Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001838.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

10580 .. 11385

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001838.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggctcctagaaaggattcttggaggcacaatgaagaagttattctttgccgagcttggatcacagttggtggtgattgtgctgtcggaaccgatcaaacgtcggatttattatggaatcgtattgcggaggagtacaatgcacacaaaccgacggattgtgtaactagaacaccttctagttgtaaggctcgttggaaaaaaatcaatccagcatgtatgaagtggcggcaagctcttatcaaggtcgagacttttcaacgacgaagcggtaaaaatatggaggacgagctcatgaatgttaagtcgacatactacgacatggaaggtaaagatttcattggaacaccgacaaatgaggagggtgccacttcatcaaggaaggcacgtcctaaaggacagaaagctcataagctagctaagcaaaaaggctcccaacaggatgcgggtgacctacgaaaggccgaaagcaaatgcaacaatttcaagaacaatgcgagcgtgagtaccaacaaaggcaacaacaattcgaggaaggtcaacgacttgagcaacgcgctgaagatgcccgcacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

192

Amino Acids

21.67

Weight (kDa)

9.67

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	308
AccII	CGCG	1 cut(s)	557
AciI	CCGC	5 cut(s)	128, 229, 270, 446, 570
AclWI	GGATC	1 cut(s)	68
AfaI	GTAC	2 cut(s)	137, 508
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	260, 487
AjiI	CACGTC	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	6 cut(s)	56, 236, 292, 407, 415, 419
AluI	AGCT	6 cut(s)	56, 236, 292, 407, 415, 419
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	462
Asp700I	GAANNNNTTC	3 cut(s)	16, 42, 175
AspLEI	GCGC	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	86, 461
AsuNHI	GCTAGC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	4 cut(s)	9, 168, 180, 416
BisI	GCNGC	1 cut(s)	230
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	389
BmiI	GGNNCC	4 cut(s)	6, 91, 367, 433
BmsI	GCATC	2 cut(s)	433, 555
BmtI	GCTAGC	1 cut(s)	419
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseRI	GAGGAG	2 cut(s)	146, 374
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	1 cut(s)	464
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	60, 94
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	5 cut(s)	128, 229, 270, 446, 570
BspANI	GGCC	1 cut(s)	464
BspFNI	CGCG	1 cut(s)	557
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	4 cut(s)	6, 91, 367, 433
BspOI	GCTAGC	1 cut(s)	419
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	365
BssMI	GATC	2 cut(s)	60, 94
Bst4CI	ACNGT	1 cut(s)	67
BstC8I	GCNNGC	4 cut(s)	234, 417, 499, 570
BstDEI	CTNAG	1 cut(s)	420
BstEII	GGTNACC	1 cut(s)	449
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	2 cut(s)	63, 97
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	60, 94
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 565
BstNSI	RCATGY	1 cut(s)	219
BstPI	GGTNACC	1 cut(s)	449
BstUI	CGCG	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	464
BtrI	CACGTC	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	4 cut(s)	234, 417, 499, 570
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	136, 507
CviAII	CATG	3 cut(s)	216, 295, 322
CviQI	GTAC	2 cut(s)	136, 507
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	62, 96
DpnII	GATC	2 cut(s)	60, 94
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoO65I	GGTNACC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	3 cut(s)	219, 298, 325
FaiI	YATR	8 cut(s)	115, 217, 221, 281, 296, 313, 323, 411
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	3 cut(s)	215, 294, 321
FauI	CCCGC	2 cut(s)	439, 577
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	4 cut(s)	9, 168, 180, 416
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	3 cut(s)	219, 298, 325
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	2 cut(s)	309, 541
HindII	GTYRAC	2 cut(s)	309, 541
HinfI	GANTC	2 cut(s)	17, 118
HphI	GGTGA	2 cut(s)	86, 461
Hpy166II	GTNNAC	2 cut(s)	309, 541
Hpy188I	TCNGA	2 cut(s)	89, 106
Hpy188III	TCNNGA	3 cut(s)	250, 295, 487
Hpy8I	GTNNAC	2 cut(s)	309, 541
Hpy99I	CGWCG	3 cut(s)	106, 157, 267
HpyAV	CCTTC	4 cut(s)	186, 320, 376, 529
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	101, 388
HpyCH4V	TGCA	2 cut(s)	143, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 565
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	101, 388
Hsp92II	CATG	3 cut(s)	219, 298, 325
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	2 cut(s)	60, 94
LmnI	GCTCC	2 cut(s)	10, 437
LpnPI	CCDG	2 cut(s)	225, 425
LweI	GCATC	2 cut(s)	433, 555
MaeI	CTAG	4 cut(s)	9, 168, 180, 416
MaeII	ACGT	2 cut(s)	101, 388
MaeIII	GTNAC	2 cut(s)	163, 449
MalI	GATC	2 cut(s)	62, 96
MboI	GATC	2 cut(s)	60, 94
MboII	GAAGA	2 cut(s)	47, 574
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	481, 526
MmeI	TCCRAC	3 cut(s)	67, 84, 176
MnlI	CCTC	6 cut(s)	18, 124, 277, 352, 355, 525
MroXI	GAANNNNTTC	3 cut(s)	16, 42, 175
MseI	TTAA	1 cut(s)	303
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	421, 565
NdeII	GATC	2 cut(s)	60, 94
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	219, 298, 325
NlaIV	GGNNCC	4 cut(s)	6, 91, 367, 433
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	219
PagI	TCATGA	1 cut(s)	294
PdmI	GAANNNNTTC	3 cut(s)	16, 42, 175
PfeI	GAWTC	2 cut(s)	17, 118
PkrI	GCNGC	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	449
PspN4I	GGNNCC	4 cut(s)	6, 91, 367, 433
RsaI	GTAC	2 cut(s)	137, 508
RsaNI	GTAC	2 cut(s)	136, 507
SacI	GAGCTC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	60, 94
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	433, 555
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	2 cut(s)	481, 526
SsiI	CCGC	5 cut(s)	128, 229, 270, 446, 570
SspMI	CTAG	4 cut(s)	9, 168, 180, 416
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	104, 391
TaqI	TCGA	3 cut(s)	249, 308, 530
TasI	AATT	2 cut(s)	481, 526
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	17, 118
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	5 cut(s)	48, 236, 311, 328, 363
TspGWI	ACGGA	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	458
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	308
XmnI	GAANNNNTTC	3 cut(s)	16, 42, 175
XspI	CTAG	4 cut(s)	9, 168, 180, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.