Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000704.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

48259 .. 49473

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000704.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggctccaagaggggattcttggaggcccaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatagttgcgtcggaaaagatcaaaagtcggacttattgtggagtcgtgtggcggaggagtacaatgctcacaaaccggctggttgcatggatagaacacattctagttgccacgctcgttggaaaaaaataagtccggcatgtatgaagtggcgccaagctcttaacaaggtcaaacactttcaacgaagaagtggggaaaatatggaggacgaggtggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggcagaaacttcaagcatcccggaacaatctcaagatcctacaccccctgaaggagacaacacaagcttgaccacttatgatccacttggcgagacatcttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

157

Amino Acids

18.07

Weight (kDa)

6.1

Isoelectric Point (pI)

72.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	5 cut(s)	68, 290, 303, 395, 440
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	260, 378
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	56, 236, 432
AluI	AGCT	3 cut(s)	56, 236, 432
Alw26I	GTCTC	2 cut(s)	414, 452
AlwI	GGATC	5 cut(s)	68, 290, 303, 395, 440
AoxI	GGCC	1 cut(s)	26
Asp700I	GAANNNNTTC	2 cut(s)	42, 175
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	3 cut(s)	55, 86, 301
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	228
BccI	CCATC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	414, 452
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	6, 230, 297
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse118I	RCCGGY	1 cut(s)	151
BseGI	GGATG	2 cut(s)	381, 474
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseRI	GAGGAG	2 cut(s)	146, 337
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	152, 212, 386
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	414, 452
BsnI	GGCC	1 cut(s)	28
Bsp143I	GATC	5 cut(s)	60, 94, 295, 400, 445
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	6, 230, 297
BspPI	GGATC	5 cut(s)	68, 290, 303, 395, 440
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	5 cut(s)	60, 94, 295, 400, 445
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	381, 474
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	5 cut(s)	63, 97, 298, 403, 448
BstMAI	GTCTC	2 cut(s)	414, 452
BstMBI	GATC	5 cut(s)	60, 94, 295, 400, 445
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	295, 400
BstYI	RGATCY	2 cut(s)	295, 400
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	381, 474
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	2 cut(s)	163, 216
CviJI	RGCY	6 cut(s)	5, 28, 56, 155, 236, 432
CviKI_1	RGCY	6 cut(s)	5, 28, 56, 155, 236, 432
CviQI	GTAC	1 cut(s)	136
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	5 cut(s)	62, 96, 297, 402, 447
DpnII	GATC	5 cut(s)	60, 94, 295, 400, 445
EciI	GGCGGA	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	2 cut(s)	166, 219
FaiI	YATR	5 cut(s)	164, 217, 221, 281, 444
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 92, 124
FatI	CATG	2 cut(s)	162, 215
FokI	GGATG	1 cut(s)	368
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	3 cut(s)	152, 212, 386
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	166, 219
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	2 cut(s)	54, 430
HinfI	GANTC	2 cut(s)	17, 118
HpaII	CCGG	3 cut(s)	152, 212, 386
HphI	GGTGA	3 cut(s)	55, 86, 301
Hpy188I	TCNGA	2 cut(s)	89, 106
Hpy188III	TCNNGA	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	166, 219
HspAI	GCGC	1 cut(s)	229
KasI	GGCGCC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	60, 94, 295, 400, 445
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	141, 165, 225, 399, 426
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	180
MalI	GATC	5 cut(s)	62, 96, 297, 402, 447
MboI	GATC	5 cut(s)	60, 94, 295, 400, 445
MboII	GAAGA	2 cut(s)	47, 276
MflI	RGATCY	2 cut(s)	295, 400
MluCI	AATT	2 cut(s)	303, 354
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	3 cut(s)	67, 84, 176
MnlI	CCTC	8 cut(s)	5, 18, 124, 277, 283, 315, 330, 358
MroXI	GAANNNNTTC	2 cut(s)	42, 175
MseI	TTAA	1 cut(s)	240
MspI	CCGG	3 cut(s)	152, 212, 386
MspR9I	CCNGG	1 cut(s)	386
NarI	GGCGCC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	5 cut(s)	60, 94, 295, 400, 445
NlaIII	CATG	2 cut(s)	166, 219
NlaIV	GGNNCC	3 cut(s)	6, 230, 297
NspI	RCATGY	1 cut(s)	219
PdmI	GAANNNNTTC	2 cut(s)	42, 175
PfeI	GAWTC	1 cut(s)	17
PfoI	TCCNGGA	1 cut(s)	384
PleI	GAGTC	1 cut(s)	126
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	6, 230, 297
PspPI	GGNCC	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	295, 400
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	60, 94, 295, 400, 445
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	5 cut(s)	58, 238, 249, 294, 434
SfaNI	GCATC	1 cut(s)	390
SfoI	GGCGCC	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	2 cut(s)	303, 354
SsiI	CCGC	1 cut(s)	128
SspDI	GGCGCC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	2 cut(s)	303, 354
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	48, 236
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	42, 175
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.