Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010503.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

30062 .. 31635

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010503.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgaagtggcgccaagctcttaagaaggtcgaacactttcaacgaagaagcggtgaaaatatggaggatgagctcatgaatgttaaatcaacgtactacgactcggaaggttgcgattttgtgtttgagcattgttggcaatacttgaaaaatacggaaaagtttgggaaaacgccatcaatggaaaacacccactttagtgttcctaatcatgtcaacttggatgacgatggaacaaccactactgaggatgagcttccgtcatcaagaaaagcatgtcctcaaggacagaaagcacagaagctagctaagaaaaaaggcaataagcaggatgcggatgacctacgagttcaaatgcagaaatgttatgaacaaaccgaacgcgagtaccaacaaaggcaaagacagtttgaggaaggtcaactaattgagcaacgcgctgaggatgctcgcacgatgcagctagtatactgccctgcccatcccgtgggacaatttttctactgccagtgcatacaatcaaggctaccgatcatccccgggaatccccgttcttcagctttgtcaagcagccttcgcaaatctgccggtgttggtcggcggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

202

Amino Acids

23.54

Weight (kDa)

8.63

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	2 cut(s)	384, 438
AciI	CCGC	3 cut(s)	51, 335, 601
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	2 cut(s)	95, 389
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	41, 148, 353
AleI	CACNNNNGTG	1 cut(s)	198
AloI	GAACNNNNNNTCC	2 cut(s)	535, 567
AluBI	AGCT	7 cut(s)	17, 73, 256, 304, 308, 463, 560
AluI	AGCT	7 cut(s)	17, 73, 256, 304, 308, 463, 560
Alw21I	GWGCWC	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	539
ApeKI	GCWGC	2 cut(s)	460, 570
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	12, 440
AsuC2I	CCSGG	2 cut(s)	540, 541
AsuHPI	GGTGA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	539
BaeI	ACNNNNGTAYC	2 cut(s)	371, 404
BanI	GGYRCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	472, 582
BccI	CCATC	3 cut(s)	184, 224, 489
BcnI	CCSGG	2 cut(s)	540, 541
BfaI	CTAG	2 cut(s)	305, 464
BfoI	RGCGCY	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	461, 571
BlsI	GCNGC	2 cut(s)	462, 572
Bme1390I	CCNGG	2 cut(s)	540, 541
BmeT110I	CYCGRG	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	540, 541
BmsI	GCATC	3 cut(s)	322, 436, 447
BmtI	GCTAGC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	540, 541
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	486, 538, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	486, 538, 539
BseGI	GGATG	8 cut(s)	73, 229, 256, 337, 343, 451, 481, 534
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	237, 432
BseNI	ACTGG	1 cut(s)	508
BseXI	GCAGC	2 cut(s)	472, 582
Bsh1236I	CGCG	2 cut(s)	384, 438
BshNI	GGYRCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	540, 588
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	3 cut(s)	51, 335, 601
BspCNI	CTCAG	2 cut(s)	238, 433
BspFNI	CGCG	2 cut(s)	384, 438
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	9
BspTI	CTTAAG	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	486, 538, 539
BssMI	GATC	1 cut(s)	531
BssNAI	GTATAC	1 cut(s)	469
BssNI	GRCGYC	1 cut(s)	10
Bst1107I	GTATAC	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	10
BstAFI	CTTAAG	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	306, 451
BstDEI	CTNAG	3 cut(s)	246, 309, 441
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	8 cut(s)	73, 229, 256, 337, 343, 451, 481, 534
BstFNI	CGCG	2 cut(s)	384, 438
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 440
BstKTI	GATC	1 cut(s)	534
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 446, 576
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	538, 539
BstUI	CGCG	2 cut(s)	384, 438
BstV1I	GCAGC	2 cut(s)	472, 582
BstZ17I	GTATAC	1 cut(s)	469
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	8 cut(s)	73, 229, 256, 337, 343, 451, 481, 534
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	306, 451
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	12, 440
Cfr10I	RCCGGY	1 cut(s)	587
Cfr9I	CCCGGG	1 cut(s)	539
Csp6I	GTAC	2 cut(s)	94, 388
CviAII	CATG	3 cut(s)	76, 212, 276
CviJI	RGCY	9 cut(s)	17, 73, 256, 304, 308, 463, 526, 560, 573
CviKI_1	RGCY	9 cut(s)	17, 73, 256, 304, 308, 463, 526, 560, 573
CviQI	GTAC	2 cut(s)	94, 388
DdeI	CTNAG	3 cut(s)	246, 309, 441
DinI	GGCGCC	1 cut(s)	11
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
EgeI	GGCGCC	1 cut(s)	11
EheI	GGCGCC	1 cut(s)	11
FaeI	CATG	3 cut(s)	79, 215, 279
FaiI	YATR	7 cut(s)	62, 77, 213, 277, 369, 469, 515
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	3 cut(s)	75, 211, 275
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	2 cut(s)	461, 571
FokI	GGATG	8 cut(s)	80, 236, 263, 344, 350, 458, 468, 521
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	461, 571
FspBI	CTAG	2 cut(s)	305, 464
GlaI	GCGC	2 cut(s)	11, 439
GluI	GCNGC	2 cut(s)	461, 571
HaeII	RGCGCY	1 cut(s)	13
HapII	CCGG	2 cut(s)	540, 588
HhaI	GCGC	2 cut(s)	12, 440
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	79, 215, 279
Hin6I	GCGC	2 cut(s)	10, 438
HinP1I	GCGC	2 cut(s)	10, 438
HincII	GTYRAC	2 cut(s)	217, 422
HindII	GTYRAC	2 cut(s)	217, 422
HinfI	GANTC	2 cut(s)	101, 544
HpaII	CCGG	2 cut(s)	540, 588
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	3 cut(s)	217, 422, 469
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	76, 267
Hpy8I	GTNNAC	3 cut(s)	217, 422, 469
HpyAV	CCTTC	4 cut(s)	19, 101, 410, 584
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	358, 460, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 446, 576
HpyF3I	CTNAG	3 cut(s)	246, 309, 441
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	79, 215, 279
HspAI	GCGC	2 cut(s)	10, 438
KasI	GGCGCC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	531
LpnPI	CCDG	5 cut(s)	314, 489, 521, 553, 601
Lsp1109I	GCAGC	2 cut(s)	472, 582
LweI	GCATC	3 cut(s)	322, 436, 447
MaeI	CTAG	2 cut(s)	305, 464
MaeII	ACGT	1 cut(s)	92
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	2 cut(s)	57, 546
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	426, 494
Mly113I	GGCGCC	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	6 cut(s)	58, 241, 291, 406, 436, 597
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	21, 84
MslI	CAYNNNNRTG	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	2 cut(s)	540, 588
MspR9I	CCNGG	2 cut(s)	540, 541
MvnI	CGCG	2 cut(s)	384, 438
MwoI	GCNNNNNNNGC	3 cut(s)	136, 446, 576
NarI	GGCGCC	1 cut(s)	10
NciI	CCSGG	2 cut(s)	540, 541
NdeII	GATC	1 cut(s)	531
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	79, 215, 279
NlaIV	GGNNCC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	462, 572
PleI	GAGTC	1 cut(s)	95
PluTI	GGCGCC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	11
PsrI	GAACNNNNNNTAC	2 cut(s)	226, 258
RsaI	GTAC	2 cut(s)	95, 389
RsaNI	GTAC	2 cut(s)	94, 388
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	21, 84
SatI	GCNGC	2 cut(s)	461, 571
Sau3AI	GATC	1 cut(s)	531
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	540, 541
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	3 cut(s)	322, 436, 447
SfoI	GGCGCC	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	20, 282
SmoI	CTYRAG	2 cut(s)	20, 282
Sse9I	AATT	2 cut(s)	426, 494
SsiI	CCGC	3 cut(s)	51, 335, 601
SspDI	GGCGCC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	305, 464
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	538, 539
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	30
TasI	AATT	2 cut(s)	426, 494
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	21, 84
Tru9I	TTAA	2 cut(s)	21, 84
TscAI	CASTG	1 cut(s)	515
TseI	GCWGC	2 cut(s)	460, 570
TspDTI	ATGAA	3 cut(s)	17, 92, 384
TspGWI	ACGGA	2 cut(s)	170, 249
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	1 cut(s)	515
Van91I	CCANNNNNTGG	1 cut(s)	487
Vha464I	CTTAAG	1 cut(s)	20
XceI	RCATGY	1 cut(s)	279
XmaI	CCCGGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	305, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.