Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006875.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

2619 .. 3110

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006875.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaatgtcggtagctcaagttttcctacctctatcaacttagaggacgacggcactcccgcgagtgactccccaagctcttcaaatgtgcatgcacgccccccaggtcaaaaagctcagaaggctgctaagaaaaaatccagtcaagacgaaacaggtgaactcatattgcaaatgcaaaggattgcagaccaaggagagcgcgatctcaaatacaggctgcgactcagggaggagacaagattagctgagcagcacgcagatgatgctcgcacaatgacattggatccatcaattttcacacccaaaaaaaggagttattgggagaggaagcaagcacagattattgagagggaggaacaaagctccagtgctggtgcatttcgtcaaccctccttttctgctgaagaaaatacaccacatagtgaagatgactctaacttgtacctctacgtgccagttcaagagactcaatggatggggagaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

163

Amino Acids

18.46

Weight (kDa)

5.47

Isoelectric Point (pI)

63.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	62, 204
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	2 cut(s)	281, 294
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	84, 464
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	5 cut(s)	15, 78, 116, 248, 366
AluI	AGCT	5 cut(s)	15, 78, 116, 248, 366
Alw26I	GTCTC	2 cut(s)	230, 461
AlwI	GGATC	2 cut(s)	281, 294
ApeKI	GCWGC	3 cut(s)	125, 220, 253
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	286
BbvI	GCAGC	3 cut(s)	112, 207, 265
BccI	CCATC	2 cut(s)	298, 472
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	230, 461
BisI	GCNGC	3 cut(s)	126, 221, 254
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	3 cut(s)	127, 222, 255
Bme1390I	CCNGG	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	352
Bpu1102I	GCTNAGC	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	103, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	141, 369, 458
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	103, 193
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	131, 240, 241
BseNI	ACTGG	3 cut(s)	141, 369, 458
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	112, 207, 265
Bsh1236I	CGCG	2 cut(s)	62, 204
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	230, 461
Bsp143I	GATC	2 cut(s)	205, 286
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	3 cut(s)	130, 240, 241
BspFNI	CGCG	2 cut(s)	62, 204
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	281, 294
BspQI	GCTCTTC	1 cut(s)	85
BsrI	ACTGG	3 cut(s)	141, 369, 458
BssECI	CCNNGG	2 cut(s)	103, 193
BssMI	GATC	2 cut(s)	205, 286
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	5 cut(s)	93, 97, 258, 271, 336
BstDEI	CTNAG	5 cut(s)	40, 117, 129, 227, 249
BstF5I	GGATG	1 cut(s)	483
BstFNI	CGCG	2 cut(s)	62, 204
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	208, 289
BstMAI	GTCTC	2 cut(s)	230, 461
BstMBI	GATC	2 cut(s)	205, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 266
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	2 cut(s)	62, 204
BstV1I	GCAGC	3 cut(s)	112, 207, 265
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	5 cut(s)	93, 97, 258, 271, 336
CfoI	GCGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	7 cut(s)	15, 78, 116, 125, 220, 248, 366
CviKI_1	RGCY	7 cut(s)	15, 78, 116, 125, 220, 248, 366
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	5 cut(s)	40, 117, 129, 227, 249
DpnI	GATC	2 cut(s)	207, 288
DpnII	GATC	2 cut(s)	205, 286
DraIII	CACNNNGTG	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	95
FaiI	YATR	3 cut(s)	93, 167, 423
FatI	CATG	1 cut(s)	91
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	126, 221, 254
Fsp4HI	GCNGC	3 cut(s)	126, 221, 254
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	3 cut(s)	126, 221, 254
GsuI	CTGGAG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	4 cut(s)	68, 225, 434, 469
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	161, 389
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	146, 464
Hpy8I	GTNNAC	2 cut(s)	161, 389
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	91, 95, 172, 178, 188, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 266
HpyF3I	CTNAG	5 cut(s)	40, 117, 129, 227, 249
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	205, 286
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	9 cut(s)	90, 117, 141, 154, 202, 214, 360, 382, 471
Lsp1109I	GCAGC	3 cut(s)	112, 207, 265
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	207, 288
MboI	GATC	2 cut(s)	205, 286
MboII	GAAGA	3 cut(s)	72, 419, 440
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	2 cut(s)	294, 487
MlyI	GAGTC	4 cut(s)	62, 219, 428, 463
MnlI	CCTC	8 cut(s)	37, 40, 226, 321, 345, 349, 403, 458
MslI	CAYNNNNRTG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	2 cut(s)	62, 204
MwoI	GCNNNNNNNGC	2 cut(s)	122, 266
NdeII	GATC	2 cut(s)	205, 286
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	127, 222, 255
PleI	GAGTC	4 cut(s)	62, 219, 428, 463
PpsI	GAGTC	4 cut(s)	62, 219, 428, 463
Ppu21I	YACGTR	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	85
SatI	GCNGC	3 cut(s)	126, 221, 254
Sau3AI	GATC	2 cut(s)	205, 286
SchI	GAGTC	4 cut(s)	62, 219, 428, 463
ScrFI	CCNGG	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	2 cut(s)	294, 487
SsiI	CCGC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	193
TaiI	ACGT	1 cut(s)	456
TasI	AATT	2 cut(s)	294, 487
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	125, 220, 253
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	376
XceI	RCATGY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.