Rorug04G0175800

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
30916106 .. 30919732
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0175800.1

Sequence Viewer

Length: 390 bp
ATGCAGAATGGCTATGAAAATGCAAGAAGGTTTCTCCAGCACGGTCTTAGACGCGGGCAAAACTCGGTGGAAGAGAACATATCAAGCGGAAGCTTCTGTCATCACTGGTTAGTGGTTAGTTACTTGGTTCAAGAGTGTAAGCCTGTGAATCATGGGAGCAGTTTTGTCTGCCAATACCAAATTCAAAGGAGTTGTGCTGCAACAAGATGGCCGTTGGGGTGCTCAGCTCTGTGGCAATCAGAGTCCTGTTATTTGGCTTGGAACTTGCTGCCATGGCTTATGAATTATGATAGTGCGGCATTGAAGCTTCGCAGAAGAGAGTCCCAAAGGAACTTTGCACGGACCAAGGTCACAAATCAAGAGCTAGCAATACTGTCAGAGCCTCTATAG

Protein Analysis

129

Amino Acids

14.97

Weight (kDa)

9.05

Isoelectric Point (pI)

76.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 3 cut(s) 54, 87, 296
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 180
AgsI TTSAA 3 cut(s) 131, 185, 304
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 4 cut(s) 93, 227, 307, 364
AluI AGCT 4 cut(s) 93, 227, 307, 364
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 197, 268
ApoI RAATTY 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 342
AsuNHI GCTAGC 1 cut(s) 364
AvaII GGWCC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 184, 255
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 196
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 386
BisI GCNGC 3 cut(s) 198, 269, 297
BlpI GCTNAGC 1 cut(s) 223
BlsI GCNGC 3 cut(s) 199, 270, 298
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmtI GCTAGC 1 cut(s) 368
BoxI GACNNNNGTC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 272, 345
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 272, 345
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 2 cut(s) 184, 255
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 224
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1720I GCTNAGC 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 3 cut(s) 54, 87, 296
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 236
BspFNI CGCG 1 cut(s) 54
BspOI GCTAGC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 272, 345
BssT1I CCWWGG 2 cut(s) 272, 345
Bst4CI ACNGT 2 cut(s) 44, 375
Bst6I CTCTTC 2 cut(s) 66, 310
BstC8I GCNNGC 2 cut(s) 56, 366
BstDEI CTNAG 2 cut(s) 47, 223
BstDSI CCRYGG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstPAI GACNNNNGTC 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 184, 255
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 56, 366
Cfr13I GGNCC 1 cut(s) 342
CseI GACGC 1 cut(s) 60
CviAII CATG 2 cut(s) 152, 273
DdeI CTNAG 2 cut(s) 47, 223
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 66, 310
EarI CTCTTC 2 cut(s) 66, 310
Eco130I CCWWGG 2 cut(s) 272, 345
Eco47I GGWCC 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 272, 345
ErhI CCWWGG 2 cut(s) 272, 345
FaeI CATG 2 cut(s) 155, 276
FaiI YATR 7 cut(s) 15, 80, 153, 274, 281, 288, 388
FaqI GGGAC 1 cut(s) 307
FatI CATG 2 cut(s) 151, 272
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 198, 269, 297
Fsp4HI GCNGC 3 cut(s) 198, 269, 297
FspBI CTAG 1 cut(s) 365
GluI GCNGC 3 cut(s) 198, 269, 297
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 211
HgaI GACGC 1 cut(s) 60
Hin1II CATG 2 cut(s) 155, 276
HindIII AAGCTT 2 cut(s) 91, 305
HinfI GANTC 3 cut(s) 148, 242, 320
Hpy188I TCNGA 2 cut(s) 241, 379
Hpy188III TCNNGA 2 cut(s) 131, 359
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 2 cut(s) 44, 375
HpyCH4V TGCA 4 cut(s) 4, 23, 200, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 47, 223
Hsp92II CATG 2 cut(s) 155, 276
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 50, 91, 156, 259
Lsp1109I GCAGC 2 cut(s) 184, 255
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 119, 349
MboII GAAGA 2 cut(s) 83, 327
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 2 cut(s) 180, 283
MlyI GAGTC 2 cut(s) 251, 329
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 274
NcoI CCATGG 1 cut(s) 272
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 2 cut(s) 155, 276
NmuCI GTSAC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 3 cut(s) 199, 270, 298
PleI GAGTC 2 cut(s) 250, 328
PpsI GAGTC 2 cut(s) 250, 328
PshAI GACNNNNGTC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 342
SatI GCNGC 3 cut(s) 198, 269, 297
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 2 cut(s) 251, 329
SduI GDGCHC 1 cut(s) 224
SetI ASST 6 cut(s) 32, 95, 229, 309, 351, 366
SfcI CTRYAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 342
Sse9I AATT 2 cut(s) 180, 283
SsiI CCGC 3 cut(s) 54, 87, 296
SspMI CTAG 1 cut(s) 365
StyI CCWWGG 2 cut(s) 272, 345
TaaI ACNGT 2 cut(s) 44, 375
TasI AATT 2 cut(s) 180, 283
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 148
TscAI CASTG 1 cut(s) 110
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 197, 268
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 30, 296
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 1 cut(s) 180
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.