Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

331704 .. 332721

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggctccaagaggggattcatggagacacaatgaagaagttattctttgccgagcttggatcaccgttgggggtgatggtgctgtcggaaaagatcaaacgtcggagttattatggagtcgtgtttcggaggagtacaatgctcacaaaccggcaggttgcatggagagaacaacttctagttgccaagctcgttggaagaaaataagtctggcatgtatgaagtggcgccattctcttaacaaggtcgaacattttcaacgaagaagcggcgaaaatatggaggacgagctcatgaatgtcaaatcaacgtactacgacacaaatggttgtgattttttgtttgagcattgttggagagagttgaaaaatacggaaaagtttgggaaaattccatcaatggaaaacaccccctttagtgttcctaatcatgttgacttggatgacgatggaacacccaatactgatgatgagccgactccatcaaggaaggcacgtcctcaaggacagaaagctcagaagctagctaagaaaaaaggcaataagcaggatgcggatgggctacgagttcaaatgcagaaatgttatgaacaaacagagcgggagtaccaacaaaggcaaagacagtttgaggaagatcaactaattgagcaacgcgataaggatgctcgcacgatgcaggtggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggcagaaacttcaagcatcccggaacaatctcaagatcctacaccctctggaggagacaacacatgtacaggcttggccacttatgattcacttcaagagacaaattggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

289

Amino Acids

33.55

Weight (kDa)

5.81

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	2 cut(s)	146, 670
AccB1I	GGYRCC	1 cut(s)	228
AccBSI	CCGCTC	1 cut(s)	601
AccII	CGCG	1 cut(s)	657
AciI	CCGC	3 cut(s)	270, 554, 601
AclWI	GGATC	4 cut(s)	68, 680, 693, 785
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	4 cut(s)	137, 314, 608, 823
AfiI	CCNNNNNNNGG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	5 cut(s)	260, 367, 572, 768, 851
AjiI	CACGTC	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	6 cut(s)	56, 191, 292, 515, 523, 527
AluI	AGCT	6 cut(s)	56, 191, 292, 515, 523, 527
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	3 cut(s)	19, 804, 848
AlwI	GGATC	4 cut(s)	68, 680, 693, 785
AoxI	GGCC	1 cut(s)	831
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	3 cut(s)	42, 175, 255
AspLEI	GCGC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	3 cut(s)	55, 86, 691
AsuNHI	GCTAGC	1 cut(s)	523
BalI	TGGCCA	1 cut(s)	833
BamHI	GGATCC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	6 cut(s)	71, 403, 443, 490, 551, 697
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	3 cut(s)	19, 804, 848
BfaI	CTAG	2 cut(s)	180, 524
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	2 cut(s)	146, 670
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	776
BmgBI	CACGTC	1 cut(s)	497
BmiI	GGNNCC	3 cut(s)	6, 230, 687
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	4 cut(s)	541, 655, 666, 780
BmtI	GCTAGC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	486, 771
BpuMI	CCSGG	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	1 cut(s)	151
BseGI	GGATG	6 cut(s)	448, 556, 562, 670, 771, 870
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMII	CTCAG	1 cut(s)	530
BseRI	GAGGAG	3 cut(s)	146, 727, 822
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	1 cut(s)	833
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	152, 776
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	3 cut(s)	19, 804, 848
BsnI	GGCC	1 cut(s)	833
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	821
Bsp143I	GATC	5 cut(s)	60, 94, 637, 685, 790
BspACI	CCGC	3 cut(s)	270, 554, 601
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	657
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	6, 230, 687
BspMI	ACCTGC	2 cut(s)	146, 670
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	4 cut(s)	68, 680, 693, 785
BspT107I	GGYRCC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	821
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	5 cut(s)	60, 94, 637, 685, 790
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	67, 627
BstACI	GRCGYC	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	525, 670
BstDEI	CTNAG	2 cut(s)	516, 528
BstF5I	GGATG	6 cut(s)	448, 556, 562, 670, 771, 870
BstFNI	CGCG	1 cut(s)	657
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	5 cut(s)	63, 97, 640, 688, 793
BstMAI	GTCTC	3 cut(s)	19, 804, 848
BstMBI	GATC	5 cut(s)	60, 94, 637, 685, 790
BstNSI	RCATGY	2 cut(s)	219, 822
BstSCI	CCNGG	1 cut(s)	774
BstUI	CGCG	1 cut(s)	657
BstX2I	RGATCY	2 cut(s)	685, 790
BstYI	RGATCY	2 cut(s)	685, 790
BsuRI	GGCC	1 cut(s)	833
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	6 cut(s)	448, 556, 562, 670, 771, 870
BveI	ACCTGC	2 cut(s)	146, 670
Cac8I	GCNNGC	2 cut(s)	525, 670
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	151
Csp6I	GTAC	4 cut(s)	136, 313, 607, 822
CviAII	CATG	6 cut(s)	21, 163, 216, 295, 431, 819
CviQI	GTAC	4 cut(s)	136, 313, 607, 822
DdeI	CTNAG	2 cut(s)	516, 528
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	5 cut(s)	62, 96, 639, 687, 792
DpnII	GATC	5 cut(s)	60, 94, 637, 685, 790
EaeI	YGGCCR	1 cut(s)	831
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	6 cut(s)	24, 166, 219, 298, 434, 822
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	6 cut(s)	20, 162, 215, 294, 430, 818
FauI	CCCGC	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	5 cut(s)	455, 563, 569, 677, 758
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	2 cut(s)	180, 524
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	825
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	2 cut(s)	152, 776
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	6 cut(s)	24, 166, 219, 298, 434, 822
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	4 cut(s)	17, 118, 478, 842
HpaII	CCGG	2 cut(s)	152, 776
HphI	GGTGA	3 cut(s)	55, 86, 691
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	4 cut(s)	89, 106, 130, 519
Hpy188III	TCNNGA	4 cut(s)	295, 788, 804, 851
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	67, 627
HpyCH4IV	ACGT	3 cut(s)	101, 311, 496
HpyCH4V	TGCA	3 cut(s)	162, 577, 679
HpyF3I	CTNAG	2 cut(s)	516, 528
HpySE526I	ACGT	3 cut(s)	101, 311, 496
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	6 cut(s)	24, 166, 219, 298, 434, 822
HspAI	GCGC	1 cut(s)	229
KasI	GGCGCC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	60, 94, 637, 685, 790
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	8 cut(s)	141, 165, 197, 533, 665, 789, 789, 810
LweI	GCATC	4 cut(s)	541, 655, 666, 780
MaeI	CTAG	2 cut(s)	180, 524
MaeII	ACGT	3 cut(s)	101, 311, 496
MalI	GATC	5 cut(s)	62, 96, 639, 687, 792
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	5 cut(s)	60, 94, 637, 685, 790
MboII	GAAGA	4 cut(s)	47, 211, 276, 647
MflI	RGATCY	2 cut(s)	685, 790
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	833
MluCI	AATT	5 cut(s)	390, 645, 693, 744, 859
MluNI	TGGCCA	1 cut(s)	833
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	127, 472
MmeI	TCCRAC	4 cut(s)	67, 84, 176, 335
Mox20I	TGGCCA	1 cut(s)	833
MroXI	GAANNNNTTC	3 cut(s)	42, 175, 255
MscI	TGGCCA	1 cut(s)	833
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	833
MspI	CCGG	2 cut(s)	152, 776
MspR9I	CCNGG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	657
NarI	GGCGCC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	776
NdeII	GATC	5 cut(s)	60, 94, 637, 685, 790
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	6 cut(s)	24, 166, 219, 298, 434, 822
NlaIV	GGNNCC	3 cut(s)	6, 230, 687
NmeAIII	GCCGAG	1 cut(s)	77
NspI	RCATGY	2 cut(s)	219, 822
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	670
PciI	ACATGT	1 cut(s)	818
PdmI	GAANNNNTTC	3 cut(s)	42, 175, 255
PfeI	GAWTC	2 cut(s)	17, 842
PfoI	TCCNGGA	1 cut(s)	774
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	2 cut(s)	126, 472
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	2 cut(s)	126, 472
PscI	ACATGT	1 cut(s)	818
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	6, 230, 687
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PsuI	RGATCY	2 cut(s)	685, 790
RsaI	GTAC	4 cut(s)	137, 314, 608, 823
RsaNI	GTAC	4 cut(s)	136, 313, 607, 822
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	5 cut(s)	60, 94, 637, 685, 790
SchI	GAGTC	2 cut(s)	127, 472
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	4 cut(s)	541, 655, 666, 780
SfoI	GGCGCC	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	501, 786
SmoI	CTYRAG	2 cut(s)	501, 786
Sse9I	AATT	5 cut(s)	390, 645, 693, 744, 859
SsiI	CCGC	3 cut(s)	270, 554, 601
SspDI	GGCGCC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	180, 524
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	774
TaaI	ACNGT	2 cut(s)	67, 627
TaiI	ACGT	3 cut(s)	104, 314, 499
TaqI	TCGA	1 cut(s)	249
TasI	AATT	5 cut(s)	390, 645, 693, 744, 859
TatI	WGTACW	2 cut(s)	135, 821
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	17, 842
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspDTI	ATGAA	5 cut(s)	9, 48, 236, 311, 603
TspGWI	ACGGA	1 cut(s)	389
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	2 cut(s)	219, 822
XmnI	GAANNNNTTC	3 cut(s)	42, 175, 255
XspI	CTAG	2 cut(s)	180, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.