Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000110.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

17469 .. 18205

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000110.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggctccaagaggggattcttggaggcacaatgaagaagttattctttgccaagcttggatcaccgttgagggtgatggttgcgttggaaaagatcaaaagtcggacttattgtggagtcgtgtggcggaggagtacaatgctcacaaaccggctggttgcatggatagaacacattctagttgccacgctcgttggaaaaaaataagtccggcatgtatgaagtggctccaaactcctaacaaggtcgaacactttcaacgaagaagcggcgaaaatatggaggaagagctcatgaatgttaaatcaacgtactacgactcggaaggttgtgattttgtgtttgagcattcttggcaatacttgaaaaatacagaaaagtttggaaaaacgccatcaatggaaaacacccactttagtgtttctaatcatgtcaacttggatgacgatggaacacccactactgaggatgagcttccctcatcaagaaaagcacgtagtcaaggacagaaagctcagaagcttatgaacaaacagaacgcgagtaccaacgaaggcaaagacagtttgaggaaggtcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

194

Amino Acids

22.27

Weight (kDa)

6.45

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	542
AciI	CCGC	2 cut(s)	128, 270
AclWI	GGATC	1 cut(s)	68
AfaI	GTAC	3 cut(s)	137, 314, 547
AgsI	TTSAA	2 cut(s)	260, 367
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	5 cut(s)	56, 292, 475, 515, 523
AluI	AGCT	5 cut(s)	56, 292, 475, 515, 523
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	68
Asp700I	GAANNNNTTC	3 cut(s)	42, 175, 255
AsuHPI	GGTGA	2 cut(s)	55, 86
BaeI	ACNNNNGTAYC	2 cut(s)	529, 562
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	3 cut(s)	71, 403, 443
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	6, 230
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BsaAI	YACGTR	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	151
BseGI	GGATG	2 cut(s)	448, 475
BseMII	CTCAG	2 cut(s)	456, 530
BseRI	GAGGAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	152, 212
BsmI	GAATGC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	60, 94
BspACI	CCGC	2 cut(s)	128, 270
BspCNI	CTCAG	2 cut(s)	457, 529
BspFNI	CGCG	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	6, 230
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	2 cut(s)	60, 94
Bst4CI	ACNGT	2 cut(s)	67, 566
Bst6I	CTCTTC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	497
BstDEI	CTNAG	2 cut(s)	465, 516
BstF5I	GGATG	2 cut(s)	448, 475
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	2 cut(s)	63, 97
BstMBI	GATC	2 cut(s)	60, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	219
BstUI	CGCG	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	448, 475
CciI	TCATGA	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	136, 313, 546
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	4 cut(s)	163, 216, 295, 431
CviJI	RGCY	8 cut(s)	5, 56, 155, 229, 292, 475, 515, 523
CviKI_1	RGCY	8 cut(s)	5, 56, 155, 229, 292, 475, 515, 523
CviQI	GTAC	3 cut(s)	136, 313, 546
DdeI	CTNAG	2 cut(s)	465, 516
DpnI	GATC	2 cut(s)	62, 96
DpnII	GATC	2 cut(s)	60, 94
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	4 cut(s)	166, 219, 298, 434
FaiI	YATR	7 cut(s)	164, 217, 221, 281, 296, 432, 527
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 92, 124
FatI	CATG	4 cut(s)	162, 215, 294, 430
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	455, 482
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	271
HapII	CCGG	2 cut(s)	152, 212
Hin1II	CATG	4 cut(s)	166, 219, 298, 434
HincII	GTYRAC	2 cut(s)	436, 580
HindII	GTYRAC	2 cut(s)	436, 580
HindIII	AAGCTT	2 cut(s)	54, 521
HinfI	GANTC	3 cut(s)	17, 118, 320
HpaII	CCGG	2 cut(s)	152, 212
HphI	GGTGA	2 cut(s)	55, 86
Hpy166II	GTNNAC	2 cut(s)	436, 580
Hpy188I	TCNGA	3 cut(s)	106, 325, 519
Hpy188III	TCNNGA	2 cut(s)	295, 486
Hpy8I	GTNNAC	2 cut(s)	436, 580
HpyAV	CCTTC	3 cut(s)	320, 548, 568
HpyCH4III	ACNGT	2 cut(s)	67, 566
HpyCH4IV	ACGT	2 cut(s)	311, 496
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	465, 516
HpySE526I	ACGT	2 cut(s)	311, 496
Hsp92II	CATG	4 cut(s)	166, 219, 298, 434
Kzo9I	GATC	2 cut(s)	60, 94
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	10, 234
LpnPI	CCDG	3 cut(s)	141, 165, 225
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	311, 496
MalI	GATC	2 cut(s)	62, 96
MboI	GATC	2 cut(s)	60, 94
MboII	GAAGA	3 cut(s)	47, 276, 299
MhlI	GDGCHC	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	127, 314
MmeI	TCCRAC	3 cut(s)	67, 84, 176
MnlI	CCTC	8 cut(s)	5, 18, 64, 124, 277, 460, 490, 564
MroXI	GAANNNNTTC	3 cut(s)	42, 175, 255
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	2 cut(s)	152, 212
Mva1269I	GAATGC	1 cut(s)	349
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	355
NdeII	GATC	2 cut(s)	60, 94
NlaIII	CATG	4 cut(s)	166, 219, 298, 434
NlaIV	GGNNCC	2 cut(s)	6, 230
NspI	RCATGY	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	417
PagI	TCATGA	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	349
PdmI	GAANNNNTTC	3 cut(s)	42, 175, 255
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	2 cut(s)	126, 314
PpsI	GAGTC	2 cut(s)	126, 314
Ppu21I	YACGTR	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	6, 230
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
RsaI	GTAC	3 cut(s)	137, 314, 547
RsaNI	GTAC	3 cut(s)	136, 313, 546
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	2 cut(s)	60, 94
SchI	GAGTC	2 cut(s)	127, 314
SduI	GDGCHC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	417
SsiI	CCGC	2 cut(s)	128, 270
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	67, 566
TaiI	ACGT	2 cut(s)	314, 499
TaqI	TCGA	1 cut(s)	249
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TspDTI	ATGAA	4 cut(s)	48, 236, 311, 542
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	3 cut(s)	42, 175, 255
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.