATG	4 cut(s)	410, 437, 518, 524
FspBI	CTAG	2 cut(s)	180, 479
GlaI	GCGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	155, 516
HapII	CCGG	3 cut(s)	152, 156, 212
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	166, 219, 253, 389
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	3 cut(s)	17, 118, 275
HpaII	CCGG	3 cut(s)	152, 156, 212
HphI	GGTGA	2 cut(s)	55, 86
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	89, 106, 280
Hpy188III	TCNNGA	2 cut(s)	250, 441
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	2 cut(s)	162, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	420, 483
HpySE526I	ACGT	1 cut(s)	451
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	166, 219, 253, 389
HspAI	GCGC	1 cut(s)	229
KasI	GGCGCC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	60, 94
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	165, 169, 225, 488
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	180, 479
MaeII	ACGT	1 cut(s)	451
MalI	GATC	2 cut(s)	62, 96
MboI	GATC	2 cut(s)	60, 94
MboII	GAAGA	2 cut(s)	47, 211
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	127, 269
MmeI	TCCRAC	2 cut(s)	67, 176
MnlI	CCTC	5 cut(s)	5, 18, 124, 415, 465
MroXI	GAANNNNTTC	2 cut(s)	42, 175
MseI	TTAA	2 cut(s)	240, 258
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	3 cut(s)	152, 156, 212
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	310
NarI	GGCGCC	1 cut(s)	229
NdeII	GATC	2 cut(s)	60, 94
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	166, 219, 253, 389
NlaIV	GGNNCC	2 cut(s)	6, 230
NspI	RCATGY	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	372
PagI	TCATGA	1 cut(s)	249
PdmI	GAANNNNTTC	2 cut(s)	42, 175
PfeI	GAWTC	1 cut(s)	17
PleI	GAGTC	2 cut(s)	126, 269
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	2 cut(s)	126, 269
PspN4I	GGNNCC	2 cut(s)	6, 230
PsrI	GAACNNNNNNTAC	2 cut(s)	400, 432
RsaI	GTAC	2 cut(s)	137, 563
RsaNI	GTAC	2 cut(s)	136, 562
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	240, 258
Sau3AI	GATC	2 cut(s)	60, 94
ScaI	AGTACT	1 cut(s)	563
SchI	GAGTC	2 cut(s)	127, 269
SetI	ASST	8 cut(s)	58, 238, 249, 286, 432, 454, 480, 484
SfaNI	GCATC	1 cut(s)	496
SfoI	GGCGCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SsiI	CCGC	2 cut(s)	128, 509
SspDI	GGCGCC	1 cut(s)	228
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	180, 479
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	454
TatI	WGTACW	2 cut(s)	135, 561
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	240, 258
Tru9I	TTAA	2 cut(s)	240, 258
TspDTI	ATGAA	4 cut(s)	48, 236, 266, 558
TspGWI	ACGGA	1 cut(s)	423
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	42, 175
XspI	CTAG	2 cut(s)	180, 479
ZrmI	AGTACT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.