Rroxscaffold_2G00100340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000386
Physical Location & Seq
Reverse (-)
22199677 .. 22200628
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100340.1

Sequence Viewer

Length: 162 bp
ATGAATGTACGTAGCTCAAGTTTTCCCACCTCTATCAACTTAGAGGACGACCGCACTCCCTCGAGTGACTCCCCAAGCTCTTCAAATGTGTATGCACGCCCCCCGAGTCAAAAAGCTCGGAAGGCTGCTAAAAAAAAAATTCAGGCAAAACGAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.86

Weight (kDa)

10.73

Isoelectric Point (pI)

90.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 1 cut(s) 9
AgsI TTSAA 1 cut(s) 84
AluBI AGCT 3 cut(s) 15, 78, 116
AluI AGCT 3 cut(s) 15, 78, 116
Ama87I CYCGRG 2 cut(s) 61, 103
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 138
AvaI CYCGRG 2 cut(s) 61, 103
BbvI GCAGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmeT110I CYCGRG 2 cut(s) 61, 103
BsaAI YACGTR 1 cut(s) 11
BseXI GCAGC 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 52
BsiHKCI CYCGRG 2 cut(s) 61, 103
BsoBI CYCGRG 2 cut(s) 61, 103
BspACI CCGC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 40
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSNI TACGTA 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 4 cut(s) 15, 78, 116, 125
CviKI_1 RGCY 4 cut(s) 15, 78, 116, 125
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco105I TACGTA 1 cut(s) 11
Eco88I CYCGRG 2 cut(s) 61, 103
FaiI YATR 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 68, 106
Hpy188I TCNGA 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 10
LguI GCTCTTC 1 cut(s) 85
LpnPI CCDG 1 cut(s) 128
Lsp1109I GCAGC 1 cut(s) 112
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 65
MboII GAAGA 1 cut(s) 72
MluCI AATT 1 cut(s) 138
MlyI GAGTC 2 cut(s) 62, 115
MnlI CCTC 3 cut(s) 37, 40, 70
MwoI GCNNNNNNNGC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 2 cut(s) 62, 114
PpsI GAGTC 2 cut(s) 62, 114
Ppu21I YACGTR 1 cut(s) 11
PspXI VCTCGAGB 1 cut(s) 61
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 85
SatI GCNGC 1 cut(s) 126
SchI GAGTC 2 cut(s) 62, 115
SetI ASST 5 cut(s) 13, 17, 32, 80, 118
Sfr274I CTCGAG 1 cut(s) 61
SgeI CNNG 9 cut(s) 30, 73, 75, 87, 108, 115, 117, 129, 155
SlaI CTCGAG 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 16, 61
SmoI CTYRAG 2 cut(s) 16, 61
SnaBI TACGTA 1 cut(s) 11
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 52
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 62
TasI AATT 1 cut(s) 138
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.