Rroxscaffold_3G00221910

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
4878507 .. 4879276
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221910.1

Sequence Viewer

Length: 324 bp
ATGCCTAACCCAAGACAAGAGTGTTGGAAGGACGCCGAAGATATAGCCTTGTGCATAGCTGTAGTTACCGTTGGTGAAGACGGCTCTAAGGGTACTAGTCAAGAGAAAAAAGATTGTGGGAGCGTATACATGAAGTATAAGAGACTTGCAAGCCTGCCGGAGGCGTGGTTATATTGGGAGGAGGGTGTGACGGTCGTTGGAAAAAGATTAGACCGGCATGCCAAAGATGGCGTCAAGCTCTTAACAAAGCGGCACGTCTTCGAGGAAGTGGTGATAACGCCACCGACGAGGTATTACAAGCTAAGTCAATATATCGTACCTTAG

Protein Analysis

107

Amino Acids

12.24

Weight (kDa)

8.41

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 33, 231
AfaI GTAC 2 cut(s) 94, 318
AfiI CCNNNNNNNGG 1 cut(s) 160
AhlI ACTAGT 1 cut(s) 95
AjiI CACGTC 1 cut(s) 256
AluBI AGCT 3 cut(s) 59, 238, 301
AluI AGCT 3 cut(s) 59, 238, 301
Alw26I GTCTC 1 cut(s) 136
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AsuHPI GGTGA 2 cut(s) 86, 283
BbsI GAAGAC 2 cut(s) 84, 250
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 84, 250
BsaHI GRCGYC 2 cut(s) 33, 231
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 195
BsiSI CCGG 2 cut(s) 158, 214
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 136
BspACI CCGC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssNAI GTATAC 1 cut(s) 127
BssNI GRCGYC 2 cut(s) 33, 231
Bst1107I GTATAC 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 70, 193
BstACI GRCGYC 2 cut(s) 33, 231
BstC8I GCNNGC 3 cut(s) 151, 155, 219
BstDEI CTNAG 3 cut(s) 87, 302, 321
BstENI CCTNNNNNAGG 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 136
BstMCI CGRYCG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 60
BstV2I GAAGAC 2 cut(s) 84, 250
BstZ17I GTATAC 1 cut(s) 127
BtrI CACGTC 1 cut(s) 256
Cac8I GCNNGC 3 cut(s) 151, 155, 219
Cfr10I RCCGGY 1 cut(s) 213
CseI GACGC 2 cut(s) 41, 220
Csp6I GTAC 2 cut(s) 93, 317
CviAII CATG 2 cut(s) 130, 218
CviJI RGCY 6 cut(s) 47, 59, 84, 153, 238, 301
CviKI_1 RGCY 6 cut(s) 47, 59, 84, 153, 238, 301
CviQI GTAC 2 cut(s) 93, 317
DdeI CTNAG 3 cut(s) 87, 302, 321
EcoNI CCTNNNNNAGG 1 cut(s) 158
FaeI CATG 2 cut(s) 133, 221
FaiI YATR 8 cut(s) 44, 56, 127, 131, 138, 172, 219, 312
FatI CATG 2 cut(s) 129, 217
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 251
HapII CCGG 2 cut(s) 158, 214
HgaI GACGC 2 cut(s) 41, 220
Hin1I GRCGYC 2 cut(s) 33, 231
Hin1II CATG 2 cut(s) 133, 221
HpaII CCGG 2 cut(s) 158, 214
HphI GGTGA 2 cut(s) 86, 283
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 70, 193
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 54, 149
HpyF3I CTNAG 3 cut(s) 87, 302, 321
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 2 cut(s) 33, 231
Hsp92II CATG 2 cut(s) 133, 221
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 3 cut(s) 167, 171, 227
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 64, 187
MboII GAAGA 3 cut(s) 50, 89, 250
MmeI TCCRAC 2 cut(s) 5, 178
MnlI CCTC 5 cut(s) 154, 172, 175, 256, 282
MseI TTAA 1 cut(s) 242
MspI CCGG 2 cut(s) 158, 214
NlaIII CATG 2 cut(s) 133, 221
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PkrI GCNGC 1 cut(s) 252
RsaI GTAC 2 cut(s) 94, 318
RsaNI GTAC 2 cut(s) 93, 317
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 251
SetI ASST 6 cut(s) 61, 240, 258, 293, 303, 322
SfcI CTRYAG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 95
SphI GCATGC 1 cut(s) 221
SsiI CCGC 1 cut(s) 250
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 70, 193
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 261
TauI GCSGC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 146
XagI CCTNNNNNAGG 1 cut(s) 158
XceI RCATGY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.