Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001159.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

228330 .. 228982

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001159.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 524 bp

ggaaggccaccgaagatatagccttgtgcgtagctgtagttaccgttggtgaagacggttctaagggtactagtcaagagaaaaaaaaattgtgggagcgtatagatgaagtatacgagacttgcaagcctcccggaggcgtggttagattgggaggagggtgtgacggtcgttggaaaaagattacaccggcatgccaaagatggcgtcaagctcttaacaaagcggcacttcttcaaggaagtggtgataacgccaccgatgaggaattacaagctaagtcaatatatcgtaccttagctaaagtagaggagtttgcgtttgagcattgttggccaatattaaaggatacaaaaaagtttagcaatcctccgggcatgaatgtcggtagctcaagttttcctacctctatcaacttagaggacgactgcactcccgcgagtgactccccaagctcttcaaatgtgcatgcacgccccccaagtcaaaaagctcagaaggctgctaagaaaaaatccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

173

Amino Acids

18.82

Weight (kDa)

8.88

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AccII	CGCG	1 cut(s)	439
AciI	CCGC	2 cut(s)	226, 437
AcoI	YGGCCR	1 cut(s)	334
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	69, 294
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	238, 461
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	7 cut(s)	34, 214, 277, 301, 392, 455, 493
AluI	AGCT	7 cut(s)	34, 214, 277, 301, 392, 455, 493
Alw26I	GTCTC	1 cut(s)	112
AoxI	GGCC	2 cut(s)	5, 334
ApeKI	GCWGC	1 cut(s)	502
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AsuC2I	CCSGG	2 cut(s)	134, 374
AsuHPI	GGTGA	2 cut(s)	61, 259
BalI	TGGCCA	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	1 cut(s)	519
BciVI	GTATCC	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	134, 374
BcoDI	GTCTC	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	2 cut(s)	227, 503
BlsI	GCNGC	2 cut(s)	228, 504
Bme1390I	CCNGG	3 cut(s)	134, 374, 519
BmrFI	CCNGG	3 cut(s)	134, 374, 519
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	134, 374
BsaHI	GRCGYC	1 cut(s)	207
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 304, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	508
BseRI	GAGGAG	2 cut(s)	170, 325
BseXI	GCAGC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	7, 336
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	134, 190, 373
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	7, 336
BspACI	CCGC	2 cut(s)	226, 437
BspANI	GGCC	2 cut(s)	7, 336
BspCNI	CTCAG	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	189
BssNAI	GTATAC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	207
Bst1107I	GTATAC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	45, 58, 169
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	127, 195, 470, 474
BstDEI	CTNAG	6 cut(s)	62, 278, 297, 417, 494, 506
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	439
BstMAI	GTCTC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 499
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	2 cut(s)	197, 472
BstSCI	CCNGG	3 cut(s)	132, 372, 517
BstSFI	CTRYAG	1 cut(s)	35
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	59
BstZ17I	GTATAC	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	7, 336
Cac8I	GCNNGC	4 cut(s)	127, 195, 470, 474
Cfr10I	RCCGGY	1 cut(s)	189
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	68, 293
CviAII	CATG	3 cut(s)	194, 378, 469
CviQI	GTAC	2 cut(s)	68, 293
DdeI	CTNAG	6 cut(s)	62, 278, 297, 417, 494, 506
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	517
FaeI	CATG	3 cut(s)	197, 381, 472
FaiI	YATR	7 cut(s)	19, 103, 114, 195, 288, 379, 470
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	3 cut(s)	193, 377, 468
FauI	CCCGC	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	227, 503
Fsp4HI	GCNGC	2 cut(s)	227, 503
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	2 cut(s)	227, 503
HaeIII	GGCC	2 cut(s)	7, 336
HapII	CCGG	3 cut(s)	134, 190, 373
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	197, 381, 472
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	3 cut(s)	134, 190, 373
HphI	GGTGA	2 cut(s)	61, 259
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	497
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	3 cut(s)	45, 58, 169
HpyCH4V	TGCA	4 cut(s)	125, 431, 468, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 499
HpyF3I	CTNAG	6 cut(s)	62, 278, 297, 417, 494, 506
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	197, 381, 472
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	4 cut(s)	147, 203, 386, 504
Lsp1109I	GCAGC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	39, 163, 442
MboII	GAAGA	4 cut(s)	25, 64, 226, 449
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	2 cut(s)	88, 268
MluNI	TGGCCA	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	9 cut(s)	130, 140, 148, 151, 258, 303, 380, 414, 417
Mox20I	TGGCCA	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	336
MseI	TTAA	2 cut(s)	218, 343
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	336
MspI	CCGG	3 cut(s)	134, 190, 373
MspR9I	CCNGG	3 cut(s)	134, 374, 519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	333, 499
NciI	CCSGG	2 cut(s)	134, 374
NlaIII	CATG	3 cut(s)	197, 381, 472
NmuCI	GTSAC	2 cut(s)	163, 442
NspI	RCATGY	2 cut(s)	197, 472
PaeI	GCATGC	2 cut(s)	197, 472
PciSI	GCTCTTC	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	228, 504
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
RsaI	GTAC	2 cut(s)	69, 294
RsaNI	GTAC	2 cut(s)	68, 293
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	218, 343
SatI	GCNGC	2 cut(s)	227, 503
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	3 cut(s)	134, 374, 519
SfcI	CTRYAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SpeI	ACTAGT	1 cut(s)	70
SphI	GCATGC	2 cut(s)	197, 472
Sse9I	AATT	2 cut(s)	88, 268
SsiI	CCGC	2 cut(s)	226, 437
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	132, 372, 517
TaaI	ACNGT	3 cut(s)	45, 58, 169
TasI	AATT	2 cut(s)	88, 268
TauI	GCSGC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	218, 343
Tru9I	TTAA	2 cut(s)	218, 343
TseFI	GTSAC	2 cut(s)	163, 442
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	2 cut(s)	163, 442
TspDTI	ATGAA	2 cut(s)	122, 394
XagI	CCTNNNNNAGG	1 cut(s)	134
XceI	RCATGY	2 cut(s)	197, 472
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.