Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

72313618 .. 72314468

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G045390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATAGAACACATTCTATTTGCCACGCTCGTTGGAAGAAAATAAGTCCGGCATGTATGAAGTGGCGCCAAGCTCTTAACAAGGTCGAACACTTTCAACGAAGAAGCGGCAAAAATATGGAGAAAGAGCTCATGAATGTTAAATCAACGTACTACGACTCGGAAGGTTGTGATTTTGTGTTTGAGCATTGTTGGCAATACTTGAAAAATACAGAAAAGTTTGGAAAAAAGCCATCAATGGAAAACACCCACTTTAGTGTTCCTAATCATGTCAACTTGGATGATGATGGAACACCCACTACTAAGGATGAGCTTCCCTCATCAAGAAAGGCATGTCGTCAAGGACAGAAAGCTCATAAGCTAGCTAAGAAAAAAGGCAATAAGCAGGATGCGGATAGCCTACGAGTTCAAATGCAGAAATGTTATGAACAAACAGAACGTGAGTACCAACAAAGGCAAAGACAGTTTGAGGAAGGTCAACTAATTGACCAACGCGCTGAGGATGCTAGCACGATGCAGGTGGATCCATCAATTTTCACCCCAAGAAAGAGGAGTTATTGGGAGAGGAAGCAACAACAAATAATTGATAAGGAGGCAGAAACTTCAAGTATCCCGGAACAATCTCAAGATCCTACACCCCCTGAAGGAGACAACACAGGCTTGACCACTTATGATCCACTTAGAGAGACATCTTGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

233

Amino Acids

27.43

Weight (kDa)

8.43

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	59 - 194	5.6e-08	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	66
AccII	CGCG	1 cut(s)	495
AciI	CCGC	2 cut(s)	108, 392
AclWI	GGATC	4 cut(s)	518, 531, 623, 668
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	152, 446
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	4 cut(s)	98, 205, 410, 606
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	6 cut(s)	74, 130, 313, 353, 361, 365
AluI	AGCT	6 cut(s)	74, 130, 313, 353, 361, 365
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	642, 680
AlwI	GGATC	4 cut(s)	518, 531, 623, 668
Asp700I	GAANNNNTTC	2 cut(s)	13, 93
AspLEI	GCGC	2 cut(s)	69, 497
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	529
AsuNHI	GCTAGC	2 cut(s)	361, 506
BaeI	ACNNNNGTAYC	2 cut(s)	428, 461
BamHI	GGATCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	498
BccI	CCATC	3 cut(s)	241, 281, 535
BciVI	GTATCC	1 cut(s)	620
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	642, 680
BfaI	CTAG	2 cut(s)	362, 507
BfoI	RGCGCY	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	68, 525
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	3 cut(s)	379, 493, 504
BmtI	GCTAGC	2 cut(s)	365, 510
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	609
BpuMI	CCSGG	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
BseGI	GGATG	4 cut(s)	286, 313, 394, 508
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	565
Bsh1236I	CGCG	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	50, 614
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	2 cut(s)	642, 680
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	523, 628, 673
BspACI	CCGC	2 cut(s)	108, 392
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	68, 525
BspMI	ACCTGC	1 cut(s)	508
BspOI	GCTAGC	2 cut(s)	365, 510
BspPI	GGATC	4 cut(s)	518, 531, 623, 668
BspT107I	GGYRCC	1 cut(s)	66
BssMI	GATC	3 cut(s)	523, 628, 673
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	363, 508
BstDEI	CTNAG	4 cut(s)	303, 366, 498, 680
BstF5I	GGATG	4 cut(s)	286, 313, 394, 508
BstFNI	CGCG	1 cut(s)	495
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 497
BstKTI	GATC	3 cut(s)	526, 631, 676
BstMAI	GTCTC	2 cut(s)	642, 680
BstMBI	GATC	3 cut(s)	523, 628, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 503
BstNSI	RCATGY	2 cut(s)	57, 336
BstSCI	CCNGG	1 cut(s)	612
BstUI	CGCG	1 cut(s)	495
BstX2I	RGATCY	2 cut(s)	523, 628
BstYI	RGATCY	2 cut(s)	523, 628
BsuI	GTATCC	1 cut(s)	620
BtsCI	GGATG	4 cut(s)	286, 313, 394, 508
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	363, 508
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	2 cut(s)	69, 497
Csp6I	GTAC	2 cut(s)	151, 445
CspCI	CAANNNNNGTGG	2 cut(s)	14, 49
CviAII	CATG	4 cut(s)	54, 133, 269, 333
CviJI	RGCY	9 cut(s)	74, 130, 232, 313, 353, 361, 365, 399, 660
CviKI_1	RGCY	9 cut(s)	74, 130, 232, 313, 353, 361, 365, 399, 660
CviQI	GTAC	2 cut(s)	151, 445
DdeI	CTNAG	4 cut(s)	303, 366, 498, 680
DinI	GGCGCC	1 cut(s)	68
DpnI	GATC	3 cut(s)	525, 630, 675
DpnII	GATC	3 cut(s)	523, 628, 673
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	68
EheI	GGCGCC	1 cut(s)	68
FaeI	CATG	4 cut(s)	57, 136, 272, 336
FatI	CATG	4 cut(s)	53, 132, 268, 332
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	4 cut(s)	293, 320, 401, 515
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	2 cut(s)	362, 507
GlaI	GCGC	2 cut(s)	68, 496
GluI	GCNGC	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	70
HapII	CCGG	2 cut(s)	50, 614
HhaI	GCGC	2 cut(s)	69, 497
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	57, 136, 272, 336
Hin6I	GCGC	2 cut(s)	67, 495
HinP1I	GCGC	2 cut(s)	67, 495
HincII	GTYRAC	2 cut(s)	274, 479
HindII	GTYRAC	2 cut(s)	274, 479
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	50, 614
HphI	GGTGA	1 cut(s)	529
Hpy166II	GTNNAC	2 cut(s)	274, 479
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	133, 324, 626
Hpy8I	GTNNAC	2 cut(s)	274, 479
HpyAV	CCTTC	3 cut(s)	158, 467, 638
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	2 cut(s)	149, 439
HpyCH4V	TGCA	2 cut(s)	415, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 503
HpyF3I	CTNAG	4 cut(s)	303, 366, 498, 680
HpySE526I	ACGT	2 cut(s)	149, 439
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	57, 136, 272, 336
HspAI	GCGC	2 cut(s)	67, 495
KasI	GGCGCC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	523, 628, 673
LpnPI	CCDG	6 cut(s)	63, 371, 503, 627, 642, 654
LweI	GCATC	3 cut(s)	379, 493, 504
MaeI	CTAG	2 cut(s)	362, 507
MaeII	ACGT	2 cut(s)	149, 439
MalI	GATC	3 cut(s)	525, 630, 675
MboI	GATC	3 cut(s)	523, 628, 673
MboII	GAAGA	2 cut(s)	49, 114
MflI	RGATCY	2 cut(s)	523, 628
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	3 cut(s)	483, 531, 582
Mly113I	GGCGCC	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	14
MnlI	CCTC	6 cut(s)	328, 463, 493, 543, 558, 586
MroXI	GAANNNNTTC	2 cut(s)	13, 93
MseI	TTAA	2 cut(s)	78, 141
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	2 cut(s)	50, 614
MspR9I	CCNGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	193, 503
NarI	GGCGCC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	3 cut(s)	523, 628, 673
NheI	GCTAGC	2 cut(s)	361, 506
NlaIII	CATG	4 cut(s)	57, 136, 272, 336
NlaIV	GGNNCC	2 cut(s)	68, 525
NspI	RCATGY	2 cut(s)	57, 336
OliI	CACNNNNGTG	1 cut(s)	255
PagI	TCATGA	1 cut(s)	132
PaqCI	CACCTGC	1 cut(s)	508
PdmI	GAANNNNTTC	2 cut(s)	13, 93
PfoI	TCCNGGA	1 cut(s)	612
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	152
PluTI	GGCGCC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	68, 525
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PsuI	RGATCY	2 cut(s)	523, 628
RsaI	GTAC	2 cut(s)	152, 446
RsaNI	GTAC	2 cut(s)	151, 445
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	78, 141
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	3 cut(s)	523, 628, 673
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	3 cut(s)	379, 493, 504
SfoI	GGCGCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
Sse9I	AATT	3 cut(s)	483, 531, 582
SsiI	CCGC	2 cut(s)	108, 392
SspDI	GGCGCC	1 cut(s)	66
SspMI	CTAG	2 cut(s)	362, 507
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	2 cut(s)	152, 442
TaqI	TCGA	1 cut(s)	87
TasI	AATT	3 cut(s)	483, 531, 582
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	78, 141
Tru9I	TTAA	2 cut(s)	78, 141
TspDTI	ATGAA	3 cut(s)	74, 149, 441
XceI	RCATGY	2 cut(s)	57, 336
XmnI	GAANNNNTTC	2 cut(s)	13, 93
XspI	CTAG	2 cut(s)	362, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.