Rmu_sc0004088.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004088.1
OG0000386
Physical Location & Seq
Forward (+)
26421 .. 26711
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004088.1_g000006.1.cds

Sequence Viewer

Length: 291 bp
atgcaaaaatgttatgaacaaacagaacgcgagtaccaacaaaggcaaagacagtttgaggaaggtcaactaattgagcaacttgctgaggatgctcacatgatgcaagtggatccatcaattttcatcccaagaaagaggagttattgggagatgaagcaacaacaaataattgataaggaggcagaaacttcaagcatcccggaacaatctcaagatcctacaccccctgaaggagacaacacaagcttgaccacttatgatccacttagcaagacatcttggatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.45

Weight (kDa)

4.53

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AclWI GGATC 4 cut(s) 107, 120, 212, 257
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 195
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 4 cut(s) 107, 120, 212, 257
AsuC2I CCSGG 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 17, 50
BamHI GGATCC 1 cut(s) 112
BbvCI CCTCAGC 1 cut(s) 87
BccI CCATC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 3 cut(s) 82, 93, 207
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 233
BseGI GGATG 4 cut(s) 97, 126, 198, 291
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 112, 217, 262
BspCNI CTCAG 1 cut(s) 79
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 4 cut(s) 107, 120, 212, 257
BssMI GATC 3 cut(s) 112, 217, 262
Bst4CI ACNGT 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 87, 269
BstF5I GGATG 4 cut(s) 97, 126, 198, 291
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 3 cut(s) 115, 220, 265
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 112, 217, 262
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 112, 217
BstYI RGATCY 2 cut(s) 112, 217
BtsCI GGATG 4 cut(s) 97, 126, 198, 291
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 100
CviJI RGCY 1 cut(s) 249
CviKI_1 RGCY 1 cut(s) 249
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 87, 269
DpnI GATC 3 cut(s) 114, 219, 264
DpnII GATC 3 cut(s) 112, 217, 262
Eco57I CTGAAG 1 cut(s) 252
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 15, 101, 261
FatI CATG 1 cut(s) 99
FokI GGATG 3 cut(s) 104, 113, 185
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 247
HpaII CCGG 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 56, 227
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 4, 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 87, 269
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 3 cut(s) 112, 217, 262
LpnPI CCDG 2 cut(s) 216, 243
LweI GCATC 3 cut(s) 82, 93, 207
MalI GATC 3 cut(s) 114, 219, 264
MboI GATC 3 cut(s) 112, 217, 262
MflI RGATCY 2 cut(s) 112, 217
MluCI AATT 3 cut(s) 72, 120, 171
MnlI CCTC 4 cut(s) 52, 82, 132, 175
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 203
NdeII GATC 3 cut(s) 112, 217, 262
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 114
PsuI RGATCY 2 cut(s) 112, 217
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
Sau3AI GATC 3 cut(s) 112, 217, 262
ScrFI CCNGG 1 cut(s) 203
SetI ASST 2 cut(s) 67, 251
SfaNI GCATC 3 cut(s) 82, 93, 207
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 3 cut(s) 72, 120, 171
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 54
TasI AATT 3 cut(s) 72, 120, 171
TspDTI ATGAA 3 cut(s) 30, 115, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.