FvH4_5g19180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000386
Physical Location & Seq
Forward (+)
11064798 .. 11065917
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19180.t1

Sequence Viewer

Length: 816 bp
ATGTCCAACCCCAAACCTAGAGGAGAGGCTTGGAAAAACCCCGAAGATGTATCGTTGTGCATGGCGGTGGTCGCGGTTGGTGAAGATGGTGACAAAGCTACCGGTCAAGAGAAGAAAAAATTATGGGATCGTATATGGGAAGTGTATGAAGCTTGCAAGCCACCCGGTTCCGTTATTAGATCGGGAGGAGGGTGTGAAGCTCATTGGAGAAAGATTAGGCCGGGTTGCACAAGGTGGCGTGAAGCTCTTACCAAAGCGGAGGCCGCTCACGCAAGTGGTGAAAATGCCACCGAATTGGAAGTGCAAGCTAGGTTGATATATCGTACATTGTTTTTGGGGGAGGAGTTTAAATTTGCGCATTGTTGGTCAATATTAAAGGATACAGAAAAGTTTAGCAAACCTCCGTCTTTGGATGAGGAAATCTCTAGTGGTCCGTCACCTATTGACTTGTCAGGAGAAGATACACCTATTGAGGGAACCCCAAGCCCTTCAAATGTGCATGCACGCCCTCCAGGCCAAAAAGCTCAAAGGGCTGCTAAGAAAAAATGCAAGGAAGATAACACATCTCAACTCTTAGCTCAAATGAAAAGAATTGCGGACCAAGGAGATCGTGATCTCAAACACATACTACAACTTAGGGAGGAGACTAGACTTGCACAAGAACGTGCGGATGATGGAGCCACAATGGTGGTGGATCCATCAAAATTTCCCGCCTCAATTAGGGCTTATTGGGAAAGGAAGCAAGCTATGGTTATTGAGAGGGAGGATCGAACAAACTTACAATGCCGGGTTACACCAACCACTTGCTTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.4

Weight (kDa)

7.56

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 115 - 249 1.9e-10 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
AccBSI CCGCTC 1 cut(s) 266
AccII CGCG 1 cut(s) 74
AciI CCGC 7 cut(s) 65, 74, 257, 264, 596, 668, 711
AclWI GGATC 4 cut(s) 135, 689, 702, 774
AcsI RAATTY 2 cut(s) 350, 704
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 473, 720
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 492
AjnI CCWGG 1 cut(s) 511
AleI CACNNNNGTG 2 cut(s) 273, 686
AluBI AGCT 8 cut(s) 98, 152, 200, 245, 308, 524, 578, 746
AluI AGCT 8 cut(s) 98, 152, 200, 245, 308, 524, 578, 746
Alw26I GTCTC 1 cut(s) 638
AlwI GGATC 4 cut(s) 135, 689, 702, 774
AoxI GGCC 3 cut(s) 218, 261, 514
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 350, 704
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 431, 598
AsuC2I CCSGG 3 cut(s) 165, 222, 788
AsuHPI GGTGA 4 cut(s) 92, 101, 290, 429
AvaII GGWCC 2 cut(s) 431, 598
BamHI GGATCC 1 cut(s) 694
BbvI GCAGC 1 cut(s) 520
BccI CCATC 3 cut(s) 80, 668, 706
BciT130I CCWGG 1 cut(s) 513
BciVI GTATCC 1 cut(s) 373
BcnI CCSGG 3 cut(s) 165, 222, 788
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 4 cut(s) 18, 309, 426, 648
BfuI GTATCC 1 cut(s) 373
BglI GCCNNNNNGGC 1 cut(s) 513
BisI GCNGC 2 cut(s) 264, 534
BlsI GCNGC 2 cut(s) 265, 535
Bme1390I CCNGG 4 cut(s) 165, 222, 513, 788
Bme18I GGWCC 2 cut(s) 431, 598
BmgT120I GGNCC 2 cut(s) 431, 598
BmiI GGNNCC 4 cut(s) 169, 478, 679, 696
BmrFI CCNGG 4 cut(s) 165, 222, 513, 788
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 1 cut(s) 495
BpuMI CCSGG 3 cut(s) 165, 222, 788
BsaBI GATNNNNATC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 720
Bse118I RCCGGY 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 2 cut(s) 418, 676
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 2 cut(s) 473, 720
BseRI GAGGAG 4 cut(s) 36, 201, 356, 656
BseXI GCAGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 3 cut(s) 220, 263, 516
BshTI ACCGGT 1 cut(s) 101
BsiSI CCGG 4 cut(s) 102, 165, 221, 787
BslI CCNNNNNNNGG 2 cut(s) 473, 720
BsmAI GTCTC 1 cut(s) 638
BsnI GGCC 3 cut(s) 220, 263, 516
Bsp143I GATC 6 cut(s) 127, 179, 607, 613, 694, 766
BspACI CCGC 7 cut(s) 65, 74, 257, 264, 596, 668, 711
BspANI GGCC 3 cut(s) 220, 263, 516
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 4 cut(s) 169, 478, 679, 696
BspPI GGATC 4 cut(s) 135, 689, 702, 774
BsrBI CCGCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 6 cut(s) 127, 179, 607, 613, 694, 766
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 513
BstC8I GCNNGC 6 cut(s) 154, 158, 306, 501, 505, 744
BstDEI CTNAG 3 cut(s) 537, 574, 635
BstENI CCTNNNNNAGG 1 cut(s) 718
BstF5I GGATG 2 cut(s) 418, 676
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 6 cut(s) 130, 182, 610, 616, 697, 769
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 6 cut(s) 127, 179, 607, 613, 694, 766
BstMWI GCNNNNNNNGC 5 cut(s) 71, 263, 269, 513, 530
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 4 cut(s) 163, 220, 511, 786
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 520
BstX2I RGATCY 1 cut(s) 694
BstXI CCANNNNNNTGG 2 cut(s) 295, 688
BstYI RGATCY 1 cut(s) 694
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 3 cut(s) 220, 263, 516
BtsCI GGATG 2 cut(s) 418, 676
Cac8I GCNNGC 6 cut(s) 154, 158, 306, 501, 505, 744
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 431, 598
Csp6I GTAC 1 cut(s) 324
CspAI ACCGGT 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 2 cut(s) 61, 500
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 537, 574, 635
DpnI GATC 6 cut(s) 129, 181, 609, 615, 696, 768
DpnII GATC 6 cut(s) 127, 179, 607, 613, 694, 766
DraI TTTAAA 1 cut(s) 349
DraIII CACNNNGTG 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 601
Eco47I GGWCC 2 cut(s) 431, 598
EcoNI CCTNNNNNAGG 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 2 cut(s) 64, 503
FaiI YATR 9 cut(s) 62, 124, 134, 136, 147, 319, 501, 626, 749
FatI CATG 2 cut(s) 60, 499
FauI CCCGC 1 cut(s) 718
Fnu4HI GCNGC 2 cut(s) 264, 534
FokI GGATG 2 cut(s) 425, 683
Fsp4HI GCNGC 2 cut(s) 264, 534
FspBI CTAG 4 cut(s) 18, 309, 426, 648
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 1 cut(s) 357
GluI GCNGC 2 cut(s) 264, 534
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 3 cut(s) 220, 263, 516
HapII CCGG 4 cut(s) 102, 165, 221, 787
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 64, 503
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HindIII AAGCTT 1 cut(s) 150
HpaII CCGG 4 cut(s) 102, 165, 221, 787
HphI GGTGA 4 cut(s) 92, 101, 290, 429
Hpy188I TCNGA 1 cut(s) 815
Hpy188III TCNNGA 4 cut(s) 107, 183, 453, 611
HpyAV CCTTC 1 cut(s) 498
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 8 cut(s) 60, 156, 228, 304, 499, 503, 549, 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 263, 269, 513, 530
HpyF3I CTNAG 3 cut(s) 537, 574, 635
HpySE526I ACGT 1 cut(s) 664
Hsp92II CATG 2 cut(s) 64, 503
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 6 cut(s) 127, 179, 607, 613, 694, 766
LmnI GCTCC 1 cut(s) 677
LpnPI CCDG 7 cut(s) 115, 178, 234, 438, 498, 525, 800
Lsp1109I GCAGC 1 cut(s) 520
MaeI CTAG 4 cut(s) 18, 309, 426, 648
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 3 cut(s) 89, 435, 790
MalI GATC 6 cut(s) 129, 181, 609, 615, 696, 768
MbiI CCGCTC 1 cut(s) 266
MboI GATC 6 cut(s) 127, 179, 607, 613, 694, 766
MboII GAAGA 5 cut(s) 56, 95, 124, 470, 566
MflI RGATCY 1 cut(s) 694
MluCI AATT 6 cut(s) 119, 293, 350, 591, 704, 717
MmeI TCCRAC 1 cut(s) 30
MseI TTAA 2 cut(s) 348, 374
MslI CAYNNNNRTG 3 cut(s) 65, 273, 686
MspI CCGG 4 cut(s) 102, 165, 221, 787
MspR9I CCNGG 4 cut(s) 165, 222, 513, 788
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 5 cut(s) 71, 263, 269, 513, 530
NciI CCSGG 3 cut(s) 165, 222, 788
NdeII GATC 6 cut(s) 127, 179, 607, 613, 694, 766
NlaIII CATG 2 cut(s) 64, 503
NlaIV GGNNCC 4 cut(s) 169, 478, 679, 696
NmuCI GTSAC 2 cut(s) 89, 435
NsbI TGCGCA 1 cut(s) 357
NspI RCATGY 1 cut(s) 503
OliI CACNNNNGTG 2 cut(s) 273, 686
PaeI GCATGC 1 cut(s) 503
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 2 cut(s) 265, 535
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 4 cut(s) 169, 478, 679, 696
PspPI GGNCC 2 cut(s) 431, 598
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 3 cut(s) 65, 273, 686
SaqAI TTAA 2 cut(s) 348, 374
SatI GCNGC 2 cut(s) 264, 534
Sau3AI GATC 6 cut(s) 127, 179, 607, 613, 694, 766
Sau96I GGNCC 2 cut(s) 431, 598
ScrFI CCNGG 4 cut(s) 165, 222, 513, 788
SinI GGWCC 2 cut(s) 431, 598
SmiMI CAYNNNNRTG 3 cut(s) 65, 273, 686
SphI GCATGC 1 cut(s) 503
Sse9I AATT 6 cut(s) 119, 293, 350, 591, 704, 717
SsiI CCGC 7 cut(s) 65, 74, 257, 264, 596, 668, 711
SspI AATATT 1 cut(s) 372
SspMI CTAG 4 cut(s) 18, 309, 426, 648
StyD4I CCNGG 4 cut(s) 163, 220, 511, 786
StyI CCWWGG 1 cut(s) 601
TaiI ACGT 1 cut(s) 667
TaqI TCGA 1 cut(s) 769
TasI AATT 6 cut(s) 119, 293, 350, 591, 704, 717
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 348, 374
Tru9I TTAA 2 cut(s) 348, 374
TseFI GTSAC 2 cut(s) 89, 435
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 2 cut(s) 89, 435
TspDTI ATGAA 3 cut(s) 162, 599, 799
TspGWI ACGGA 3 cut(s) 160, 393, 423
VpaK11BI GGWCC 2 cut(s) 431, 598
XagI CCTNNNNNAGG 1 cut(s) 718
XapI RAATTY 2 cut(s) 350, 704
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XspI CTAG 4 cut(s) 18, 309, 426, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.