Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

7477110 .. 7477499

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACCCCAACTTCTTCTTTTGCAAGGCCCCCGGGTAGAGATAAGCAAAAGGAAGCAAAGAGAAAAGGGAAGTCCCAAGATCCGACACGTGCCCAATTTGCTAGCGAAATGGCAATAATGAACGAAAACCAGTGTCGTCGGCAAGAAGAATCGGCCCAAATGCTTTTGGCCATGAAGGAAGAAGGGGATAGGGAGCAAGAAAGGTACAAAACTAATTTGATAATGGAGGACCTCGACAAATACACTCCAGAGAGGAAGAGATACTTACGTGGTAAGCAAAAGGAAATTTTACGGAGGAATGCCACAAGGAGTATATTTCAAGATGATGATTCATCTCAAAACTATCACCCAAGTCCATCACCAAGTCAAGATGGTGAATATCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

130

Amino Acids

15.22

Weight (kDa)

8.99

Isoelectric Point (pI)

78.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	320
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	26, 153, 168
ApoI	RAATTY	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	27, 154, 229
AsuC2I	CCSGG	2 cut(s)	32, 33
AsuHPI	GGTGA	3 cut(s)	338, 351, 386
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	94
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BalI	TGGCCA	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	89
BccI	CCATC	2 cut(s)	364, 365
BcnI	CCSGG	2 cut(s)	32, 33
BfaI	CTAG	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	32, 33
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	27, 154, 229
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	32, 33
BmtI	GCTAGC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	231
BpuMI	CCSGG	2 cut(s)	32, 33
BsaAI	YACGTR	2 cut(s)	89, 269
BsaJI	CCNNGG	2 cut(s)	30, 31
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	30, 31
BseNI	ACTGG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	94
BshFI	GGCC	3 cut(s)	28, 155, 170
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	28, 155, 170
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	79
BspANI	GGCC	3 cut(s)	28, 155, 170
BspLI	GGNNCC	1 cut(s)	29
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	30, 31
BssMI	GATC	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	251
BstBAI	YACGTR	2 cut(s)	89, 269
BstC8I	GCNNGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	30, 31
BstSLI	GKGCMC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	28, 155, 170
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	27, 154, 229
Cfr9I	CCCGGG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	3 cut(s)	28, 155, 170
CviKI_1	RGCY	3 cut(s)	28, 155, 170
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	229
Eco72I	CACGTG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	27, 229
FaeI	CATG	1 cut(s)	175
FaiI	YATR	2 cut(s)	173, 314
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	171
FspBI	CTAG	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	28, 155, 170
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	2 cut(s)	149, 329
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	3 cut(s)	338, 351, 386
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	248, 320, 368
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	169, 176
HpyCH4IV	ACGT	2 cut(s)	88, 268
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	88, 268
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	3 cut(s)	45, 143, 261
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	88, 268
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	4 cut(s)	6, 158, 191, 268
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	3 cut(s)	95, 214, 285
MluNI	TGGCCA	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	4 cut(s)	220, 242, 246, 288
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	388
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	32, 33
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	32, 33
NdeII	GATC	1 cut(s)	79
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	29
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	149, 329
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	2 cut(s)	89, 269
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	3 cut(s)	27, 154, 229
PspPPI	RGGWCCY	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	388
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	3 cut(s)	27, 154, 229
ScrFI	CCNGG	2 cut(s)	32, 33
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	91, 206, 234, 271
SinI	GGWCC	1 cut(s)	229
SmaI	CCCGGG	1 cut(s)	33
Sse9I	AATT	3 cut(s)	95, 214, 285
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	30, 31
TaiI	ACGT	2 cut(s)	91, 271
TaqI	TCGA	1 cut(s)	234
TasI	AATT	3 cut(s)	95, 214, 285
TfiI	GAWTC	2 cut(s)	149, 329
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	134, 188, 321
TspGWI	ACGGA	1 cut(s)	307
TspMI	CCCGGG	1 cut(s)	31
TspRI	CASTG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	285
XmaI	CCCGGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.