MD00G1014200.v1.1

Cleavage and polyadenylation specificity factor subunit 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000386
Physical Location & Seq
Forward (+)
1753096 .. 1755985
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1014200.v1.1.491

Sequence Viewer

Length: 288 bp
ATGATATATTTTGCTCTTTTTATGTCCCCATATGCGCCTTGCCATGCACTTGGACAGTTTTTCCACGTCCAGTGCATACAATCGATGCTTCATATCATCCCAGGAAAACCTCGCATCTCGCCCATCTTCAGAAGCCTTTGCAAGTCCATGTGCGTAGGTCTTCGGAGGTACTCTCTGTCGTGTACAAAGATTCGACTGCTTTGCAAAATCTCATCAGGGCCTCAAGAATGGTTGATTTCCCCATCCTCGTTATCTCATCCACTTGGTCTGCAGATGCTCCATACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

9.64

Isoelectric Point (pI)

67.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 112
AfaI GTAC 2 cut(s) 170, 184
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 100
AoxI GGCC 1 cut(s) 218
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 152
BccI CCATC 2 cut(s) 131, 250
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 3 cut(s) 75, 123, 264
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpuEI CTTGAG 1 cut(s) 207
Bsa29I ATCGAT 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 96, 242, 256
BseNI ACTGG 1 cut(s) 70
BshFI GGCC 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 83
BslFI GGGAC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 182
BspANI GGCC 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 83
BspMAI CTGCAG 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 182
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 285
BstF5I GGATG 3 cut(s) 96, 242, 256
BstHHI GCGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 269
BstSNI TACGTA 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 83
BsuRI GGCC 1 cut(s) 220
BsuTUI ATCGAT 1 cut(s) 83
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 3 cut(s) 96, 242, 256
BtsIMutI CAGTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 218
ClaI ATCGAT 1 cut(s) 83
Csp6I GTAC 2 cut(s) 169, 183
CviAII CATG 2 cut(s) 44, 148
CviJI RGCY 2 cut(s) 135, 220
CviKI_1 RGCY 2 cut(s) 135, 220
CviQI GTAC 2 cut(s) 169, 183
Eco105I TACGTA 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 47, 151
FaiI YATR 9 cut(s) 7, 23, 31, 33, 45, 77, 93, 149, 282
FaqI GGGAC 1 cut(s) 10
FatI CATG 2 cut(s) 43, 147
FauNDI CATATG 1 cut(s) 31
FokI GGATG 3 cut(s) 83, 229, 243
GlaI GCGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 220
HhaI GCGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 47, 151
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 131, 165
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 2 cut(s) 66, 284
HpyCH4V TGCA 5 cut(s) 47, 75, 141, 204, 271
HpySE526I ACGT 2 cut(s) 66, 284
Hsp92II CATG 2 cut(s) 47, 151
HspAI GCGC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 4 cut(s) 83, 87, 114, 201
LweI GCATC 3 cut(s) 75, 123, 264
MaeII ACGT 2 cut(s) 66, 284
MboII GAAGA 2 cut(s) 118, 152
MnlI CCTC 4 cut(s) 120, 159, 231, 256
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
NdeI CATATG 1 cut(s) 31
NlaIII CATG 2 cut(s) 47, 151
PfeI GAWTC 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 273
RsaI GTAC 2 cut(s) 170, 184
RsaNI GTAC 2 cut(s) 169, 183
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 102
SetI ASST 5 cut(s) 69, 112, 160, 170, 287
SfaNI GCATC 3 cut(s) 75, 123, 264
SfcI CTRYAG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SnaBI TACGTA 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 2 cut(s) 69, 287
TaqI TCGA 2 cut(s) 83, 193
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 1 cut(s) 190
TscAI CASTG 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.