Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004088.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

25148 .. 26396

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004088.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgcggcctgactcgctggaagacttgggtgggcagcacacgcagaagggagaacaggggaggaggaagacgcgccaacttgcgctggagagagaaaaagcacatgcaggccgtctgctgcagtgggccccgcaactcgattctgtctgctgccgaccgttggcacactcaacgctcatgaatgttaaatcaacgtactacgactcggaaggttgcgcttttgtgtttgagcattgttggcaatacttgaaaaatacggaaaagtttgggaaaatgccatcaatggataacacctactttaatgttcctaatcatgtcaacttggatgacgatggaacacccactactgaggatgagcttccgtcatcaagaaaggcacgtcctcaaggacagaaagcacagaagctagctaagaaaaaaagcaataagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

143

Amino Acids

16.32

Weight (kDa)

9.06

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	4, 131
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	250
AjiI	CACGTC	1 cut(s)	380
AluBI	AGCT	3 cut(s)	358, 406, 410
AluI	AGCT	3 cut(s)	358, 406, 410
AoxI	GGCC	3 cut(s)	5, 109, 126
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	34, 118, 150
AspLEI	GCGC	3 cut(s)	75, 85, 218
AspS9I	GGNCC	2 cut(s)	126, 127
AsuNHI	GCTAGC	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	27, 74
BbvI	GCAGC	3 cut(s)	46, 105, 137
BccI	CCATC	2 cut(s)	286, 326
BceAI	ACGGC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	119
BisI	GCNGC	4 cut(s)	5, 35, 119, 151
BlsI	GCNGC	4 cut(s)	6, 36, 120, 152
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	126, 127
BmiI	GGNNCC	2 cut(s)	128, 129
BmtI	GCTAGC	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	27, 74
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	331, 358
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	46, 105, 137
Bsh1236I	CGCG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	7, 111, 128
BsiEI	CGRYCG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	3 cut(s)	7, 111, 128
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	4, 131
BspANI	GGCC	3 cut(s)	7, 111, 128
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	128, 129
BspMAI	CTGCAG	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	109, 408
BstDEI	CTNAG	2 cut(s)	348, 411
BstF5I	GGATG	2 cut(s)	331, 358
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	3 cut(s)	75, 85, 218
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 40, 238
BstNSI	RCATGY	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	3 cut(s)	46, 105, 137
BstV2I	GAAGAC	2 cut(s)	27, 74
BsuRI	GGCC	3 cut(s)	7, 111, 128
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	331, 358
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	109, 408
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	3 cut(s)	75, 85, 218
Cfr13I	GGNCC	2 cut(s)	126, 127
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	104, 178, 314
CviJI	RGCY	6 cut(s)	7, 111, 128, 358, 406, 410
CviKI_1	RGCY	6 cut(s)	7, 111, 128, 358, 406, 410
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	348, 411
Eco24I	GRGCYC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	3 cut(s)	107, 181, 317
FaiI	YATR	3 cut(s)	105, 179, 315
FatI	CATG	3 cut(s)	103, 177, 313
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	5, 35, 119, 151
FokI	GGATG	2 cut(s)	338, 365
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	5, 35, 119, 151
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	3 cut(s)	74, 84, 217
GluI	GCNGC	4 cut(s)	5, 35, 119, 151
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	7, 111, 128
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	3 cut(s)	75, 85, 218
Hin1II	CATG	3 cut(s)	107, 181, 317
Hin6I	GCGC	3 cut(s)	73, 83, 216
HinP1I	GCGC	3 cut(s)	73, 83, 216
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	11, 140, 203
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	178, 369
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	40, 203
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	2 cut(s)	194, 379
HpyCH4V	TGCA	2 cut(s)	107, 121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 40, 238
HpyF3I	CTNAG	2 cut(s)	348, 411
HpySE526I	ACGT	2 cut(s)	194, 379
Hsp92II	CATG	3 cut(s)	107, 181, 317
HspAI	GCGC	3 cut(s)	73, 83, 216
LpnPI	CCDG	5 cut(s)	2, 21, 41, 71, 93
Lsp1109I	GCAGC	3 cut(s)	46, 105, 137
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	194, 379
MboII	GAAGA	2 cut(s)	32, 79
MhlI	GDGCHC	1 cut(s)	130
MlyI	GAGTC	2 cut(s)	5, 197
MnlI	CCTC	4 cut(s)	54, 57, 343, 393
MseI	TTAA	2 cut(s)	186, 300
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	13, 40, 238
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	3 cut(s)	107, 181, 317
NlaIV	GGNNCC	2 cut(s)	128, 129
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	6, 36, 120, 152
PleI	GAGTC	2 cut(s)	5, 197
PpsI	GAGTC	2 cut(s)	5, 197
PspN4I	GGNNCC	2 cut(s)	128, 129
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	126, 127
PsrI	GAACNNNNNNTAC	2 cut(s)	328, 360
PstI	CTGCAG	1 cut(s)	123
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	186, 300
SatI	GCNGC	4 cut(s)	5, 35, 119, 151
Sau96I	GGNCC	2 cut(s)	126, 127
SchI	GAGTC	2 cut(s)	5, 197
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	7 cut(s)	197, 214, 296, 360, 382, 408, 412
SfcI	CTRYAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
SsiI	CCGC	2 cut(s)	4, 131
SspMI	CTAG	1 cut(s)	407
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	2 cut(s)	197, 382
TaqI	TCGA	1 cut(s)	138
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	186, 300
Tru9I	TTAA	2 cut(s)	186, 300
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	3 cut(s)	34, 118, 150
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	2 cut(s)	272, 351
TspRI	CASTG	1 cut(s)	128
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.